Wall clock time and date at job start Mon Mar 30 2020 05:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09002 * 109.47078 * 305.54842 * 3 2 1 5 5 C 1.50696 * 109.47160 * 185.54913 * 3 2 1 6 6 H 1.08003 * 120.00517 * 245.59877 * 5 3 2 7 7 C 1.37879 * 119.99945 * 65.60451 * 5 3 2 8 8 N 1.31514 * 119.99762 * 196.28228 * 7 5 3 9 9 Si 1.86793 * 120.00092 * 16.28235 * 7 5 3 10 10 H 1.48499 * 109.47180 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47233 * 299.99848 * 9 7 5 12 12 H 1.48501 * 109.47126 * 59.99867 * 9 7 5 13 13 N 1.46496 * 109.47221 * 65.54989 * 3 2 1 14 14 C 1.34780 * 120.00152 * 275.00228 * 13 3 2 15 15 O 1.21278 * 119.99690 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99974 * 179.97438 * 14 13 3 17 17 N 1.46893 * 109.47530 * 325.00015 * 16 14 13 18 18 C 1.53000 * 109.47149 * 85.00328 * 16 14 13 19 19 C 1.52994 * 109.47531 * 179.97438 * 18 16 14 20 20 C 1.53006 * 109.46883 * 300.00079 * 19 18 16 21 21 C 1.53003 * 109.47462 * 59.99617 * 20 19 18 22 22 H 1.08998 * 109.46514 * 59.99815 * 21 20 19 23 23 C 1.52995 * 109.47165 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.46901 * 300.00269 * 21 20 19 25 25 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 26 26 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 28 28 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 29 29 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 30 30 H 0.96999 * 120.00575 * 354.83297 * 8 7 5 31 31 H 0.97000 * 120.00343 * 94.99827 * 13 3 2 32 32 H 1.00902 * 110.99788 * 59.99548 * 17 16 14 33 33 H 1.00898 * 111.00141 * 183.95641 * 17 16 14 34 34 H 1.09005 * 109.46969 * 300.00123 * 18 16 14 35 35 H 1.09002 * 109.47291 * 59.99424 * 18 16 14 36 36 H 1.09002 * 109.47195 * 59.99498 * 19 18 16 37 37 H 1.08993 * 109.47413 * 179.97438 * 19 18 16 38 38 H 1.09005 * 109.46786 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.46731 * 299.99703 * 20 19 18 40 40 H 1.08997 * 109.47117 * 59.99622 * 23 21 20 41 41 H 1.08993 * 109.47170 * 179.97438 * 23 21 20 42 42 H 1.09005 * 109.46812 * 300.00264 * 23 21 20 43 43 H 1.09002 * 109.47278 * 299.99906 * 24 21 20 44 44 H 1.09002 * 109.46757 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8361 5 6 3.5406 1.4448 -0.1374 6 1 4.1567 1.8043 0.6736 7 6 4.1273 0.9879 -1.2985 8 7 5.4072 0.6861 -1.3139 9 14 3.1041 0.7976 -2.8497 10 1 3.9637 0.2944 -3.9511 11 1 2.0025 -0.1667 -2.6009 12 1 2.5327 2.1143 -3.2304 13 7 1.6637 2.0935 1.2573 14 6 0.4475 2.6600 1.3853 15 8 -0.3353 2.6312 0.4594 16 6 0.0603 3.3291 2.6789 17 7 0.6561 2.5987 3.8056 18 6 0.5703 4.7716 2.6795 19 6 0.1767 5.4512 3.9925 20 6 -1.3471 5.4489 4.1312 21 6 -1.8571 4.0064 4.1306 22 1 -1.4153 3.4646 4.9668 23 6 -3.3808 4.0042 4.2686 24 6 -1.4634 3.3269 2.8176 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.9549 0.8552 -0.5313 31 1 2.2899 2.1168 1.9978 32 1 1.6626 2.5860 3.7365 33 1 0.3590 2.9891 4.6872 34 1 1.6558 4.7733 2.5802 35 1 0.1282 5.3137 1.8435 36 1 0.6184 4.9093 4.8288 37 1 0.5404 6.4787 3.9931 38 1 -1.6275 5.9335 5.0665 39 1 -1.7888 5.9908 3.2949 40 1 -3.8222 4.5460 3.4322 41 1 -3.7442 2.9766 4.2677 42 1 -3.6616 4.4885 5.2039 43 1 -1.9051 3.8688 1.9813 44 1 -1.8264 2.2991 2.8173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226972062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:19 Heat of formation + Delta-G solvation = -66.931017 kcal Electronic energy + Delta-G solvation = -22191.702978 eV Core-core repulsion = 19142.504135 eV Total energy + Delta-G solvation = -3049.198843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.36924 -38.09728 -35.17738 -34.05281 -32.31016 -31.90661 -31.09041 -28.67971 -27.21746 -26.52100 -23.57696 -22.24649 -21.82075 -20.38129 -19.56314 -18.89164 -17.75212 -16.57002 -16.01199 -15.47490 -15.14367 -14.69402 -14.23474 -14.20623 -13.75511 -13.51034 -13.25725 -12.83937 -12.58000 -12.45692 -12.33468 -12.21580 -11.97992 -11.78804 -11.68519 -11.45530 -11.15177 -10.87826 -10.68324 -10.57690 -10.50339 -10.37653 -10.25927 -9.84968 -9.52654 -9.15174 -9.00920 -8.62120 -8.32215 -8.00638 -6.56195 -4.20122 3.26706 3.40487 3.45601 3.60694 3.96498 4.43212 4.51425 4.58396 4.61564 4.71225 4.98821 5.02458 5.18443 5.26167 5.29911 5.39474 5.45676 5.53904 5.62505 5.72665 5.81822 5.86670 5.97109 6.05433 6.09737 6.15287 6.16454 6.17098 6.30584 6.36293 6.41977 6.76294 6.86341 7.00465 7.05292 7.13525 7.34982 7.43572 7.47453 7.69986 8.24570 8.54789 8.73040 9.04594 9.48870 10.84219 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030574 B = 0.005255 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.601287 B = 5326.784902 C = 5701.327275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.246 3.754 4 H 0.040 0.960 5 C -0.615 4.615 6 H 0.060 0.940 7 C 0.039 3.961 8 N -0.900 5.900 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.268 1.268 12 H -0.281 1.281 13 N -0.693 5.693 14 C 0.519 3.481 15 O -0.551 6.551 16 C 0.106 3.894 17 N -0.831 5.831 18 C -0.146 4.146 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.094 4.094 22 H 0.072 0.928 23 C -0.145 4.145 24 C -0.085 4.085 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.268 0.732 31 H 0.389 0.611 32 H 0.341 0.659 33 H 0.343 0.657 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.291 7.705 12.440 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.143 3.857 4 H 0.057 0.943 5 C -0.653 4.653 6 H 0.078 0.922 7 C -0.167 4.167 8 N -0.533 5.533 9 Si 0.868 3.132 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.207 1.207 13 N -0.340 5.340 14 C 0.303 3.697 15 O -0.429 6.429 16 C 0.010 3.990 17 N -0.366 5.366 18 C -0.185 4.185 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.112 4.112 22 H 0.090 0.910 23 C -0.202 4.202 24 C -0.123 4.123 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.223 0.777 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.142 6.501 9.892 17.687 hybrid contribution 0.910 1.466 2.271 2.852 sum -12.232 7.967 12.162 19.001 Atomic orbital electron populations 1.21878 0.97382 0.98791 1.01994 1.22330 0.93850 0.99736 1.01690 1.19037 0.95653 0.88655 0.82365 0.94273 1.22093 0.89792 1.49397 1.04021 0.92202 1.25666 0.97524 0.92355 1.01193 1.70878 1.07087 1.41046 1.34279 0.84114 0.75514 0.77702 0.75862 1.20975 1.19450 1.20709 1.46200 1.14668 1.55545 1.17630 1.20111 0.82503 0.78760 0.88312 1.90650 1.51114 1.60090 1.41093 1.20997 0.96485 0.91410 0.90150 1.58962 1.13771 1.59319 1.04507 1.22260 1.01355 0.96056 0.98874 1.21525 0.96269 1.00633 0.97119 1.21649 0.95269 0.96693 1.01791 1.21172 0.96003 0.95764 0.98295 0.90990 1.21793 0.95194 1.01878 1.01381 1.21402 0.92010 1.01740 0.97197 0.93256 0.95229 0.92936 0.91519 0.93066 0.92172 0.77718 0.84544 0.84081 0.91414 0.90747 0.92184 0.91596 0.92048 0.91742 0.92660 0.92536 0.92905 0.90563 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.53 37.15 0.32 -2.71 16 2 C -0.14 -3.16 5.28 -26.73 -0.14 -3.30 16 3 C 0.25 5.95 1.82 -69.08 -0.13 5.83 16 4 H 0.04 1.04 6.26 -51.93 -0.32 0.71 16 5 C -0.62 -16.68 9.01 -34.44 -0.31 -16.99 16 6 H 0.06 1.69 7.96 -52.48 -0.42 1.27 16 7 C 0.04 1.10 5.32 -17.82 -0.09 1.01 16 8 N -0.90 -26.89 13.70 55.43 0.76 -26.13 16 9 Si 1.04 25.39 26.27 -169.99 -4.47 20.93 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.16 5.67 56.52 0.32 -5.84 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 N -0.69 -14.06 4.92 -54.93 -0.27 -14.33 16 14 C 0.52 9.89 5.30 -10.98 -0.06 9.83 16 15 O -0.55 -12.22 13.24 5.56 0.07 -12.14 16 16 C 0.11 1.48 0.88 -132.75 -0.12 1.36 16 17 N -0.83 -10.05 8.61 -0.19 0.00 -10.05 16 18 C -0.15 -1.81 4.87 -26.73 -0.13 -1.94 16 19 C -0.12 -1.11 5.66 -26.73 -0.15 -1.26 16 20 C -0.12 -1.05 5.20 -26.73 -0.14 -1.19 16 21 C -0.09 -0.92 2.46 -90.62 -0.22 -1.15 16 22 H 0.07 0.68 6.57 -51.93 -0.34 0.34 16 23 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 24 C -0.09 -1.13 3.73 -26.73 -0.10 -1.23 16 25 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.11 5.63 -51.93 -0.29 0.82 16 28 H 0.07 1.60 4.74 -51.93 -0.25 1.35 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 31 H 0.39 7.15 6.90 -40.82 -0.28 6.87 16 32 H 0.34 3.98 7.44 -39.29 -0.29 3.69 16 33 H 0.34 3.39 5.45 -39.29 -0.21 3.17 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.51 6.76 -51.93 -0.35 0.16 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 1.10 7.87 -51.93 -0.41 0.69 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 325.61 15.07 4.91 4.91 Total: -1.00 -30.38 325.61 -7.39 -37.78 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -7.46 Total: 11.73 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -0.93 Total: -12.69 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.49 Total: -50.51 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -4.47 Total: 20.93 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.38 -7.39 -37.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226972062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.155 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds