Wall clock time and date at job start Mon Mar 30 2020 04:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46772 * 2 1 4 4 C 1.53002 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.09008 * 110.88254 * 57.35531 * 4 3 2 6 6 C 1.54629 * 110.96943 * 293.55070 * 4 3 2 7 7 C 1.51283 * 104.31205 * 217.01673 * 6 4 3 8 8 O 1.21279 * 124.94192 * 196.27232 * 7 6 4 9 9 N 1.34742 * 109.93407 * 16.31007 * 7 6 4 10 10 C 1.46496 * 124.29726 * 180.39346 * 9 7 6 11 11 N 1.46503 * 109.47266 * 269.95801 * 10 9 7 12 12 C 1.36943 * 120.00068 * 270.00550 * 11 10 9 13 13 H 1.07996 * 120.00182 * 146.04641 * 12 11 10 14 14 C 1.38813 * 119.99345 * 326.04642 * 12 11 10 15 15 N 1.31615 * 120.00351 * 336.65214 * 14 12 11 16 16 Si 1.86803 * 119.99719 * 156.65175 * 14 12 11 17 17 H 1.48499 * 109.47240 * 59.99855 * 16 14 12 18 18 H 1.48496 * 109.47384 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47218 * 300.00022 * 16 14 12 20 20 C 1.46501 * 120.00114 * 89.99223 * 11 10 9 21 21 C 1.53009 * 109.46522 * 89.59161 * 20 11 10 22 22 C 1.53000 * 109.46910 * 179.97438 * 21 20 11 23 23 C 1.46765 * 111.35368 * 0.35168 * 9 7 6 24 24 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47125 * 300.00153 * 1 2 3 26 26 H 1.09000 * 109.47032 * 59.99820 * 1 2 3 27 27 H 1.08999 * 109.46501 * 240.00239 * 2 1 3 28 28 H 1.09000 * 109.47032 * 120.00180 * 2 1 3 29 29 H 1.08996 * 109.47420 * 60.00028 * 3 2 1 30 30 H 1.09000 * 109.47489 * 299.99900 * 3 2 1 31 31 H 1.09004 * 110.48226 * 335.75509 * 6 4 3 32 32 H 1.08999 * 110.49225 * 98.26544 * 6 4 3 33 33 H 1.08996 * 109.47396 * 29.95450 * 10 9 7 34 34 H 1.08994 * 109.47620 * 149.95821 * 10 9 7 35 35 H 0.96999 * 120.00016 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47532 * 209.58714 * 20 11 10 37 37 H 1.08992 * 109.47147 * 329.59272 * 20 11 10 38 38 H 1.09000 * 109.46852 * 299.99969 * 21 20 11 39 39 H 1.09001 * 109.47128 * 60.00131 * 21 20 11 40 40 H 1.09004 * 109.46860 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47054 * 300.00122 * 22 21 20 42 42 H 1.09001 * 109.47074 * 60.00152 * 22 21 20 43 43 H 1.08994 * 110.25020 * 224.02005 * 23 9 7 44 44 H 1.08999 * 110.24261 * 102.01856 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9582 0.8933 -0.8585 6 6 4.1240 0.8655 1.3227 7 6 5.3508 1.7024 1.6110 8 8 6.2260 1.4045 2.3959 9 7 5.3255 2.8260 0.8679 10 6 6.3663 3.8566 0.8940 11 7 6.0392 4.8554 1.9147 12 6 5.2849 5.9498 1.5850 13 1 4.5993 6.3701 2.3058 14 6 5.4017 6.5187 0.3242 15 7 6.5004 6.3419 -0.3785 16 14 3.9992 7.5353 -0.3752 17 1 3.7333 8.6921 0.5172 18 1 4.3705 8.0279 -1.7260 19 1 2.7790 6.6946 -0.4726 20 6 6.5187 4.6831 3.2882 21 6 7.8913 5.3430 3.4356 22 6 8.3919 5.1638 4.8702 23 6 4.1228 2.8847 0.0287 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9564 -0.8900 31 1 3.3914 0.9743 2.1225 32 1 4.3976 -0.1821 1.1971 33 1 7.3264 3.3976 1.1295 34 1 6.4240 4.3396 -0.0814 35 1 6.5818 6.7391 -1.2596 36 1 5.8159 5.1483 3.9795 37 1 6.6006 3.6200 3.5139 38 1 8.5941 4.8779 2.7443 39 1 7.8094 6.4063 3.2099 40 1 9.3695 5.6343 4.9753 41 1 7.6889 5.6291 5.5611 42 1 8.4737 4.1006 5.0963 43 1 4.3814 3.2101 -0.9789 44 1 3.3893 3.5610 0.4676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173320708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:21 Heat of formation + Delta-G solvation = -56.052979 kcal Electronic energy + Delta-G solvation = -21726.868874 eV Core-core repulsion = 18678.141738 eV Total energy + Delta-G solvation = -3048.727136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23124 -37.94389 -37.82264 -35.58563 -34.61544 -33.00110 -31.73211 -29.02369 -27.75007 -27.36794 -26.03046 -23.74195 -22.58263 -21.86912 -21.26085 -20.36209 -18.88983 -17.41651 -17.26340 -16.78040 -16.33167 -15.96162 -15.71292 -15.47695 -14.97526 -14.67323 -14.59426 -14.32722 -14.07094 -13.89453 -13.59287 -13.35211 -13.16298 -12.95300 -12.74272 -12.57964 -12.44519 -12.31409 -12.24170 -12.14359 -12.02543 -11.85703 -11.65448 -11.45277 -11.43207 -11.28021 -10.68222 -10.57776 -9.56300 -8.80072 -7.95820 -5.50055 1.45831 1.48644 1.55929 1.73158 2.37682 2.52784 3.22154 3.52332 3.58273 3.65787 3.83166 4.17691 4.21844 4.31672 4.35895 4.40067 4.43720 4.56395 4.63433 4.71155 4.75272 4.75993 4.83515 4.87873 4.89524 5.00595 5.05716 5.09595 5.14260 5.17465 5.22552 5.25857 5.37131 5.39931 5.50462 5.51942 5.58318 5.64891 5.90300 6.29983 6.56705 7.04541 7.37780 7.70723 8.28398 9.07120 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.006884 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.910877 B = 4066.592754 C = 5509.064930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.083 4.083 5 H 0.103 0.897 6 C -0.136 4.136 7 C 0.494 3.506 8 O -0.596 6.596 9 N -0.616 5.616 10 C 0.365 3.635 11 N -0.590 5.590 12 C -0.271 4.271 13 H 0.054 0.946 14 C -0.023 4.023 15 N -0.915 5.915 16 Si 0.956 3.044 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.269 1.269 20 C 0.144 3.856 21 C -0.126 4.126 22 C -0.136 4.136 23 C 0.108 3.892 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.031 0.969 34 H 0.103 0.897 35 H 0.257 0.743 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.032 0.968 39 H 0.040 0.960 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 -10.293 -0.824 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.141 4.141 4 C -0.102 4.102 5 H 0.121 0.879 6 C -0.176 4.176 7 C 0.283 3.717 8 O -0.478 6.478 9 N -0.352 5.352 10 C 0.157 3.843 11 N -0.311 5.311 12 C -0.401 4.401 13 H 0.071 0.929 14 C -0.221 4.221 15 N -0.559 5.559 16 Si 0.784 3.216 17 H -0.207 1.207 18 H -0.216 1.216 19 H -0.195 1.195 20 C 0.018 3.982 21 C -0.166 4.166 22 C -0.194 4.194 23 C -0.016 4.016 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.049 0.951 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.804 -10.258 -0.585 13.531 hybrid contribution -0.169 1.017 -0.367 1.094 sum -8.973 -9.241 -0.952 12.916 Atomic orbital electron populations 1.21776 0.95515 1.01942 1.01794 1.21513 0.96055 0.95576 1.02691 1.21571 0.91589 0.98215 1.02726 1.22204 0.97188 0.93448 0.97383 0.87917 1.22428 0.94969 1.00551 0.99671 1.21848 0.87784 0.83043 0.78991 1.90595 1.42961 1.75829 1.38402 1.50150 1.23490 1.20396 1.41149 1.20818 0.85706 0.81397 0.96363 1.44573 1.59509 1.21107 1.05928 1.19166 1.15212 1.06430 0.99247 0.92864 1.25701 0.98067 0.98869 0.99477 1.70046 1.25170 1.47527 1.13148 0.85532 0.80129 0.78800 0.77177 1.20677 1.21598 1.19487 1.21051 0.93590 0.97060 0.86459 1.21858 0.97854 0.99951 0.96953 1.21650 1.01049 1.01464 0.95266 1.22150 0.86562 0.98109 0.94761 0.92083 0.93068 0.92644 0.91157 0.91607 0.92125 0.90822 0.87453 0.86929 0.95052 0.88028 0.93358 0.94238 0.94537 0.94876 0.94113 0.91890 0.92244 0.92912 0.91420 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 71.98 0.71 -1.43 16 2 C -0.12 -1.84 5.78 30.60 0.18 -1.66 16 3 C -0.10 -1.97 4.56 30.59 0.14 -1.83 16 4 C -0.08 -1.98 3.18 -9.74 -0.03 -2.01 16 5 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 6 C -0.14 -3.67 5.58 30.59 0.17 -3.50 16 7 C 0.49 19.75 8.04 87.85 0.71 20.45 16 8 O -0.60 -28.35 16.74 -3.03 -0.05 -28.40 16 9 N -0.62 -25.69 3.18 -829.27 -2.64 -28.32 16 10 C 0.36 18.03 6.09 170.96 1.04 19.07 16 11 N -0.59 -30.24 2.69 -713.75 -1.92 -32.16 16 12 C -0.27 -14.52 9.48 84.03 0.80 -13.72 16 13 H 0.05 2.90 7.93 -2.91 -0.02 2.87 16 14 C -0.02 -1.23 4.94 84.86 0.42 -0.81 16 15 N -0.92 -50.67 11.34 21.65 0.25 -50.42 16 16 Si 0.96 42.02 29.61 68.60 2.03 44.05 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 C 0.14 6.75 5.67 86.38 0.49 7.24 16 21 C -0.13 -5.44 6.26 30.60 0.19 -5.25 16 22 C -0.14 -4.55 9.91 71.98 0.71 -3.83 16 23 C 0.11 3.64 6.92 86.83 0.60 4.24 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.98 7.51 -2.39 -0.02 0.97 16 29 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.11 2.68 7.86 -2.38 -0.02 2.66 16 32 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.03 1.64 7.87 -2.39 -0.02 1.62 16 34 H 0.10 5.43 5.33 -2.39 -0.01 5.42 16 35 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 36 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 37 H 0.04 1.76 7.18 -2.39 -0.02 1.75 16 38 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.04 1.89 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.06 2.04 7.89 -2.39 -0.02 2.02 16 Total: -1.00 -63.88 353.04 4.73 -59.15 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.93 Total: 19.15 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.13 Total: 16.95 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -4.31 Total: -110.91 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.05 Total: -28.40 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -63.88 4.73 -59.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173320708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.100 kcal (2) G-P(sol) polarization free energy of solvation -63.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds