Wall clock time and date at job start Mon Mar 30 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 C 1.52997 * 109.46832 * 120.00090 * 2 1 3 5 5 N 1.46501 * 109.46817 * 174.10452 * 4 2 1 6 6 C 1.46503 * 120.00070 * 276.68457 * 5 4 2 7 7 C 1.50704 * 109.46922 * 270.00021 * 6 5 4 8 8 H 1.07998 * 120.00448 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99627 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00371 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99962 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47016 * 59.99916 * 11 9 7 13 13 H 1.48499 * 109.47284 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47271 * 300.00218 * 11 9 7 15 15 C 1.34777 * 119.99985 * 96.69037 * 5 4 2 16 16 O 1.21285 * 120.00025 * 185.40935 * 15 5 4 17 17 C 1.50700 * 120.00293 * 5.40231 * 15 5 4 18 18 C 1.52991 * 109.47423 * 174.76825 * 17 15 5 19 19 H 1.09003 * 109.47074 * 304.99920 * 18 17 15 20 20 N 1.46895 * 109.47288 * 65.00184 * 18 17 15 21 21 C 1.53000 * 109.47454 * 185.00371 * 18 17 15 22 22 C 1.52997 * 117.52122 * 111.28098 * 21 18 17 23 23 C 1.53001 * 60.00128 * 107.48471 * 22 21 18 24 24 H 1.08989 * 109.47056 * 299.99862 * 1 2 3 25 25 H 1.08997 * 109.46653 * 59.99808 * 1 2 3 26 26 H 1.08997 * 109.46939 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47580 * 240.00218 * 2 1 3 28 28 H 1.08997 * 109.47473 * 184.70542 * 3 2 1 29 29 H 1.08992 * 109.47294 * 304.71245 * 3 2 1 30 30 H 1.09004 * 109.46859 * 64.70994 * 3 2 1 31 31 H 1.08999 * 109.47700 * 54.10720 * 4 2 1 32 32 H 1.09002 * 109.47630 * 294.10182 * 4 2 1 33 33 H 1.08992 * 109.46707 * 30.00014 * 6 5 4 34 34 H 1.08994 * 109.46927 * 150.00327 * 6 5 4 35 35 H 0.97000 * 120.00327 * 180.02562 * 10 9 7 36 36 H 1.09007 * 109.46620 * 54.76476 * 17 15 5 37 37 H 1.08995 * 109.47161 * 294.77241 * 17 15 5 38 38 H 1.00900 * 111.00032 * 60.00439 * 20 18 17 39 39 H 1.00901 * 110.99945 * 183.95469 * 20 18 17 40 40 H 1.09000 * 115.54929 * 325.58770 * 21 18 17 41 41 H 1.09002 * 117.50271 * 214.97748 * 22 21 18 42 42 H 1.09002 * 117.49799 * 359.97438 * 22 21 18 43 43 H 1.08994 * 117.49643 * 252.51258 * 23 22 21 44 44 H 1.08994 * 117.49726 * 107.48759 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4981 -0.8453 1.1804 6 6 4.1049 -1.9450 0.4262 7 6 4.2993 -3.1308 1.3359 8 1 4.0011 -3.0711 2.3722 9 6 4.8588 -4.2915 0.8453 10 7 5.2233 -4.3638 -0.4162 11 14 5.1004 -5.7610 1.9729 12 1 3.7853 -6.1953 2.5088 13 1 5.7154 -6.8758 1.2085 14 1 5.9920 -5.3805 3.0978 15 6 4.2813 0.0521 1.8110 16 8 5.4856 0.0080 1.6741 17 6 3.6607 1.1105 2.6860 18 6 4.7649 1.9102 3.3802 19 1 5.4214 1.2289 3.9214 20 7 5.5435 2.6451 2.3745 21 6 4.1366 2.9009 4.3624 22 6 4.3508 2.6477 5.8560 23 6 5.0826 3.7986 5.1626 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8935 -0.5138 -0.8900 28 1 3.1267 1.4437 -0.0843 29 1 1.6094 1.9801 -0.8447 30 1 1.7472 1.9314 0.9292 31 1 1.5931 -1.7139 1.3036 32 1 1.7654 -0.1502 2.1361 33 1 3.4503 -2.2239 -0.3994 34 1 5.0703 -1.6267 0.0331 35 1 5.6166 -5.1805 -0.7615 36 1 3.0285 0.6364 3.4368 37 1 3.0572 1.7804 2.0735 38 1 4.9569 3.2839 1.8589 39 1 6.3188 3.1301 2.8009 40 1 3.1801 3.3242 4.0559 41 1 3.5353 2.9044 6.5321 42 1 4.9391 1.7748 6.1392 43 1 6.1525 3.6831 4.9896 44 1 4.7483 4.8125 5.3824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137333924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:21 Heat of formation + Delta-G solvation = -25.985379 kcal Electronic energy + Delta-G solvation = -21624.386474 eV Core-core repulsion = 18576.963167 eV Total energy + Delta-G solvation = -3047.423307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.37089 -37.91421 -36.10034 -33.84437 -33.21845 -32.15521 -29.57917 -27.26498 -26.97408 -25.43712 -24.09268 -22.45053 -22.18282 -20.23279 -20.02874 -18.05553 -16.46594 -16.36035 -16.16521 -15.27163 -15.21880 -14.71190 -14.46486 -14.16388 -14.00249 -13.72895 -13.08061 -12.77594 -12.39071 -12.17495 -12.06543 -11.94276 -11.70414 -11.60043 -11.37704 -11.23852 -11.00590 -10.85696 -10.75724 -10.64967 -10.46677 -10.42286 -10.31302 -10.18457 -10.03041 -9.51916 -8.61772 -8.35544 -8.28635 -7.42174 -5.96165 -4.00721 3.35722 3.40098 3.42852 3.62975 3.71621 4.08334 4.49087 4.61796 4.69212 4.79476 4.98874 5.13334 5.16619 5.21060 5.27864 5.37253 5.46211 5.49687 5.52782 5.65260 5.72354 5.77371 5.79272 5.89103 5.93350 5.96947 6.02867 6.05430 6.14323 6.27641 6.32451 6.35402 6.54911 6.64296 7.22766 7.42042 7.59811 7.70267 7.73186 8.02508 8.34663 8.65683 9.00907 9.37632 9.64949 11.11495 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.005967 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.383384 B = 4691.509420 C = 5849.860565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.146 4.146 4 C 0.118 3.882 5 N -0.604 5.604 6 C 0.249 3.751 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.511 3.489 16 O -0.519 6.519 17 C -0.141 4.141 18 C 0.140 3.860 19 H 0.085 0.915 20 N -0.817 5.817 21 C -0.191 4.191 22 C -0.174 4.174 23 C -0.181 4.181 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.330 0.670 39 H 0.335 0.665 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.324 15.295 6.890 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.203 4.203 4 C -0.007 4.007 5 N -0.336 5.336 6 C 0.129 3.871 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.297 3.703 16 O -0.394 6.394 17 C -0.181 4.181 18 C 0.028 3.972 19 H 0.103 0.897 20 N -0.344 5.344 21 C -0.211 4.211 22 C -0.212 4.212 23 C -0.218 4.218 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.408 14.392 6.322 17.378 hybrid contribution -0.365 -0.035 1.182 1.238 sum -7.773 14.357 7.504 17.969 Atomic orbital electron populations 1.21762 0.95275 1.01749 1.01203 1.21567 0.95167 0.96559 1.00362 1.21951 1.01789 0.95955 1.00642 1.21470 0.82292 1.00679 0.96248 1.48170 1.04907 1.28381 1.52171 1.19162 0.94409 0.82615 0.90886 1.21436 1.40857 0.97385 0.96643 0.92698 1.24924 0.95375 0.98668 0.95115 1.69927 1.42168 1.27847 1.13490 0.86603 0.78336 0.81958 0.80755 1.20342 1.21231 1.20272 1.20059 0.87358 0.81943 0.80980 1.90687 1.14211 1.72281 1.62189 1.21963 0.98610 0.97969 0.99559 1.20755 0.93553 0.93000 0.89924 0.89693 1.58797 1.12860 1.34424 1.28345 1.23428 1.00898 1.02716 0.94060 1.22953 1.03163 1.00346 0.94762 1.22884 0.98392 0.95525 1.05017 0.93009 0.92964 0.92512 0.90522 0.92123 0.93217 0.93064 0.90618 0.91758 0.95445 0.93914 0.92783 0.89710 0.89139 0.85761 0.85216 0.88087 0.89044 0.88536 0.88800 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 2 C -0.12 -1.67 3.11 -90.62 -0.28 -1.95 16 3 C -0.15 -1.90 7.59 37.16 0.28 -1.62 16 4 C 0.12 1.95 4.89 -4.04 -0.02 1.93 16 5 N -0.60 -12.88 2.26 -175.06 -0.40 -13.28 16 6 C 0.25 6.64 5.22 -5.19 -0.03 6.61 16 7 C -0.52 -15.12 9.39 -34.44 -0.32 -15.44 16 8 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 11 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.51 10.69 6.34 -10.99 -0.07 10.62 16 16 O -0.52 -13.24 14.84 5.55 0.08 -13.16 16 17 C -0.14 -2.10 3.68 -27.89 -0.10 -2.21 16 18 C 0.14 1.94 2.53 -67.72 -0.17 1.77 16 19 H 0.08 1.40 7.79 -51.93 -0.40 1.00 16 20 N -0.82 -11.34 8.23 -4.67 -0.04 -11.37 16 21 C -0.19 -2.00 5.33 -90.62 -0.48 -2.48 16 22 C -0.17 -1.73 10.18 -26.73 -0.27 -2.00 16 23 C -0.18 -1.68 9.86 -26.73 -0.26 -1.94 16 24 H 0.05 0.52 8.14 -51.94 -0.42 0.09 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.27 8.01 -51.93 -0.42 0.86 16 28 H 0.06 0.94 6.87 -51.93 -0.36 0.59 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.57 6.49 -51.93 -0.34 0.24 16 31 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 32 H 0.06 0.90 6.10 -51.93 -0.32 0.58 16 33 H 0.03 0.75 7.94 -51.93 -0.41 0.33 16 34 H 0.04 1.30 7.35 -51.93 -0.38 0.92 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.08 1.17 7.37 -51.92 -0.38 0.79 16 37 H 0.09 1.17 4.79 -51.93 -0.25 0.92 16 38 H 0.33 3.97 9.00 -39.29 -0.35 3.62 16 39 H 0.34 4.07 8.30 -39.29 -0.33 3.75 16 40 H 0.10 0.98 8.11 -51.93 -0.42 0.56 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 43 H 0.09 0.88 7.74 -51.93 -0.40 0.48 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -33.13 349.26 -8.54 -41.67 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.68 Total: 6.37 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.49 Total: -6.31 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.30 Total: -51.03 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.13 -8.54 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137333924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.687 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds