Wall clock time and date at job start Mon Mar 30 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 6 6 H 1.07995 * 120.00485 * 119.99509 * 5 3 2 7 7 C 1.37880 * 119.99796 * 300.00708 * 5 3 2 8 8 N 1.31510 * 119.99943 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00029 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47190 * 90.00302 * 9 7 5 11 11 H 1.48498 * 109.47233 * 210.00871 * 9 7 5 12 12 H 1.48503 * 109.46978 * 330.00665 * 9 7 5 13 13 N 1.46504 * 109.47349 * 295.00344 * 3 2 1 14 14 C 1.34776 * 120.00216 * 84.99451 * 13 3 2 15 15 O 1.21283 * 119.99606 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00388 * 180.02562 * 14 13 3 17 17 C 1.53003 * 109.47015 * 60.00077 * 16 14 13 18 18 N 1.46894 * 109.47175 * 300.00406 * 17 16 14 19 19 C 1.53000 * 109.47161 * 300.00573 * 16 14 13 20 20 C 1.53003 * 109.46751 * 299.99666 * 19 16 14 21 21 C 1.52997 * 109.47174 * 299.99578 * 20 19 16 22 22 C 1.53000 * 109.46937 * 60.00536 * 21 20 19 23 23 C 1.53002 * 109.47604 * 180.02562 * 16 14 13 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 0.97005 * 119.99902 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99585 * 265.00132 * 13 3 2 31 31 H 1.08999 * 109.46614 * 60.00034 * 17 16 14 32 32 H 1.09000 * 109.47257 * 179.97438 * 17 16 14 33 33 H 1.00903 * 111.00273 * 180.02562 * 18 17 16 34 34 H 1.00904 * 111.00151 * 303.94912 * 18 17 16 35 35 H 1.08997 * 109.47467 * 59.99691 * 19 16 14 36 36 H 1.09000 * 109.47464 * 179.97438 * 19 16 14 37 37 H 1.09008 * 109.46642 * 180.02562 * 20 19 16 38 38 H 1.09000 * 109.47257 * 60.00366 * 20 19 16 39 39 H 1.09000 * 109.47672 * 300.00534 * 21 20 19 40 40 H 1.09004 * 109.46805 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47467 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47464 * 59.99608 * 22 21 20 43 43 H 1.08990 * 109.47235 * 179.97438 * 23 16 14 44 44 H 1.09000 * 109.46712 * 300.00329 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8797 1.3357 9 14 3.0965 0.1099 2.5705 10 1 2.8748 -1.3262 2.2643 11 1 3.7942 0.2359 3.8753 12 1 1.7881 0.8090 2.6393 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3394 2.6325 -0.4340 16 6 0.0360 3.3377 -2.6547 17 6 0.0796 2.3205 -3.7968 18 7 1.4420 1.7863 -3.9251 19 6 1.0065 4.4821 -2.9538 20 6 0.9629 5.4993 -1.8117 21 6 -0.4560 6.0557 -1.6781 22 6 -1.4265 4.9113 -1.3790 23 6 -1.3827 3.8946 -2.5209 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 5.8771 0.4818 2.1126 30 1 2.2719 2.1232 -1.9978 31 1 -0.6117 1.5052 -3.5837 32 1 -0.2094 2.8074 -4.7282 33 1 1.4970 1.1120 -4.6737 34 1 2.1108 2.5299 -4.0589 35 1 2.0174 4.0858 -3.0490 36 1 0.7182 4.9689 -3.8855 37 1 1.6540 6.3149 -2.0251 38 1 1.2515 5.0123 -0.8802 39 1 -0.7446 6.5427 -2.6096 40 1 -0.4871 6.7800 -0.8642 41 1 -2.4373 5.3076 -1.2834 42 1 -1.1379 4.4242 -0.4475 43 1 -1.6711 4.3819 -3.4522 44 1 -2.0743 3.0795 -2.3076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138090003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:48 Heat of formation + Delta-G solvation = -75.690026 kcal Electronic energy + Delta-G solvation = -22891.799987 eV Core-core repulsion = 19842.221326 eV Total energy + Delta-G solvation = -3049.578662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72867 -38.63535 -36.79166 -35.73600 -34.24107 -32.94596 -31.67166 -31.15341 -29.28820 -25.82045 -24.81455 -23.75085 -23.42274 -21.76934 -21.29831 -20.41544 -18.60647 -17.50135 -17.16189 -17.14560 -16.30914 -15.87282 -15.76475 -15.28621 -15.11111 -14.84797 -14.75124 -14.40564 -14.17974 -13.84895 -13.67484 -13.44126 -13.06650 -13.01749 -12.90562 -12.75119 -12.70229 -12.36819 -12.29425 -11.94037 -11.82282 -11.54009 -11.29408 -11.16458 -11.02024 -10.90223 -10.81986 -10.15671 -9.51808 -9.38303 -8.35477 -6.38578 1.25727 1.33288 1.44126 2.07497 2.27284 2.74477 3.00555 3.52621 3.76207 3.80424 3.95639 4.18499 4.29519 4.31067 4.36267 4.37685 4.49043 4.52987 4.57332 4.65287 4.69049 4.77274 4.88121 4.89938 4.98493 5.02984 5.09528 5.12193 5.19100 5.29127 5.31578 5.34842 5.41488 5.45929 5.50569 5.57257 5.70108 5.94176 6.27121 6.28720 6.63349 6.65236 7.23318 7.26273 7.81929 8.79893 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022266 B = 0.006698 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.240458 B = 4179.206987 C = 4218.160978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 C 0.250 3.750 4 H 0.011 0.989 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.029 3.971 8 N -0.935 5.935 9 Si 0.936 3.064 10 H -0.262 1.262 11 H -0.293 1.293 12 H -0.265 1.265 13 N -0.682 5.682 14 C 0.518 3.482 15 O -0.590 6.590 16 C -0.074 4.074 17 C 0.081 3.919 18 N -0.862 5.862 19 C -0.103 4.103 20 C -0.126 4.126 21 C -0.110 4.110 22 C -0.135 4.135 23 C -0.084 4.084 24 H 0.053 0.947 25 H 0.032 0.968 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.268 0.732 30 H 0.408 0.592 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.357 0.643 34 H 0.347 0.653 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.024 0.976 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 6.449 -13.781 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.170 4.170 3 C 0.144 3.856 4 H 0.029 0.971 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.170 4.170 8 N -0.574 5.574 9 Si 0.764 3.236 10 H -0.188 1.188 11 H -0.221 1.221 12 H -0.190 1.190 13 N -0.333 5.333 14 C 0.306 3.694 15 O -0.473 6.473 16 C -0.077 4.077 17 C -0.050 4.050 18 N -0.397 5.397 19 C -0.141 4.141 20 C -0.163 4.163 21 C -0.148 4.148 22 C -0.173 4.173 23 C -0.123 4.123 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.248 0.752 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.172 0.828 34 H 0.162 0.838 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.859 6.081 -12.308 18.811 hybrid contribution 0.454 -0.197 0.069 0.500 sum -12.405 5.884 -12.239 18.393 Atomic orbital electron populations 1.21706 0.95349 1.00050 1.01440 1.22143 0.95721 0.98827 1.00358 1.18666 0.92818 0.89487 0.84625 0.97070 1.21307 0.90583 1.37866 1.06490 0.92819 1.25513 0.95679 0.96051 0.99783 1.69978 1.10097 1.46547 1.30795 0.86047 0.79230 0.79845 0.78500 1.18808 1.22069 1.18981 1.46116 1.16143 1.55010 1.16056 1.20799 0.81280 0.77764 0.89567 1.90555 1.52610 1.61658 1.42469 1.20993 0.98221 0.96053 0.92471 1.21696 0.91124 0.96206 0.95962 1.58573 1.05893 1.20849 1.54383 1.21603 0.98322 0.94460 0.99677 1.21561 0.98114 0.98901 0.97768 1.21493 0.93929 0.97189 1.02151 1.21733 0.99416 0.96363 0.99766 1.21271 0.93117 0.98328 0.99537 0.92771 0.94864 0.92546 0.94461 0.91695 0.92252 0.75231 0.91758 0.91358 0.82754 0.83814 0.91604 0.87998 0.90546 0.95749 0.89752 0.92688 0.91498 0.92703 0.88756 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.51 71.98 0.61 -4.67 16 2 C -0.13 -6.06 5.11 30.59 0.16 -5.90 16 3 C 0.25 12.38 1.83 44.24 0.08 12.46 16 4 H 0.01 0.64 6.63 -2.38 -0.02 0.62 16 5 C -0.52 -29.66 9.31 25.60 0.24 -29.42 16 6 H 0.05 3.23 7.98 -2.91 -0.02 3.20 16 7 C 0.03 1.69 5.45 84.66 0.46 2.15 16 8 N -0.93 -57.40 13.96 21.45 0.30 -57.10 16 9 Si 0.94 46.89 24.41 68.60 1.67 48.56 16 10 H -0.26 -12.42 6.83 99.48 0.68 -11.74 16 11 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.26 -13.36 6.53 99.48 0.65 -12.71 16 13 N -0.68 -27.79 4.53 -446.09 -2.02 -29.81 16 14 C 0.52 19.17 3.53 87.66 0.31 19.48 16 15 O -0.59 -25.85 10.80 -3.04 -0.03 -25.88 16 16 C -0.07 -1.87 0.52 -52.93 -0.03 -1.90 16 17 C 0.08 1.63 5.74 86.31 0.50 2.13 16 18 N -0.86 -17.71 7.11 -186.73 -1.33 -19.04 16 19 C -0.10 -2.26 4.31 30.60 0.13 -2.12 16 20 C -0.13 -3.26 5.70 30.59 0.17 -3.09 16 21 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 22 C -0.14 -3.58 5.63 30.58 0.17 -3.41 16 23 C -0.08 -1.97 4.37 30.58 0.13 -1.84 16 24 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.03 1.46 7.85 -2.39 -0.02 1.44 16 26 H 0.06 2.28 5.64 -2.39 -0.01 2.27 16 27 H 0.04 1.79 3.22 -2.39 -0.01 1.78 16 28 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 30 H 0.41 15.33 5.59 -92.71 -0.52 14.81 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.36 5.78 9.08 -89.69 -0.81 4.97 16 34 H 0.35 6.42 6.75 -89.69 -0.61 5.81 16 35 H 0.07 1.50 5.99 -2.39 -0.01 1.49 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.02 0.84 7.22 -2.39 -0.02 0.82 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.05 1.96 5.51 -2.39 -0.01 1.95 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -69.27 316.48 0.70 -68.57 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -1.01 Total: 33.15 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 3.12 Total: -18.45 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -3.05 Total: -105.95 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.03 Total: -25.88 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.67 Total: 48.56 kcal Total: -69.27 0.70 -68.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138090003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.122 kcal (2) G-P(sol) polarization free energy of solvation -69.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds