Wall clock time and date at job start Mon Mar 30 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47155 * 2 1 4 4 H 1.09004 * 109.46903 * 305.68720 * 3 2 1 5 5 C 1.50694 * 109.47255 * 185.68470 * 3 2 1 6 6 H 1.07999 * 120.00062 * 275.21554 * 5 3 2 7 7 C 1.37878 * 119.99995 * 95.21515 * 5 3 2 8 8 N 1.31515 * 120.00156 * 174.83604 * 7 5 3 9 9 Si 1.86802 * 120.00039 * 354.84216 * 7 5 3 10 10 H 1.48499 * 109.47287 * 94.73139 * 9 7 5 11 11 H 1.48500 * 109.46994 * 214.73258 * 9 7 5 12 12 H 1.48500 * 109.46837 * 334.72955 * 9 7 5 13 13 N 1.46498 * 109.46950 * 65.67805 * 3 2 1 14 14 C 1.34769 * 120.00684 * 275.00721 * 13 3 2 15 15 O 1.21278 * 119.99769 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00304 * 180.02562 * 14 13 3 17 17 N 1.46904 * 109.46970 * 319.94286 * 16 14 13 18 18 C 1.52995 * 109.47023 * 199.94578 * 16 14 13 19 19 C 1.52999 * 109.47286 * 299.99514 * 18 16 14 20 20 C 1.52998 * 109.47169 * 300.00454 * 19 18 16 21 21 C 1.52995 * 109.47387 * 59.99608 * 20 19 18 22 22 H 1.08998 * 109.47273 * 60.00479 * 21 20 19 23 23 C 1.53000 * 109.47345 * 180.02562 * 21 20 19 24 24 C 1.53000 * 109.47510 * 79.94127 * 16 14 13 25 25 H 1.09004 * 109.46579 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47603 * 299.99848 * 1 2 3 27 27 H 1.08997 * 109.47355 * 60.00473 * 1 2 3 28 28 H 1.09002 * 109.47014 * 240.00002 * 2 1 3 29 29 H 1.08998 * 109.46905 * 119.99802 * 2 1 3 30 30 H 0.97003 * 120.00314 * 179.97438 * 8 7 5 31 31 H 0.97004 * 119.99168 * 95.00156 * 13 3 2 32 32 H 1.00897 * 110.99957 * 300.00696 * 17 16 14 33 33 H 1.00896 * 110.99714 * 63.95304 * 17 16 14 34 34 H 1.09001 * 109.47684 * 59.99987 * 18 16 14 35 35 H 1.09002 * 109.47192 * 180.02562 * 18 16 14 36 36 H 1.08998 * 109.47094 * 59.99732 * 19 18 16 37 37 H 1.08998 * 109.47537 * 180.02562 * 19 18 16 38 38 H 1.09011 * 109.47117 * 299.99543 * 20 19 18 39 39 H 1.08998 * 109.47655 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.47269 * 180.02562 * 23 21 20 41 41 H 1.09005 * 109.47124 * 299.99553 * 23 21 20 42 42 H 1.08998 * 109.47358 * 60.00017 * 23 21 20 43 43 H 1.08998 * 109.47358 * 180.02562 * 24 16 14 44 44 H 1.09006 * 109.47153 * 300.00830 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5959 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1407 6 1 4.1649 1.3300 0.7329 7 6 4.1158 1.5937 -1.3848 8 7 5.4221 1.6978 -1.4969 9 14 3.0402 1.6477 -2.9111 10 1 2.7491 3.0610 -3.2618 11 1 3.7495 0.9935 -4.0399 12 1 1.7669 0.9314 -2.6448 13 7 1.6664 2.0925 1.2586 14 6 0.4505 2.6588 1.3898 15 8 -0.3343 2.6307 0.4656 16 6 0.0666 3.3279 2.6843 17 7 0.5632 2.5305 3.8138 18 6 -1.4571 3.4383 2.7690 19 6 -1.9744 4.2688 1.5927 20 6 -1.3578 5.6681 1.6461 21 6 0.1658 5.5576 1.5615 22 1 0.4436 5.0738 0.6251 23 6 0.7824 6.9568 1.6155 24 6 0.6831 4.7272 2.7378 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8270 1.8021 -2.3722 31 1 2.2943 2.1152 1.9977 32 1 0.1703 1.6013 3.8008 33 1 1.5716 2.4967 3.8167 34 1 -1.8964 2.4415 2.7310 35 1 -1.7348 3.9227 3.7051 36 1 -1.6966 3.7850 0.6564 37 1 -3.0598 4.3479 1.6533 38 1 -1.6356 6.1521 2.5826 39 1 -1.7259 6.2596 0.8079 40 1 1.8679 6.8782 1.5547 41 1 0.4140 7.5488 0.7776 42 1 0.5047 7.4404 2.5520 43 1 0.4058 5.2109 3.6744 44 1 1.7687 4.6484 2.6774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226972079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:24 Heat of formation + Delta-G solvation = -62.915950 kcal Electronic energy + Delta-G solvation = -22677.285959 eV Core-core repulsion = 19628.261222 eV Total energy + Delta-G solvation = -3049.024736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50151 -37.48983 -35.15091 -34.32169 -32.46149 -31.91980 -30.98510 -28.25659 -27.54510 -26.28739 -23.36604 -22.55872 -21.64351 -20.37562 -19.68565 -19.24237 -17.14033 -16.05825 -15.89648 -15.56548 -15.09454 -14.75252 -14.33369 -14.04824 -13.90358 -13.54504 -13.01518 -12.86098 -12.40840 -12.30354 -12.08976 -12.03946 -11.87434 -11.75932 -11.66094 -11.14104 -11.07614 -10.88182 -10.74372 -10.62278 -10.49684 -10.20918 -9.99302 -9.89367 -9.84321 -9.52787 -9.22773 -8.79006 -8.21964 -8.02284 -6.28689 -4.32047 3.17761 3.24061 3.30343 3.37476 3.88242 4.27867 4.46671 4.79992 4.87075 5.06100 5.13042 5.22472 5.38618 5.48089 5.58222 5.66330 5.74537 5.78494 5.91411 5.95451 5.97737 6.01540 6.05701 6.10784 6.18527 6.19954 6.37981 6.39977 6.46041 6.55397 6.57960 6.71052 6.80369 6.91719 6.97556 7.06584 7.22118 7.35135 7.38331 7.55223 8.08230 8.51535 8.72166 8.95897 9.33877 10.82915 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019580 B = 0.007038 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.673466 B = 3977.615336 C = 4373.772552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.239 3.761 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.077 0.923 7 C 0.082 3.918 8 N -0.887 5.887 9 Si 0.871 3.129 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.256 1.256 13 N -0.702 5.702 14 C 0.477 3.523 15 O -0.542 6.542 16 C 0.103 3.897 17 N -0.833 5.833 18 C -0.082 4.082 19 C -0.147 4.147 20 C -0.107 4.107 21 C -0.096 4.096 22 H 0.076 0.924 23 C -0.144 4.144 24 C -0.094 4.094 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.268 0.732 31 H 0.387 0.613 32 H 0.344 0.656 33 H 0.343 0.657 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.723 4.947 8.295 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.136 3.864 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.095 0.905 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.697 3.303 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.180 1.180 13 N -0.351 5.351 14 C 0.261 3.739 15 O -0.420 6.420 16 C 0.007 3.993 17 N -0.364 5.364 18 C -0.121 4.121 19 C -0.184 4.184 20 C -0.144 4.144 21 C -0.115 4.115 22 H 0.094 0.906 23 C -0.202 4.202 24 C -0.132 4.132 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.221 0.779 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.442 5.471 7.940 14.963 hybrid contribution 0.457 -0.653 -1.203 1.443 sum -10.985 4.818 6.737 13.758 Atomic orbital electron populations 1.21892 0.97402 0.98784 1.01978 1.22104 0.93705 0.99647 1.01088 1.19106 0.95460 0.88899 0.82917 0.93173 1.20997 0.88709 1.51891 0.95477 0.90487 1.24925 0.94905 0.93423 0.98992 1.69893 1.09785 1.47928 1.24700 0.86939 0.81471 0.79135 0.82739 1.20104 1.21065 1.17997 1.46663 1.14445 1.55965 1.18024 1.21542 0.82608 0.79247 0.90520 1.90459 1.50209 1.59397 1.41944 1.21142 0.97171 0.94375 0.86583 1.58935 1.13128 1.19728 1.44608 1.21241 0.91535 1.00400 0.98895 1.22093 0.98615 0.95457 1.02244 1.21526 0.94660 0.97359 1.00892 1.21153 0.95520 0.95762 0.99067 0.90556 1.21799 1.00812 0.96247 1.01307 1.21532 0.99936 0.92594 0.99185 0.95185 0.93269 0.93078 0.92155 0.93195 0.92258 0.77942 0.84287 0.84350 0.92364 0.91541 0.86745 0.93053 0.92781 0.92474 0.92596 0.92825 0.92935 0.90591 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.53 37.16 0.32 -2.45 16 2 C -0.13 -2.66 5.28 -26.73 -0.14 -2.80 16 3 C 0.24 5.43 1.78 -69.09 -0.12 5.30 16 4 H 0.05 1.26 5.03 -51.93 -0.26 1.00 16 5 C -0.53 -13.95 9.05 -34.44 -0.31 -14.26 16 6 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 9 Si 0.87 21.19 26.57 -169.99 -4.52 16.67 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.26 -6.08 6.21 56.52 0.35 -5.73 16 13 N -0.70 -13.25 4.93 -54.94 -0.27 -13.52 16 14 C 0.48 8.42 4.09 -10.99 -0.04 8.37 16 15 O -0.54 -10.96 10.03 5.56 0.06 -10.91 16 16 C 0.10 1.45 0.90 -132.75 -0.12 1.33 16 17 N -0.83 -10.06 8.76 -0.19 0.00 -10.07 16 18 C -0.08 -1.11 4.85 -26.73 -0.13 -1.24 16 19 C -0.15 -2.06 5.62 -26.73 -0.15 -2.21 16 20 C -0.11 -1.38 5.20 -26.73 -0.14 -1.51 16 21 C -0.10 -1.34 2.49 -90.62 -0.23 -1.57 16 22 H 0.08 1.32 7.00 -51.93 -0.36 0.96 16 23 C -0.14 -1.75 9.19 37.16 0.34 -1.41 16 24 C -0.09 -1.27 4.26 -26.73 -0.11 -1.38 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.93 5.63 -51.93 -0.29 0.64 16 27 H 0.05 1.06 7.89 -51.93 -0.41 0.65 16 28 H 0.06 1.33 7.33 -51.93 -0.38 0.94 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.39 6.61 7.24 -40.82 -0.30 6.32 16 32 H 0.34 4.02 8.99 -39.29 -0.35 3.66 16 33 H 0.34 3.93 7.66 -39.29 -0.30 3.63 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 1.96 4.93 -51.99 -0.26 1.70 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -28.56 327.16 -7.56 -36.12 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -7.59 Total: 13.45 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -0.94 Total: -11.66 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.50 Total: -48.60 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.06 Total: -10.91 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.52 Total: 16.67 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.56 -7.56 -36.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226972079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.793 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds