Wall clock time and date at job start Mon Mar 30 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47029 * 2 1 4 4 C 1.53001 * 109.47175 * 119.99985 * 2 1 3 5 5 N 1.46503 * 109.46934 * 175.00332 * 4 2 1 6 6 C 1.34779 * 119.99641 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00268 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99694 * 179.97438 * 6 5 4 9 9 N 1.46903 * 109.47065 * 176.59035 * 8 6 5 10 10 C 1.46901 * 111.00031 * 287.96090 * 9 8 6 11 11 C 1.46895 * 110.99838 * 164.00378 * 9 8 6 12 12 C 1.53006 * 109.46716 * 200.58726 * 11 9 8 13 13 C 1.50698 * 115.54952 * 57.45206 * 12 11 9 14 14 H 1.08005 * 119.99689 * 271.68324 * 13 12 11 15 15 C 1.37878 * 120.00221 * 91.40662 * 13 12 11 16 16 N 1.31518 * 119.99715 * 173.56405 * 15 13 12 17 17 Si 1.86791 * 119.99969 * 353.56875 * 15 13 12 18 18 H 1.48504 * 109.47459 * 93.80142 * 17 15 13 19 19 H 1.48497 * 109.47301 * 213.80026 * 17 15 13 20 20 H 1.48501 * 109.47487 * 333.80184 * 17 15 13 21 21 C 1.53004 * 117.49688 * 203.11853 * 12 11 9 22 22 C 1.52994 * 117.49920 * 271.77586 * 12 11 9 23 23 H 1.08997 * 109.46917 * 299.99739 * 1 2 3 24 24 H 1.08998 * 109.46962 * 59.99902 * 1 2 3 25 25 H 1.08993 * 109.46742 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47167 * 240.00315 * 2 1 3 27 27 H 1.08998 * 109.47328 * 299.99874 * 3 2 1 28 28 H 1.08997 * 109.47058 * 60.00347 * 3 2 1 29 29 H 1.08999 * 109.47180 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46735 * 55.00447 * 4 2 1 31 31 H 1.09001 * 109.46761 * 295.00066 * 4 2 1 32 32 H 0.96996 * 120.00289 * 359.97438 * 5 4 2 33 33 H 1.09000 * 109.46899 * 56.59724 * 8 6 5 34 34 H 1.08990 * 109.47256 * 296.59388 * 8 6 5 35 35 H 1.09001 * 109.46788 * 299.45068 * 10 9 8 36 36 H 1.08997 * 109.47303 * 59.45199 * 10 9 8 37 37 H 1.08998 * 109.46803 * 179.45626 * 10 9 8 38 38 H 1.09000 * 109.47203 * 80.59494 * 11 9 8 39 39 H 1.08994 * 109.47168 * 320.58569 * 11 9 8 40 40 H 0.97003 * 119.99345 * 180.02562 * 16 15 13 41 41 H 1.09003 * 117.49879 * 215.00671 * 21 12 11 42 42 H 1.09001 * 117.49957 * 0.02562 * 21 12 11 43 43 H 1.09005 * 117.50288 * 359.97438 * 22 12 11 44 44 H 1.09000 * 117.49830 * 144.97492 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1731 -1.4291 2.1907 7 8 3.5700 -1.8841 3.1395 8 6 5.6749 -1.5376 2.1301 9 7 6.1714 -2.1572 3.3661 10 6 6.0602 -1.2308 4.5008 11 6 7.5542 -2.6249 3.2019 12 6 7.8639 -3.6831 4.2627 13 6 6.9552 -4.8853 4.2663 14 1 6.0440 -4.8717 4.8460 15 6 7.2840 -6.0003 3.5249 16 7 6.5604 -7.0939 3.6258 17 14 8.7573 -5.9578 2.3775 18 1 9.9523 -6.4822 3.0864 19 1 8.4806 -6.7986 1.1852 20 1 9.0106 -4.5588 1.9486 21 6 9.3323 -3.9064 4.6301 22 6 8.3968 -3.1963 5.6117 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6055 -1.7198 1.2951 31 1 1.7516 -0.1583 2.1369 32 1 3.9824 -0.4627 0.4316 33 1 6.1071 -0.5427 2.0235 34 1 5.9607 -2.1513 1.2759 35 1 6.6559 -0.3399 4.3021 36 1 5.0166 -0.9472 4.6373 37 1 6.4256 -1.7181 5.4047 38 1 8.2382 -1.7841 3.3170 39 1 7.6755 -3.0589 2.2095 40 1 6.7920 -7.8784 3.1045 41 1 9.6410 -4.9229 4.8744 42 1 10.0776 -3.2992 4.1164 43 1 8.5271 -2.1221 5.7434 44 1 8.0897 -3.7452 6.5019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228283847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:14 Heat of formation + Delta-G solvation = -33.636355 kcal Electronic energy + Delta-G solvation = -21125.190865 eV Core-core repulsion = 18077.435787 eV Total energy + Delta-G solvation = -3047.755078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84997 -39.27030 -37.66919 -36.41895 -34.20412 -34.07746 -29.76868 -28.79353 -28.03758 -27.35618 -26.63460 -23.49735 -23.21589 -21.58525 -20.93532 -20.70868 -18.33823 -17.72080 -17.29998 -16.90121 -16.70780 -15.94823 -15.75155 -15.66692 -15.25496 -14.91716 -14.68660 -14.38849 -14.21289 -13.81172 -13.72688 -13.37542 -13.19460 -13.05472 -12.91623 -12.61953 -12.53418 -12.19855 -12.08573 -12.01735 -11.84583 -11.79040 -11.63688 -11.54884 -10.80219 -10.75360 -10.47786 -10.16972 -10.03582 -8.90022 -8.15526 -6.17538 1.40451 1.41764 1.55215 1.75149 2.16461 2.46560 3.05417 3.18638 3.48919 3.79108 3.95161 3.96499 4.13985 4.18282 4.29009 4.37410 4.45439 4.51544 4.53717 4.58720 4.60157 4.67769 4.70963 4.80356 4.85998 4.89368 4.94697 5.00554 5.04336 5.12708 5.19190 5.22043 5.37170 5.41920 5.46539 5.56328 5.56605 5.82450 6.25894 6.32533 6.54589 6.69702 6.89457 7.41097 7.47242 9.02615 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024328 B = 0.004404 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.665555 B = 6356.388538 C = 6819.779232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.146 4.146 4 C 0.124 3.876 5 N -0.720 5.720 6 C 0.507 3.493 7 O -0.569 6.569 8 C 0.039 3.961 9 N -0.539 5.539 10 C 0.039 3.961 11 C 0.104 3.896 12 C -0.015 4.015 13 C -0.449 4.449 14 H 0.014 0.986 15 C 0.006 3.994 16 N -0.964 5.964 17 Si 0.947 3.053 18 H -0.274 1.274 19 H -0.303 1.303 20 H -0.223 1.223 21 C -0.193 4.193 22 C -0.170 4.170 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.414 0.586 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.260 0.740 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 20.708 -11.215 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.203 4.203 4 C 0.000 4.000 5 N -0.375 5.375 6 C 0.294 3.706 7 O -0.446 6.446 8 C -0.092 4.092 9 N -0.263 5.263 10 C -0.109 4.109 11 C -0.023 4.023 12 C -0.016 4.016 13 C -0.488 4.488 14 H 0.032 0.968 15 C -0.189 4.189 16 N -0.606 5.606 17 Si 0.771 3.229 18 H -0.200 1.200 19 H -0.231 1.231 20 H -0.145 1.145 21 C -0.231 4.231 22 C -0.207 4.207 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.252 0.748 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.600 19.826 -10.487 22.716 hybrid contribution 0.676 -0.252 -0.478 0.865 sum -2.925 19.574 -10.964 22.626 Atomic orbital electron populations 1.21778 0.93626 1.02138 1.02809 1.21313 0.97038 0.97028 0.96380 1.21858 1.01384 0.94632 1.02457 1.21415 0.79708 0.99727 0.99151 1.45875 1.07810 1.59992 1.23776 1.21102 0.90851 0.76644 0.82046 1.90706 1.70938 1.47709 1.35292 1.22059 0.91170 1.01130 0.94854 1.61081 1.22502 1.39264 1.03444 1.22320 1.00827 0.93544 0.94210 1.21755 0.86696 0.95311 0.98549 1.19313 0.91855 0.95831 0.94600 1.20252 1.05220 0.96715 1.26567 0.96756 1.25911 1.00041 0.94406 0.98521 1.70121 1.43304 1.03640 1.43538 0.85797 0.79064 0.80145 0.77865 1.20019 1.23084 1.14545 1.23021 0.93924 1.00650 1.05485 1.22853 1.04702 0.99143 0.94024 0.92541 0.90636 0.92910 0.89626 0.91017 0.93002 0.92088 0.93834 0.92861 0.74833 0.88869 0.87299 0.94065 0.92924 0.92197 0.93437 0.91797 0.93158 0.91301 0.87404 0.87786 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.19 71.98 0.66 -1.21 16 2 C -0.10 -1.37 2.96 -10.79 -0.03 -1.40 16 3 C -0.15 -1.62 9.07 71.98 0.65 -0.97 16 4 C 0.12 2.73 5.07 86.38 0.44 3.16 16 5 N -0.72 -16.18 5.28 -463.05 -2.45 -18.63 16 6 C 0.51 16.50 7.51 87.66 0.66 17.16 16 7 O -0.57 -25.29 14.99 -3.03 -0.05 -25.33 16 8 C 0.04 1.14 5.46 85.56 0.47 1.60 16 9 N -0.54 -20.92 4.04 -927.07 -3.75 -24.67 16 10 C 0.04 1.36 9.01 127.69 1.15 2.51 16 11 C 0.10 3.97 4.66 86.31 0.40 4.37 16 12 C -0.01 -0.67 0.77 -52.93 -0.04 -0.71 16 13 C -0.45 -26.81 9.17 25.60 0.23 -26.57 16 14 H 0.01 1.00 8.06 -2.91 -0.02 0.98 16 15 C 0.01 0.34 5.46 84.65 0.46 0.80 16 16 N -0.96 -63.87 13.96 21.45 0.30 -63.57 16 17 Si 0.95 45.02 24.89 68.60 1.71 46.73 16 18 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 20 H -0.22 -9.11 5.66 99.48 0.56 -8.55 16 21 C -0.19 -7.71 7.60 30.62 0.23 -7.48 16 22 C -0.17 -6.76 8.47 30.62 0.26 -6.50 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.61 7.18 -2.39 -0.02 0.60 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.41 6.10 7.66 -92.71 -0.71 5.39 16 33 H 0.09 1.94 8.03 -2.39 -0.02 1.92 16 34 H 0.11 2.96 7.67 -2.39 -0.02 2.94 16 35 H 0.04 1.13 8.11 -2.39 -0.02 1.11 16 36 H 0.05 1.97 6.53 -2.39 -0.02 1.95 16 37 H 0.06 2.26 5.97 -2.39 -0.01 2.24 16 38 H 0.05 1.48 7.95 -2.39 -0.02 1.46 16 39 H 0.06 2.45 6.09 -2.39 -0.01 2.43 16 40 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 41 H 0.07 3.01 7.11 -2.39 -0.02 2.99 16 42 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 43 H 0.10 3.39 7.77 -2.38 -0.02 3.37 16 44 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -80.57 345.28 1.42 -79.15 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.11 Total: 21.56 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 5.55 Total: -15.24 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -5.89 Total: -106.87 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.05 Total: -25.33 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.71 Total: 46.73 kcal Total: -80.57 1.42 -79.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228283847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.517 kcal (2) G-P(sol) polarization free energy of solvation -80.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds