Wall clock time and date at job start Mon Mar 30 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47029 * 2 1 4 4 C 1.53001 * 109.47175 * 119.99985 * 2 1 3 5 5 N 1.46503 * 109.46934 * 175.00332 * 4 2 1 6 6 C 1.34779 * 119.99641 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00268 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99694 * 179.97438 * 6 5 4 9 9 N 1.46903 * 109.47065 * 176.59035 * 8 6 5 10 10 C 1.46901 * 111.00031 * 287.96090 * 9 8 6 11 11 C 1.46895 * 110.99838 * 164.00378 * 9 8 6 12 12 C 1.53006 * 109.46716 * 200.58726 * 11 9 8 13 13 C 1.50698 * 115.54952 * 57.45206 * 12 11 9 14 14 H 1.08005 * 119.99689 * 271.68324 * 13 12 11 15 15 C 1.37878 * 120.00221 * 91.40662 * 13 12 11 16 16 N 1.31518 * 119.99715 * 173.56405 * 15 13 12 17 17 Si 1.86791 * 119.99969 * 353.56875 * 15 13 12 18 18 H 1.48504 * 109.47459 * 93.80142 * 17 15 13 19 19 H 1.48497 * 109.47301 * 213.80026 * 17 15 13 20 20 H 1.48501 * 109.47487 * 333.80184 * 17 15 13 21 21 C 1.53004 * 117.49688 * 203.11853 * 12 11 9 22 22 C 1.52994 * 117.49920 * 271.77586 * 12 11 9 23 23 H 1.08997 * 109.46917 * 299.99739 * 1 2 3 24 24 H 1.08998 * 109.46962 * 59.99902 * 1 2 3 25 25 H 1.08993 * 109.46742 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47167 * 240.00315 * 2 1 3 27 27 H 1.08998 * 109.47328 * 299.99874 * 3 2 1 28 28 H 1.08997 * 109.47058 * 60.00347 * 3 2 1 29 29 H 1.08999 * 109.47180 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46735 * 55.00447 * 4 2 1 31 31 H 1.09001 * 109.46761 * 295.00066 * 4 2 1 32 32 H 0.96996 * 120.00289 * 359.97438 * 5 4 2 33 33 H 1.09000 * 109.46899 * 56.59724 * 8 6 5 34 34 H 1.08990 * 109.47256 * 296.59388 * 8 6 5 35 35 H 1.09001 * 109.46788 * 299.45068 * 10 9 8 36 36 H 1.08997 * 109.47303 * 59.45199 * 10 9 8 37 37 H 1.08998 * 109.46803 * 179.45626 * 10 9 8 38 38 H 1.09000 * 109.47203 * 80.59494 * 11 9 8 39 39 H 1.08994 * 109.47168 * 320.58569 * 11 9 8 40 40 H 0.97003 * 119.99345 * 180.02562 * 16 15 13 41 41 H 1.09003 * 117.49879 * 215.00671 * 21 12 11 42 42 H 1.09001 * 117.49957 * 0.02562 * 21 12 11 43 43 H 1.09005 * 117.50288 * 359.97438 * 22 12 11 44 44 H 1.09000 * 117.49830 * 144.97492 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1731 -1.4291 2.1907 7 8 3.5700 -1.8841 3.1395 8 6 5.6749 -1.5376 2.1301 9 7 6.1714 -2.1572 3.3661 10 6 6.0602 -1.2308 4.5008 11 6 7.5542 -2.6249 3.2019 12 6 7.8639 -3.6831 4.2627 13 6 6.9552 -4.8853 4.2663 14 1 6.0440 -4.8717 4.8460 15 6 7.2840 -6.0003 3.5249 16 7 6.5604 -7.0939 3.6258 17 14 8.7573 -5.9578 2.3775 18 1 9.9523 -6.4822 3.0864 19 1 8.4806 -6.7986 1.1852 20 1 9.0106 -4.5588 1.9486 21 6 9.3323 -3.9064 4.6301 22 6 8.3968 -3.1963 5.6117 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6055 -1.7198 1.2951 31 1 1.7516 -0.1583 2.1369 32 1 3.9824 -0.4627 0.4316 33 1 6.1071 -0.5427 2.0235 34 1 5.9607 -2.1513 1.2759 35 1 6.6559 -0.3399 4.3021 36 1 5.0166 -0.9472 4.6373 37 1 6.4256 -1.7181 5.4047 38 1 8.2382 -1.7841 3.3170 39 1 7.6755 -3.0589 2.2095 40 1 6.7920 -7.8784 3.1045 41 1 9.6410 -4.9229 4.8744 42 1 10.0776 -3.2992 4.1164 43 1 8.5271 -2.1221 5.7434 44 1 8.0897 -3.7452 6.5019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228283847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:14 Heat of formation + Delta-G solvation = -8.285892 kcal Electronic energy + Delta-G solvation = -21124.091587 eV Core-core repulsion = 18077.435787 eV Total energy + Delta-G solvation = -3046.655799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.58018 -37.71714 -36.65847 -34.90170 -33.16229 -31.86034 -28.53629 -27.48004 -27.19880 -25.75984 -25.12574 -22.06489 -21.52752 -20.67136 -19.88566 -18.82546 -16.83335 -16.24593 -15.96784 -15.61822 -15.12205 -14.67164 -14.38735 -14.26809 -13.92482 -13.68328 -13.35428 -13.11412 -12.68825 -12.55899 -12.44503 -12.34188 -12.12002 -11.58198 -11.39506 -11.33557 -11.25858 -11.08908 -10.97888 -10.90149 -10.40129 -10.33856 -10.02622 -9.58454 -9.31266 -8.90057 -8.84800 -8.40150 -8.33797 -7.51282 -5.89755 -3.86574 3.02690 3.26479 3.37307 3.46076 3.48609 4.48527 4.51203 4.56817 4.61533 4.76487 5.07665 5.12817 5.28347 5.33124 5.36278 5.42519 5.47230 5.53171 5.59808 5.65454 5.72215 5.82828 5.84580 5.93893 5.99302 6.03044 6.04950 6.08087 6.21760 6.27120 6.48348 6.54533 6.58313 6.67169 6.81054 7.15407 7.25671 7.53136 7.74163 7.83671 7.96904 8.59781 8.76585 9.21629 9.74031 11.23516 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024328 B = 0.004404 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.665555 B = 6356.388538 C = 6819.779232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.148 4.148 4 C 0.125 3.875 5 N -0.742 5.742 6 C 0.511 3.489 7 O -0.507 6.507 8 C 0.038 3.962 9 N -0.496 5.496 10 C 0.030 3.970 11 C 0.095 3.905 12 C 0.015 3.985 13 C -0.453 4.453 14 H 0.080 0.920 15 C 0.071 3.929 16 N -0.904 5.904 17 Si 0.877 3.123 18 H -0.282 1.282 19 H -0.297 1.297 20 H -0.263 1.263 21 C -0.204 4.204 22 C -0.184 4.184 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.395 0.605 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.006 0.994 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.011 0.989 39 H 0.068 0.932 40 H 0.260 0.740 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.247 17.436 -8.813 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.205 4.205 4 C 0.002 3.998 5 N -0.397 5.397 6 C 0.297 3.703 7 O -0.380 6.380 8 C -0.094 4.094 9 N -0.219 5.219 10 C -0.118 4.118 11 C -0.032 4.032 12 C 0.013 3.987 13 C -0.490 4.490 14 H 0.098 0.902 15 C -0.129 4.129 16 N -0.543 5.543 17 Si 0.706 3.294 18 H -0.209 1.209 19 H -0.224 1.224 20 H -0.187 1.187 21 C -0.242 4.242 22 C -0.221 4.221 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.229 0.771 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.025 0.975 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.029 0.971 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.016 16.483 -8.046 19.303 hybrid contribution 1.581 0.756 -1.320 2.194 sum -4.436 17.239 -9.366 20.114 Atomic orbital electron populations 1.21761 0.94166 1.02300 1.02062 1.21360 0.96657 0.96585 0.98144 1.21865 1.01070 0.95662 1.01941 1.21344 0.80328 1.00622 0.97552 1.46056 1.07419 1.61800 1.24440 1.20772 0.90185 0.77185 0.82165 1.90721 1.69793 1.44754 1.32690 1.21986 0.91981 0.98983 0.96437 1.61286 1.22275 1.36996 1.01294 1.22464 1.01177 0.92870 0.95280 1.21964 0.85618 0.95266 1.00399 1.19361 0.91408 0.96396 0.91519 1.20171 1.06627 0.94066 1.28180 0.90172 1.24948 0.96281 0.95184 0.96501 1.69921 1.40272 1.02468 1.41601 0.86914 0.83521 0.78130 0.80829 1.20884 1.22446 1.18742 1.22977 0.94579 1.00802 1.05845 1.22862 1.06090 0.97312 0.95845 0.92345 0.92329 0.92226 0.90574 0.92563 0.92451 0.92608 0.91548 0.91778 0.77111 0.93186 0.88252 0.97540 0.91474 0.90338 0.97086 0.91375 0.92999 0.89397 0.91315 0.91395 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.16 0.34 -0.68 16 2 C -0.11 -0.85 2.96 -90.62 -0.27 -1.12 16 3 C -0.15 -1.02 9.07 37.16 0.34 -0.68 16 4 C 0.13 1.39 5.07 -4.04 -0.02 1.37 16 5 N -0.74 -8.85 5.28 -60.29 -0.32 -9.17 16 6 C 0.51 8.46 7.51 -10.98 -0.08 8.38 16 7 O -0.51 -10.84 14.99 5.56 0.08 -10.76 16 8 C 0.04 0.61 5.46 -4.97 -0.03 0.58 16 9 N -0.50 -10.00 4.04 -244.38 -0.99 -10.98 16 10 C 0.03 0.55 9.01 60.07 0.54 1.09 16 11 C 0.09 1.97 4.66 -3.82 -0.02 1.95 16 12 C 0.01 0.34 0.77 -155.66 -0.12 0.22 16 13 C -0.45 -13.02 9.17 -34.44 -0.32 -13.34 16 14 H 0.08 2.62 8.06 -52.48 -0.42 2.19 16 15 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 16 N -0.90 -28.50 13.96 55.43 0.77 -27.72 16 17 Si 0.88 22.00 24.89 -169.99 -4.23 17.77 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 20 H -0.26 -6.11 5.66 56.52 0.32 -5.79 16 21 C -0.20 -4.42 7.60 -26.69 -0.20 -4.63 16 22 C -0.18 -3.84 8.47 -26.70 -0.23 -4.06 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.37 7.18 -51.93 -0.37 0.00 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.40 3.48 7.66 -40.82 -0.31 3.17 16 33 H 0.05 0.65 8.03 -51.93 -0.42 0.23 16 34 H 0.10 1.50 7.67 -51.93 -0.40 1.10 16 35 H 0.01 0.10 8.11 -51.93 -0.42 -0.32 16 36 H 0.07 1.25 6.53 -51.93 -0.34 0.91 16 37 H 0.08 1.51 5.97 -51.93 -0.31 1.20 16 38 H 0.01 0.21 7.95 -51.93 -0.41 -0.21 16 39 H 0.07 1.45 6.09 -51.93 -0.32 1.13 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.09 2.02 7.11 -51.93 -0.37 1.65 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.07 1.25 7.77 -51.93 -0.40 0.84 16 44 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -34.16 345.28 -7.57 -41.74 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.94 Total: 2.86 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.16 Total: -8.92 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.53 Total: -47.88 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.23 Total: 17.77 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.16 -7.57 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228283847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.452 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds