Wall clock time and date at job start Mon Mar 30 2020 04:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00348 * 2 1 4 4 C 1.50698 * 109.47160 * 89.99763 * 3 2 1 5 5 H 1.07997 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99728 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99963 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99797 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47361 * 59.99600 * 8 6 4 10 10 H 1.48494 * 109.47010 * 299.99471 * 8 6 4 11 11 H 1.48495 * 109.47020 * 179.97438 * 8 6 4 12 12 C 1.34780 * 119.99951 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00296 * 184.06734 * 12 2 1 14 14 C 1.50699 * 119.99759 * 4.06564 * 12 2 1 15 15 C 1.53008 * 109.47170 * 289.79661 * 14 12 2 16 16 C 1.52998 * 109.47394 * 49.79609 * 14 12 2 17 17 C 1.52996 * 109.47155 * 169.79934 * 14 12 2 18 18 H 1.08999 * 109.50373 * 59.99994 * 17 14 12 19 19 C 1.53125 * 109.50615 * 180.02562 * 17 14 12 20 20 C 1.53123 * 109.15957 * 177.55217 * 19 17 14 21 21 C 1.53032 * 109.31293 * 302.40739 * 20 19 17 22 22 N 1.46846 * 109.52450 * 59.15817 * 21 20 19 23 23 C 1.46846 * 111.19628 * 298.25705 * 22 21 20 24 24 H 1.09003 * 109.46677 * 84.84893 * 1 2 3 25 25 H 1.08997 * 109.47350 * 204.85042 * 1 2 3 26 26 H 1.09006 * 109.46825 * 324.85539 * 1 2 3 27 27 H 1.08998 * 109.46683 * 329.99562 * 3 2 1 28 28 H 1.09000 * 109.46904 * 210.00216 * 3 2 1 29 29 H 0.96996 * 120.00523 * 0.02562 * 7 6 4 30 30 H 1.09000 * 109.46606 * 40.38522 * 15 14 12 31 31 H 1.08998 * 109.46758 * 160.38819 * 15 14 12 32 32 H 1.08998 * 109.46851 * 280.38774 * 15 14 12 33 33 H 1.08998 * 109.46960 * 60.00064 * 16 14 12 34 34 H 1.08998 * 109.47103 * 179.97438 * 16 14 12 35 35 H 1.09002 * 109.47435 * 300.00365 * 16 14 12 36 36 H 1.08994 * 109.52066 * 297.49860 * 19 17 14 37 37 H 1.08997 * 109.52029 * 57.68741 * 19 17 14 38 38 H 1.08996 * 109.50316 * 182.44272 * 20 19 17 39 39 H 1.08995 * 109.50050 * 62.36584 * 20 19 17 40 40 H 1.09007 * 109.46231 * 299.14277 * 21 20 19 41 41 H 1.08997 * 109.45816 * 179.16888 * 21 20 19 42 42 H 1.00896 * 110.99924 * 174.16262 * 22 21 20 43 43 H 1.08998 * 109.47039 * 301.72657 * 23 22 21 44 44 H 1.09007 * 109.45656 * 181.75188 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1261 2.8779 1.6727 7 7 3.5535 3.6180 0.6730 8 14 3.4381 3.4169 3.4338 9 1 4.2413 2.3821 4.1333 10 1 2.1408 3.5938 4.1344 11 1 4.1805 4.7029 3.4338 12 6 2.1389 -1.1672 0.0005 13 8 3.3494 -1.1686 0.0750 14 6 1.3882 -2.4707 -0.0914 15 6 0.6282 -2.7147 1.2139 16 6 0.3964 -2.4071 -1.2547 17 6 2.3777 -3.6136 -0.3267 18 1 3.0845 -3.6594 0.5018 19 6 1.6156 -4.9384 -0.4209 20 6 2.6061 -6.0680 -0.7172 21 6 3.3577 -5.7551 -2.0129 22 7 4.0709 -4.4794 -1.8709 23 6 3.1360 -3.3720 -1.6339 24 1 -0.3633 0.0923 -1.0236 25 1 -0.3634 -0.9325 0.4319 26 1 -0.3633 0.8404 0.5916 27 1 1.6085 2.0283 -0.5139 28 1 3.1500 1.1383 -0.5139 29 1 3.3918 3.3380 -0.2415 30 1 0.1959 -1.7771 1.5633 31 1 -0.1673 -3.4396 1.0411 32 1 1.3147 -3.1013 1.9672 33 1 0.9378 -2.2333 -2.1846 34 1 -0.1462 -3.3501 -1.3214 35 1 -0.3086 -1.5928 -1.0871 36 1 1.1095 -5.1354 0.5241 37 1 0.8805 -4.8795 -1.2235 38 1 2.0643 -7.0072 -0.8284 39 1 3.3172 -6.1532 0.1045 40 1 2.6475 -5.6844 -2.8368 41 1 4.0740 -6.5506 -2.2183 42 1 4.6502 -4.2973 -2.6766 43 1 2.4267 -3.3124 -2.4594 44 1 3.6913 -2.4366 -1.5640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135055436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:27 Heat of formation + Delta-G solvation = -56.906543 kcal Electronic energy + Delta-G solvation = -22309.762375 eV Core-core repulsion = 19260.998226 eV Total energy + Delta-G solvation = -3048.764149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.86606 -39.34380 -36.91750 -36.38823 -34.77505 -32.63591 -30.84315 -29.17230 -28.30282 -27.67509 -25.60332 -24.86657 -24.07895 -22.48800 -20.54629 -19.62263 -19.01988 -17.62304 -17.28416 -17.05955 -16.31873 -15.82665 -15.69529 -15.45361 -15.21220 -15.07707 -14.66725 -14.36678 -14.22424 -13.94598 -13.61358 -13.60151 -13.38304 -13.17270 -12.97691 -12.89276 -12.54461 -12.52110 -12.41940 -11.97453 -11.78269 -11.69183 -11.46720 -11.36041 -11.18534 -11.08801 -10.63592 -10.30181 -9.44929 -9.35848 -8.70595 -6.46648 1.46906 1.56541 1.75789 1.80764 2.28357 2.52543 3.08099 3.20045 3.51495 3.73394 3.82068 4.01801 4.09817 4.16540 4.24817 4.28109 4.39332 4.47475 4.53512 4.65839 4.66862 4.69342 4.75665 4.76316 4.78529 4.87282 4.91138 4.96614 5.01490 5.06848 5.10315 5.16045 5.24135 5.32649 5.44572 5.54089 5.57115 5.80852 6.10692 6.13245 6.42936 6.45346 6.71279 7.28932 7.44770 8.63518 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027674 B = 0.005053 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.554538 B = 5540.123520 C = 5790.868651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.604 5.604 3 C 0.247 3.753 4 C -0.614 4.614 5 H 0.043 0.957 6 C -0.032 4.032 7 N -0.931 5.931 8 Si 1.118 2.882 9 H -0.282 1.282 10 H -0.260 1.260 11 H -0.278 1.278 12 C 0.501 3.499 13 O -0.592 6.592 14 C -0.067 4.067 15 C -0.144 4.144 16 C -0.163 4.163 17 C -0.051 4.051 18 H 0.044 0.956 19 C -0.110 4.110 20 C -0.118 4.118 21 C 0.055 3.945 22 N -0.705 5.705 23 C 0.063 3.937 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.017 0.983 28 H -0.012 1.012 29 H 0.254 0.746 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.037 0.963 41 H 0.083 0.917 42 H 0.345 0.655 43 H 0.037 0.963 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.268 -19.493 -4.414 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.652 4.652 5 H 0.061 0.939 6 C -0.230 4.230 7 N -0.568 5.568 8 Si 0.939 3.061 9 H -0.208 1.208 10 H -0.184 1.184 11 H -0.203 1.203 12 C 0.291 3.709 13 O -0.472 6.472 14 C -0.071 4.071 15 C -0.201 4.201 16 C -0.220 4.220 17 C -0.071 4.071 18 H 0.063 0.937 19 C -0.148 4.148 20 C -0.155 4.155 21 C -0.074 4.074 22 N -0.336 5.336 23 C -0.067 4.067 24 H 0.092 0.908 25 H 0.132 0.868 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.006 0.994 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.163 0.837 43 H 0.055 0.945 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.857 -18.386 -2.818 21.051 hybrid contribution -0.237 -0.342 -2.012 2.055 sum -10.095 -18.728 -4.830 21.817 Atomic orbital electron populations 1.22524 0.78396 1.04583 1.02462 1.47945 1.08066 1.05830 1.71674 1.18828 0.90649 0.81696 0.96338 1.22515 1.40474 1.09394 0.92861 0.93854 1.27372 0.92597 0.93636 1.09395 1.70926 1.45586 1.40397 0.99932 0.82931 0.77732 0.76032 0.69414 1.20817 1.18411 1.20300 1.21492 0.87654 0.86439 0.75331 1.90619 1.17000 1.87884 1.51726 1.20780 0.96534 0.90021 0.99737 1.22082 1.00680 1.03217 0.94160 1.22536 0.98517 1.05605 0.95298 1.20860 0.95164 0.94098 0.96943 0.93698 1.21736 0.97718 0.92070 1.03243 1.21617 0.97966 0.98767 0.97187 1.22042 0.97030 0.91038 0.97264 1.60181 1.24381 1.02946 1.46142 1.22004 0.94324 0.93688 0.96651 0.90775 0.86839 0.92295 0.96494 0.99408 0.93670 0.91831 0.87266 0.93096 0.93505 0.88156 0.89112 0.90041 0.90032 0.88874 0.92826 0.94470 0.89819 0.83717 0.94478 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.89 8.25 127.77 1.05 2.94 16 2 N -0.60 -26.44 2.85 -851.12 -2.42 -28.87 16 3 C 0.25 13.71 4.46 85.63 0.38 14.09 16 4 C -0.61 -36.86 9.39 25.60 0.24 -36.62 16 5 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 6 C -0.03 -1.93 5.46 84.65 0.46 -1.46 16 7 N -0.93 -59.38 13.65 21.45 0.29 -59.09 16 8 Si 1.12 52.58 29.90 68.60 2.05 54.63 16 9 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 C 0.50 21.63 5.96 87.66 0.52 22.15 16 13 O -0.59 -32.17 13.74 -3.04 -0.04 -32.21 16 14 C -0.07 -1.93 0.30 -52.93 -0.02 -1.95 16 15 C -0.14 -3.42 7.18 71.98 0.52 -2.90 16 16 C -0.16 -3.47 7.25 71.98 0.52 -2.94 16 17 C -0.05 -1.48 1.24 -10.74 -0.01 -1.49 16 18 H 0.04 1.64 7.98 -2.39 -0.02 1.63 16 19 C -0.11 -2.10 4.64 30.68 0.14 -1.96 16 20 C -0.12 -2.14 6.09 30.65 0.19 -1.95 16 21 C 0.05 1.07 6.55 86.32 0.57 1.64 16 22 N -0.70 -18.98 6.85 -514.00 -3.52 -22.50 16 23 C 0.06 1.95 5.18 86.33 0.45 2.39 16 24 H 0.07 1.88 7.15 -2.39 -0.02 1.86 16 25 H 0.11 2.68 3.30 -2.39 -0.01 2.67 16 26 H 0.06 1.92 8.11 -2.38 -0.02 1.90 16 27 H 0.02 0.94 7.94 -2.39 -0.02 0.92 16 28 H -0.01 -0.77 7.35 -2.39 -0.02 -0.79 16 29 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 30 H 0.06 1.61 5.50 -2.39 -0.01 1.59 16 31 H 0.11 1.63 7.47 -2.39 -0.02 1.61 16 32 H 0.05 1.33 7.98 -2.39 -0.02 1.31 16 33 H 0.05 1.12 6.41 -2.39 -0.02 1.10 16 34 H 0.10 1.43 6.37 -2.39 -0.02 1.42 16 35 H 0.09 1.76 3.74 -2.39 -0.01 1.75 16 36 H 0.08 1.32 7.05 -2.39 -0.02 1.31 16 37 H 0.08 1.26 6.32 -2.39 -0.02 1.25 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.34 8.38 8.90 -89.70 -0.80 7.58 16 43 H 0.04 1.03 6.38 -2.39 -0.02 1.01 16 44 H 0.04 1.86 5.93 -2.38 -0.01 1.85 16 Total: -1.00 -79.81 321.72 1.67 -78.13 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.30 Total: 17.97 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 5.01 Total: -8.07 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -5.65 Total: -110.45 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.04 Total: -32.21 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 2.05 Total: 54.63 kcal Total: -79.81 1.67 -78.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135055436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.227 kcal (2) G-P(sol) polarization free energy of solvation -79.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds