Wall clock time and date at job start Mon Mar 30 2020 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46612 * 2 1 4 4 C 1.50697 * 109.47465 * 119.99583 * 2 1 3 5 5 O 1.21283 * 119.99456 * 119.99771 * 4 2 1 6 6 N 1.34770 * 120.00482 * 300.00643 * 4 2 1 7 7 C 1.46493 * 120.00393 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47400 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.52996 * 109.47274 * 240.00334 * 2 1 3 18 18 H 1.09000 * 109.50168 * 300.00056 * 17 2 1 19 19 C 1.53128 * 109.50381 * 60.07060 * 17 2 1 20 20 C 1.53121 * 109.15628 * 177.59688 * 19 17 2 21 21 C 1.53033 * 109.28328 * 302.34684 * 20 19 17 22 22 N 1.46850 * 109.52304 * 59.18124 * 21 20 19 23 23 C 1.46851 * 111.23270 * 298.28082 * 22 21 20 24 24 H 1.09001 * 109.46975 * 299.99911 * 1 2 3 25 25 H 1.08994 * 109.47439 * 59.99909 * 1 2 3 26 26 H 1.09000 * 109.46462 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46828 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47167 * 299.99943 * 3 2 1 29 29 H 1.09001 * 109.47378 * 60.00336 * 3 2 1 30 30 H 0.97000 * 119.99567 * 359.97438 * 6 4 2 31 31 H 1.09004 * 109.46794 * 59.99777 * 7 6 4 32 32 H 1.09000 * 109.47559 * 300.00254 * 7 6 4 33 33 H 1.09004 * 109.47066 * 60.00265 * 8 7 6 34 34 H 1.08994 * 109.47405 * 300.00096 * 8 7 6 35 35 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 36 36 H 1.08990 * 109.52366 * 297.50451 * 19 17 2 37 37 H 1.08998 * 109.51599 * 57.63416 * 19 17 2 38 38 H 1.09000 * 109.50481 * 62.29336 * 20 19 17 39 39 H 1.09000 * 109.49842 * 182.40904 * 20 19 17 40 40 H 1.08994 * 109.46413 * 179.19876 * 21 20 19 41 41 H 1.09011 * 109.46195 * 299.18240 * 21 20 19 42 42 H 1.00897 * 111.00127 * 174.16183 * 22 21 20 43 43 H 1.08997 * 109.43006 * 301.68303 * 23 22 21 44 44 H 1.08996 * 109.49642 * 181.71762 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7297 -1.6964 1.1191 6 7 1.7069 -0.2499 2.4545 7 6 2.1948 -0.9407 3.6507 8 6 1.6854 -0.2192 4.8999 9 6 2.1879 -0.9295 6.1304 10 1 2.8089 -1.8076 6.0313 11 6 1.8600 -0.4548 7.3827 12 7 1.1042 0.6147 7.5033 13 14 2.4893 -1.3308 8.9078 14 1 3.3132 -2.4982 8.5036 15 1 3.3175 -0.3948 9.7099 16 1 1.3378 -1.7953 9.7224 17 6 2.0400 -0.7212 -1.2492 18 1 1.6770 -1.7489 -1.2498 19 6 1.5315 0.0012 -2.5000 20 6 2.0953 -0.6909 -3.7441 21 6 3.6240 -0.6896 -3.6741 22 7 4.0603 -1.3926 -2.4609 23 6 3.5704 -0.7198 -1.2511 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.1494 0.5389 2.5435 31 1 3.2848 -0.9411 3.6507 32 1 1.8312 -1.9683 3.6506 33 1 0.5954 -0.2185 4.9000 34 1 2.0493 0.8082 4.8999 35 1 0.8732 0.9485 8.3844 36 1 0.4425 -0.0358 -2.5245 37 1 1.8604 1.0402 -2.4795 38 1 1.7337 -1.7184 -3.7842 39 1 1.7714 -0.1554 -4.6365 40 1 4.0282 -1.1942 -4.5516 41 1 3.9855 0.3385 -3.6477 42 1 5.0645 -1.4883 -2.4399 43 1 3.9327 0.3081 -1.2358 44 1 3.9351 -1.2463 -0.3691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135076376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:33 Heat of formation + Delta-G solvation = -65.067517 kcal Electronic energy + Delta-G solvation = -21343.188186 eV Core-core repulsion = 18294.070150 eV Total energy + Delta-G solvation = -3049.118035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.50113 -38.17942 -35.24312 -34.86021 -32.82472 -31.76706 -30.09324 -28.99040 -27.49994 -25.15471 -24.32576 -23.17154 -22.12401 -20.89143 -19.86438 -18.61638 -16.69523 -16.52293 -16.23059 -15.31824 -15.15467 -14.62145 -14.50787 -14.42970 -14.02880 -13.77367 -13.64441 -13.31512 -13.00928 -12.68192 -12.31676 -12.28048 -12.13418 -11.85233 -11.68222 -11.26978 -11.18017 -11.04334 -10.91045 -10.63200 -10.57444 -10.48045 -10.30867 -10.25479 -9.69068 -9.36043 -8.97740 -8.52518 -8.43955 -8.31681 -6.09991 -4.12588 3.04800 3.27937 3.35516 3.40571 3.69037 4.12286 4.41259 4.60851 4.73188 4.76776 4.89568 4.95639 5.05325 5.25918 5.27214 5.32951 5.36086 5.49985 5.53642 5.58976 5.65505 5.72669 5.78218 5.82706 5.87438 5.93839 6.01433 6.11044 6.12676 6.34191 6.36263 6.42234 6.47304 6.75262 6.96274 7.04876 7.34199 7.52045 7.61649 7.88647 8.05934 8.28137 8.70969 8.93837 9.52339 11.01645 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040650 B = 0.003521 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.642485 B = 7949.692488 C = 8330.648403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 C -0.145 4.145 4 C 0.514 3.486 5 O -0.544 6.544 6 N -0.720 5.720 7 C 0.121 3.879 8 C 0.012 3.988 9 C -0.521 4.521 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.896 3.104 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.055 4.055 18 H 0.083 0.917 19 C -0.120 4.120 20 C -0.117 4.117 21 C 0.056 3.944 22 N -0.689 5.689 23 C 0.050 3.950 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.396 0.604 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.341 0.659 43 H 0.024 0.976 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 2.553 -21.198 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 C -0.203 4.203 4 C 0.299 3.701 5 O -0.422 6.422 6 N -0.369 5.369 7 C -0.001 4.001 8 C -0.025 4.025 9 C -0.559 4.559 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.074 4.074 18 H 0.101 0.899 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.073 4.073 22 N -0.320 5.320 23 C -0.078 4.078 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.230 0.770 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.158 0.842 43 H 0.042 0.958 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.172 1.501 -21.130 21.184 hybrid contribution 0.572 0.846 1.045 1.461 sum 0.744 2.347 -20.085 20.235 Atomic orbital electron populations 1.21893 0.92602 1.02759 1.02631 1.20810 0.97156 0.96479 0.93835 1.21983 1.01737 0.93918 1.02612 1.20435 0.80446 0.84564 0.84662 1.90607 1.38385 1.26616 1.86607 1.46341 1.52694 1.31670 1.06239 1.21703 0.98443 0.96270 0.83668 1.19320 0.96909 0.96002 0.90260 1.21102 1.31908 1.12458 0.90458 0.92211 1.25000 0.95034 0.95013 0.99275 1.69967 1.36814 1.22919 1.23625 0.86464 0.78697 0.79714 0.82743 1.19566 1.20947 1.20927 1.20890 0.95209 0.99788 0.91546 0.89880 1.21784 1.00449 0.99253 0.94305 1.21568 0.94961 1.01464 0.97465 1.21921 0.96135 0.96055 0.93225 1.60210 1.16721 1.53178 1.01842 1.22369 0.95114 0.96555 0.93767 0.91860 0.91416 0.92015 0.92001 0.91458 0.91887 0.77038 0.92680 0.92621 0.95993 0.96017 0.92918 0.91532 0.91960 0.91203 0.91896 0.91280 0.95698 0.84185 0.95829 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.02 37.16 0.30 -1.20 16 2 C -0.08 -0.97 0.43 -155.66 -0.07 -1.04 16 3 C -0.15 -1.54 7.67 37.16 0.28 -1.26 16 4 C 0.51 8.55 6.19 -10.99 -0.07 8.48 16 5 O -0.54 -10.89 13.67 5.55 0.08 -10.81 16 6 N -0.72 -12.50 5.34 -60.30 -0.32 -12.82 16 7 C 0.12 2.59 5.61 -4.05 -0.02 2.57 16 8 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 9 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 10 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 13 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C -0.06 -0.68 1.35 -90.54 -0.12 -0.80 16 18 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 19 C -0.12 -1.15 4.57 -26.60 -0.12 -1.27 16 20 C -0.12 -1.06 6.09 -26.65 -0.16 -1.23 16 21 C 0.06 0.53 6.55 -3.83 -0.03 0.51 16 22 N -0.69 -8.00 6.84 -113.82 -0.78 -8.78 16 23 C 0.05 0.66 5.18 -3.83 -0.02 0.64 16 24 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 25 H 0.07 0.58 6.49 -51.93 -0.34 0.24 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.70 6.41 -51.93 -0.33 0.37 16 28 H 0.07 0.59 6.38 -51.93 -0.33 0.26 16 29 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 30 H 0.40 6.06 7.31 -40.82 -0.30 5.76 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.07 0.58 6.58 -51.93 -0.34 0.24 16 37 H 0.06 0.56 6.31 -51.93 -0.33 0.24 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.23 8.14 -51.92 -0.42 -0.19 16 42 H 0.34 3.48 8.90 -39.29 -0.35 3.13 16 43 H 0.02 0.29 6.38 -51.93 -0.33 -0.04 16 44 H 0.10 1.69 5.54 -51.93 -0.29 1.40 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -30.84 334.16 -8.34 -39.18 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.49 Total: 4.86 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.58 Total: -7.68 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.36 Total: -46.97 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.84 -8.34 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135076376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.886 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds