Wall clock time and date at job start Mon Mar 30 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 H 1.08999 * 109.47033 * 55.00287 * 3 2 1 5 5 C 1.50701 * 109.46966 * 175.00008 * 3 2 1 6 6 H 1.08005 * 119.99795 * 120.00495 * 5 3 2 7 7 C 1.37872 * 120.00344 * 299.99923 * 5 3 2 8 8 N 1.31521 * 119.99456 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00493 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46892 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47253 * 119.99941 * 9 7 5 12 12 H 1.48498 * 109.47226 * 240.00076 * 9 7 5 13 13 N 1.46499 * 109.47277 * 295.00274 * 3 2 1 14 14 C 1.34769 * 120.00353 * 84.99572 * 13 3 2 15 15 O 1.21279 * 119.99811 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00440 * 179.97438 * 14 13 3 17 17 N 1.46905 * 109.46878 * 325.00416 * 16 14 13 18 18 C 1.53000 * 109.46735 * 85.00032 * 16 14 13 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 16 14 20 20 C 1.53006 * 109.47127 * 300.00449 * 19 18 16 21 21 C 1.52997 * 109.47164 * 59.99836 * 20 19 18 22 22 H 1.09001 * 109.47375 * 59.99966 * 21 20 19 23 23 C 1.52996 * 109.46975 * 180.02562 * 21 20 19 24 24 C 1.52996 * 109.47306 * 205.00160 * 16 14 13 25 25 H 1.09001 * 109.47032 * 59.99721 * 1 2 3 26 26 H 1.08997 * 109.47009 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46982 * 300.00299 * 1 2 3 28 28 H 1.09006 * 109.46946 * 240.00339 * 2 1 3 29 29 H 1.08997 * 109.47444 * 120.00029 * 2 1 3 30 30 H 0.97004 * 119.99583 * 180.02562 * 8 7 5 31 31 H 0.97007 * 119.99777 * 264.99931 * 13 3 2 32 32 H 1.00900 * 110.99847 * 59.99680 * 17 16 14 33 33 H 1.00898 * 110.99713 * 183.94715 * 17 16 14 34 34 H 1.09002 * 109.47398 * 300.00410 * 18 16 14 35 35 H 1.09001 * 109.47194 * 60.00591 * 18 16 14 36 36 H 1.08998 * 109.47533 * 59.99948 * 19 18 16 37 37 H 1.08996 * 109.47853 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.47002 * 299.99574 * 20 19 18 39 39 H 1.09000 * 109.47050 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47261 * 180.02562 * 23 21 20 41 41 H 1.09004 * 109.47368 * 299.99783 * 23 21 20 42 42 H 1.09001 * 109.47372 * 59.99628 * 23 21 20 43 43 H 1.08992 * 109.47554 * 299.99873 * 24 16 14 44 44 H 1.09004 * 109.47108 * 60.00124 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8811 1.3818 10 1 6.5987 1.5472 0.1947 11 1 6.3990 1.6165 2.6102 12 1 6.4970 -0.5176 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6327 -0.4341 16 6 0.0367 3.3388 -2.6544 17 7 1.2118 3.9870 -3.2518 18 6 -0.5191 2.2954 -3.6258 19 6 -0.9231 2.9798 -4.9331 20 6 -1.9956 4.0330 -4.6472 21 6 -1.4398 5.0763 -3.6759 22 1 -0.5676 5.5570 -4.1189 23 6 -2.5124 6.1290 -3.3895 24 6 -1.0360 4.3914 -2.3680 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8293 -0.0613 2.9498 31 1 2.2720 2.1232 -1.9978 32 1 1.9351 3.3121 -3.4504 33 1 0.9583 4.5003 -4.0826 34 1 0.2451 1.5454 -3.8298 35 1 -1.3911 1.8144 -3.1825 36 1 -0.0510 3.4606 -5.3762 37 1 -1.3195 2.2367 -5.6250 38 1 -2.8678 3.5523 -4.2041 39 1 -2.2831 4.5209 -5.5785 40 1 -2.1164 6.8725 -2.6979 41 1 -2.8007 6.6167 -4.3207 42 1 -3.3844 5.6480 -2.9463 43 1 -1.9079 3.9105 -1.9249 44 1 -0.6400 5.1347 -1.6760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226972054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:15 Heat of formation + Delta-G solvation = -87.175440 kcal Electronic energy + Delta-G solvation = -22118.285431 eV Core-core repulsion = 19068.208724 eV Total energy + Delta-G solvation = -3050.076707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.57047 -39.32751 -36.87726 -35.09642 -34.07670 -32.85356 -32.39497 -29.70172 -28.96551 -27.34001 -25.38285 -24.19334 -22.72556 -21.76775 -21.01095 -19.95419 -18.87086 -17.60252 -17.42538 -16.65178 -16.42362 -15.99733 -15.80741 -15.40146 -15.01852 -14.76193 -14.60872 -14.28558 -13.97759 -13.52746 -13.36293 -13.33731 -13.17922 -12.89976 -12.87958 -12.71965 -12.70286 -12.39127 -12.15973 -12.05150 -11.93010 -11.60640 -11.47761 -11.37195 -11.09432 -11.03274 -10.58932 -10.41989 -9.64737 -9.59001 -8.15624 -6.32848 1.43667 1.45073 1.56962 1.86789 2.36842 2.65220 3.13729 3.49765 3.69128 3.74952 3.79347 4.09409 4.15382 4.32356 4.44706 4.46649 4.48679 4.54898 4.59179 4.72648 4.75262 4.81835 4.97138 5.03420 5.04687 5.08271 5.14011 5.22847 5.24524 5.31418 5.36479 5.42014 5.43020 5.56168 5.58614 5.65222 5.78948 5.92575 6.11555 6.17496 6.55928 6.75881 7.03723 7.34551 7.61759 8.89960 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029814 B = 0.004859 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.919235 B = 5761.382582 C = 6008.709991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.277 3.723 4 H -0.008 1.008 5 C -0.545 4.545 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.696 5.696 14 C 0.510 3.490 15 O -0.592 6.592 16 C 0.118 3.882 17 N -0.833 5.833 18 C -0.140 4.140 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.086 4.086 22 H 0.084 0.916 23 C -0.145 4.145 24 C -0.083 4.083 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.023 0.977 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.264 0.736 31 H 0.399 0.601 32 H 0.346 0.654 33 H 0.360 0.640 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 6.492 -17.640 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 C 0.174 3.826 4 H 0.010 0.990 5 C -0.583 4.583 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.344 5.344 14 C 0.296 3.704 15 O -0.472 6.472 16 C 0.022 3.978 17 N -0.370 5.370 18 C -0.180 4.180 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.104 4.104 22 H 0.102 0.898 23 C -0.202 4.202 24 C -0.122 4.122 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.234 0.766 32 H 0.161 0.839 33 H 0.178 0.822 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.819 6.781 -16.117 19.154 hybrid contribution 0.930 -0.874 -0.028 1.276 sum -6.889 5.907 -16.145 18.521 Atomic orbital electron populations 1.21673 0.97078 0.99075 1.00170 1.21771 0.93654 0.99151 1.01273 1.18349 0.93673 0.89080 0.81516 0.99014 1.21604 0.91410 1.38623 1.06694 0.91140 1.25777 1.03335 0.94393 0.95001 1.70067 1.36981 1.38530 1.09893 0.85317 0.79129 0.77814 0.78184 1.18408 1.21145 1.20355 1.46209 1.15405 1.55601 1.17224 1.21058 0.81654 0.77908 0.89772 1.90637 1.52773 1.61743 1.42079 1.20807 0.92173 0.94137 0.90700 1.58849 1.09602 1.31805 1.36734 1.22232 1.01408 0.97652 0.96744 1.21527 0.99673 0.98532 0.95104 1.21652 0.97965 0.95981 0.99561 1.21153 0.99224 0.96030 0.94021 0.89775 1.21795 0.98132 0.98146 1.02145 1.21375 0.96240 0.96232 0.98357 0.93778 0.93518 0.95802 0.93998 0.91051 0.92669 0.76589 0.83878 0.82170 0.91348 0.92538 0.90385 0.90062 0.92553 0.89515 0.93225 0.90746 0.93198 0.92672 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.52 71.98 0.61 -5.05 16 2 C -0.12 -6.00 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.59 2.24 44.25 0.10 14.69 16 4 H -0.01 -0.51 7.58 -2.39 -0.02 -0.53 16 5 C -0.55 -29.36 8.73 25.60 0.22 -29.14 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 7 C 0.01 0.81 5.29 84.65 0.45 1.25 16 8 N -0.92 -53.23 11.29 21.45 0.24 -52.99 16 9 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 13 N -0.70 -29.43 4.92 -446.10 -2.19 -31.63 16 14 C 0.51 20.79 5.27 87.66 0.46 21.25 16 15 O -0.59 -29.28 13.23 -3.03 -0.04 -29.32 16 16 C 0.12 3.37 0.88 2.78 0.00 3.37 16 17 N -0.83 -19.52 8.61 -154.51 -1.33 -20.85 16 18 C -0.14 -3.29 4.87 30.59 0.15 -3.14 16 19 C -0.11 -1.72 5.66 30.60 0.17 -1.55 16 20 C -0.11 -1.77 5.20 30.60 0.16 -1.61 16 21 C -0.09 -1.60 2.46 -10.78 -0.03 -1.62 16 22 H 0.08 1.39 6.57 -2.39 -0.02 1.38 16 23 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 24 C -0.08 -2.34 3.73 30.61 0.11 -2.23 16 25 H 0.04 1.95 5.65 -2.39 -0.01 1.94 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.02 1.18 7.85 -2.39 -0.02 1.17 16 28 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.40 14.44 6.92 -92.70 -0.64 13.79 16 32 H 0.35 7.51 7.44 -89.69 -0.67 6.84 16 33 H 0.36 6.27 5.44 -89.70 -0.49 5.78 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 0.97 6.76 -2.39 -0.02 0.95 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 1.75 7.87 -2.39 -0.02 1.73 16 44 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -67.46 330.04 1.15 -66.30 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -0.80 Total: 35.23 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 3.25 Total: -11.41 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -3.28 Total: -105.47 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.04 Total: -29.32 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -67.46 1.15 -66.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226972054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.871 kcal (2) G-P(sol) polarization free energy of solvation -67.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds