Wall clock time and date at job start Mon Mar 30 2020 04:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46772 * 2 1 4 4 C 1.53002 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.09008 * 110.88254 * 57.35531 * 4 3 2 6 6 C 1.54629 * 110.96943 * 293.55070 * 4 3 2 7 7 C 1.51283 * 104.31205 * 217.01673 * 6 4 3 8 8 O 1.21279 * 124.94192 * 196.27232 * 7 6 4 9 9 N 1.34742 * 109.93407 * 16.31007 * 7 6 4 10 10 C 1.46496 * 124.29726 * 180.39346 * 9 7 6 11 11 N 1.46503 * 109.47266 * 269.95801 * 10 9 7 12 12 C 1.36943 * 120.00068 * 270.00550 * 11 10 9 13 13 H 1.07996 * 120.00182 * 146.04641 * 12 11 10 14 14 C 1.38813 * 119.99345 * 326.04642 * 12 11 10 15 15 N 1.31615 * 120.00351 * 336.65214 * 14 12 11 16 16 Si 1.86803 * 119.99719 * 156.65175 * 14 12 11 17 17 H 1.48499 * 109.47240 * 59.99855 * 16 14 12 18 18 H 1.48496 * 109.47384 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47218 * 300.00022 * 16 14 12 20 20 C 1.46501 * 120.00114 * 89.99223 * 11 10 9 21 21 C 1.53009 * 109.46522 * 89.59161 * 20 11 10 22 22 C 1.53000 * 109.46910 * 179.97438 * 21 20 11 23 23 C 1.46765 * 111.35368 * 0.35168 * 9 7 6 24 24 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47125 * 300.00153 * 1 2 3 26 26 H 1.09000 * 109.47032 * 59.99820 * 1 2 3 27 27 H 1.08999 * 109.46501 * 240.00239 * 2 1 3 28 28 H 1.09000 * 109.47032 * 120.00180 * 2 1 3 29 29 H 1.08996 * 109.47420 * 60.00028 * 3 2 1 30 30 H 1.09000 * 109.47489 * 299.99900 * 3 2 1 31 31 H 1.09004 * 110.48226 * 335.75509 * 6 4 3 32 32 H 1.08999 * 110.49225 * 98.26544 * 6 4 3 33 33 H 1.08996 * 109.47396 * 29.95450 * 10 9 7 34 34 H 1.08994 * 109.47620 * 149.95821 * 10 9 7 35 35 H 0.96999 * 120.00016 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47532 * 209.58714 * 20 11 10 37 37 H 1.08992 * 109.47147 * 329.59272 * 20 11 10 38 38 H 1.09000 * 109.46852 * 299.99969 * 21 20 11 39 39 H 1.09001 * 109.47128 * 60.00131 * 21 20 11 40 40 H 1.09004 * 109.46860 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47054 * 300.00122 * 22 21 20 42 42 H 1.09001 * 109.47074 * 60.00152 * 22 21 20 43 43 H 1.08994 * 110.25020 * 224.02005 * 23 9 7 44 44 H 1.08999 * 110.24261 * 102.01856 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9582 0.8933 -0.8585 6 6 4.1240 0.8655 1.3227 7 6 5.3508 1.7024 1.6110 8 8 6.2260 1.4045 2.3959 9 7 5.3255 2.8260 0.8679 10 6 6.3663 3.8566 0.8940 11 7 6.0392 4.8554 1.9147 12 6 5.2849 5.9498 1.5850 13 1 4.5993 6.3701 2.3058 14 6 5.4017 6.5187 0.3242 15 7 6.5004 6.3419 -0.3785 16 14 3.9992 7.5353 -0.3752 17 1 3.7333 8.6921 0.5172 18 1 4.3705 8.0279 -1.7260 19 1 2.7790 6.6946 -0.4726 20 6 6.5187 4.6831 3.2882 21 6 7.8913 5.3430 3.4356 22 6 8.3919 5.1638 4.8702 23 6 4.1228 2.8847 0.0287 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9564 -0.8900 31 1 3.3914 0.9743 2.1225 32 1 4.3976 -0.1821 1.1971 33 1 7.3264 3.3976 1.1295 34 1 6.4240 4.3396 -0.0814 35 1 6.5818 6.7391 -1.2596 36 1 5.8159 5.1483 3.9795 37 1 6.6006 3.6200 3.5139 38 1 8.5941 4.8779 2.7443 39 1 7.8094 6.4063 3.2099 40 1 9.3695 5.6343 4.9753 41 1 7.6889 5.6291 5.5611 42 1 8.4737 4.1006 5.0963 43 1 4.3814 3.2101 -0.9789 44 1 3.3893 3.5610 0.4676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173320708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:21 Heat of formation + Delta-G solvation = -41.498606 kcal Electronic energy + Delta-G solvation = -21726.237749 eV Core-core repulsion = 18678.141738 eV Total energy + Delta-G solvation = -3048.096011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.71920 -36.48156 -36.07007 -34.32844 -32.84131 -31.47251 -30.13611 -27.77155 -26.24664 -25.55286 -24.59746 -21.95402 -21.67405 -20.27150 -19.98890 -18.71663 -17.03519 -16.04246 -15.59138 -15.00846 -14.86716 -14.45442 -14.20856 -13.79770 -13.60752 -13.30187 -13.15213 -13.09261 -12.65075 -12.51349 -12.35679 -11.91290 -11.59320 -11.43373 -11.36891 -11.18882 -11.00271 -10.81356 -10.69733 -10.58254 -10.56832 -10.51532 -10.30604 -10.10037 -9.98203 -9.63434 -9.02942 -8.60687 -7.87426 -6.81878 -5.95490 -3.44702 3.27160 3.33053 3.35688 3.37518 4.01584 4.40718 4.65047 4.80843 4.87550 5.10245 5.16510 5.23269 5.32879 5.48071 5.51460 5.63384 5.75005 5.80694 5.84153 5.88347 5.91888 6.00384 6.00877 6.10287 6.15018 6.20465 6.29584 6.31195 6.42443 6.52298 6.54719 6.63939 6.73864 6.78227 7.10691 7.14673 7.32007 7.63986 7.72864 8.07009 8.40636 9.02024 9.05674 9.68824 10.27521 11.08993 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.006884 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.910877 B = 4066.592754 C = 5509.064930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.103 4.103 5 H 0.083 0.917 6 C -0.151 4.151 7 C 0.507 3.493 8 O -0.555 6.555 9 N -0.607 5.607 10 C 0.352 3.648 11 N -0.575 5.575 12 C -0.258 4.258 13 H 0.062 0.938 14 C 0.013 3.987 15 N -0.889 5.889 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.281 1.281 20 C 0.140 3.860 21 C -0.136 4.136 22 C -0.146 4.146 23 C 0.112 3.888 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.121 0.879 35 H 0.258 0.742 36 H 0.038 0.962 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.069 0.931 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.543 -9.261 -0.576 11.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.146 4.146 4 C -0.122 4.122 5 H 0.102 0.898 6 C -0.192 4.192 7 C 0.294 3.706 8 O -0.435 6.435 9 N -0.344 5.344 10 C 0.146 3.854 11 N -0.295 5.295 12 C -0.388 4.388 13 H 0.079 0.921 14 C -0.187 4.187 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.207 1.207 20 C 0.015 3.985 21 C -0.175 4.175 22 C -0.205 4.205 23 C -0.013 4.013 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.138 0.862 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.933 -9.201 -0.332 11.526 hybrid contribution -0.780 0.698 -0.454 1.141 sum -7.714 -8.503 -0.786 11.507 Atomic orbital electron populations 1.21780 0.96132 1.01279 1.01819 1.21537 0.95533 0.97023 1.02079 1.21593 0.93622 0.96745 1.02633 1.22226 0.95716 0.96739 0.97505 0.89831 1.22455 0.97743 1.00398 0.98592 1.20923 0.86716 0.82902 0.80085 1.90627 1.41004 1.74993 1.36837 1.50339 1.23047 1.20764 1.40242 1.21309 0.85418 0.81144 0.97572 1.44439 1.58952 1.20834 1.05294 1.19074 1.15026 1.05827 0.98850 0.92059 1.25073 0.96322 0.97810 0.99527 1.69923 1.23686 1.46558 1.13051 0.86471 0.82561 0.80208 0.78245 1.20681 1.21523 1.20738 1.21068 0.92704 0.97617 0.87154 1.22007 0.99101 1.01954 0.94483 1.21742 0.99857 1.00685 0.98178 1.22004 0.88218 0.95257 0.95820 0.93049 0.92759 0.92836 0.92107 0.91865 0.91478 0.91504 0.88778 0.89432 0.92984 0.86190 0.93208 0.94323 0.93526 0.93086 0.92048 0.93867 0.93524 0.93469 0.91219 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.16 5.78 -26.73 -0.15 -1.32 16 3 C -0.11 -1.19 4.56 -26.73 -0.12 -1.31 16 4 C -0.10 -1.35 3.18 -88.99 -0.28 -1.63 16 5 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 6 C -0.15 -2.22 5.58 -26.74 -0.15 -2.37 16 7 C 0.51 10.17 8.04 -10.71 -0.09 10.09 16 8 O -0.56 -13.02 16.74 5.56 0.09 -12.93 16 9 N -0.61 -12.49 3.18 -176.04 -0.56 -13.05 16 10 C 0.35 8.37 6.09 -63.75 -0.39 7.98 16 11 N -0.58 -14.29 2.69 -176.95 -0.48 -14.77 16 12 C -0.26 -6.79 9.48 -15.06 -0.14 -6.93 16 13 H 0.06 1.64 7.93 -52.49 -0.42 1.22 16 14 C 0.01 0.33 4.94 -17.43 -0.09 0.24 16 15 N -0.89 -24.12 11.34 55.49 0.63 -23.49 16 16 Si 0.90 20.45 29.61 -169.99 -5.03 15.42 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 20 C 0.14 3.20 5.67 -4.04 -0.02 3.18 16 21 C -0.14 -2.85 6.26 -26.73 -0.17 -3.02 16 22 C -0.15 -2.51 9.91 37.16 0.37 -2.14 16 23 C 0.11 1.92 6.92 -3.12 -0.02 1.90 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 29 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.30 7.86 -51.93 -0.41 0.90 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.05 1.28 7.87 -51.93 -0.41 0.87 16 34 H 0.12 3.08 5.33 -51.93 -0.28 2.80 16 35 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 37 H 0.05 1.09 7.18 -51.93 -0.37 0.72 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.27 7.89 -51.93 -0.41 0.87 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -28.94 353.04 -9.06 -38.01 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.15 Total: 1.75 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.89 Total: 3.73 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.41 Total: -51.30 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.94 -9.06 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173320708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.490 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds