Wall clock time and date at job start Mon Mar 30 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47316 * 2 1 4 4 H 1.09004 * 109.47458 * 55.04750 * 3 2 1 5 5 C 1.50696 * 109.47420 * 175.04807 * 3 2 1 6 6 H 1.08002 * 120.00340 * 120.00058 * 5 3 2 7 7 C 1.37881 * 119.99993 * 299.99581 * 5 3 2 8 8 N 1.31509 * 120.00024 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99773 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47159 * 89.99671 * 9 7 5 11 11 H 1.48507 * 109.46888 * 209.99484 * 9 7 5 12 12 H 1.48494 * 109.47205 * 329.99154 * 9 7 5 13 13 N 1.46502 * 109.47288 * 295.04989 * 3 2 1 14 14 C 1.34772 * 120.00259 * 102.27406 * 13 3 2 15 15 O 1.21274 * 119.99971 * 4.23546 * 14 13 3 16 16 C 1.50699 * 119.99837 * 184.23648 * 14 13 3 17 17 H 1.08998 * 109.46582 * 326.87852 * 16 14 13 18 18 N 1.46852 * 109.46243 * 206.90575 * 16 14 13 19 19 C 1.46843 * 111.19763 * 178.24204 * 18 16 14 20 20 C 1.53038 * 109.52491 * 61.74387 * 19 18 16 21 21 C 1.53116 * 109.27593 * 300.81778 * 20 19 18 22 22 C 1.53042 * 109.46404 * 86.78709 * 16 14 13 23 23 C 1.53001 * 109.45364 * 59.22377 * 22 16 14 24 24 C 1.52995 * 109.55689 * 299.09986 * 22 16 14 25 25 H 1.09005 * 109.47099 * 301.29006 * 1 2 3 26 26 H 1.08996 * 109.47400 * 61.29085 * 1 2 3 27 27 H 1.09000 * 109.47052 * 181.29414 * 1 2 3 28 28 H 1.08997 * 109.47189 * 239.99887 * 2 1 3 29 29 H 1.09010 * 109.46895 * 119.99977 * 2 1 3 30 30 H 0.97002 * 120.00123 * 180.02562 * 8 7 5 31 31 H 0.97008 * 119.99415 * 282.27727 * 13 3 2 32 32 H 1.00899 * 111.00285 * 54.13900 * 18 16 14 33 33 H 1.08999 * 109.46176 * 301.72164 * 19 18 16 34 34 H 1.09002 * 109.45301 * 181.74773 * 19 18 16 35 35 H 1.09000 * 109.50242 * 180.88009 * 20 19 18 36 36 H 1.09000 * 109.50620 * 60.75822 * 20 19 18 37 37 H 1.08996 * 109.52893 * 177.56056 * 21 20 19 38 38 H 1.09008 * 109.52545 * 297.68699 * 21 20 19 39 39 H 1.09004 * 109.47223 * 173.68083 * 23 22 16 40 40 H 1.09005 * 109.46907 * 293.68168 * 23 22 16 41 41 H 1.09002 * 109.47299 * 53.68131 * 23 22 16 42 42 H 1.08995 * 109.47448 * 300.16822 * 24 22 16 43 43 H 1.09003 * 109.46811 * 60.16651 * 24 22 16 44 44 H 1.09003 * 109.47225 * 180.16710 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6061 1.9813 0.8423 5 6 3.5420 1.4442 0.1226 6 1 4.1467 1.8890 -0.6538 7 6 4.1442 0.8781 1.2262 8 7 5.4550 0.8792 1.3330 9 14 3.0983 0.1082 2.5689 10 1 2.8773 -1.3278 2.2620 11 1 3.7967 0.2338 3.8735 12 1 1.7898 0.8067 2.6388 13 7 1.6515 2.0978 -1.2513 14 6 0.6096 2.9526 -1.2691 15 8 0.0422 3.2385 -0.2361 16 6 0.1499 3.5531 -2.5726 17 1 1.0080 3.6964 -3.2292 18 7 -0.4909 4.8491 -2.3152 19 6 -0.9173 5.4884 -3.5665 20 6 -1.9519 4.6040 -4.2661 21 6 -1.3323 3.2342 -4.5564 22 6 -0.8516 2.6100 -3.2433 23 6 -2.0472 2.3917 -2.3139 24 6 -0.1766 1.2679 -3.5327 25 1 -0.3633 0.5338 0.8782 26 1 -0.3634 0.4936 -0.9013 27 1 -0.3633 -1.0274 0.0232 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 5.8787 0.4806 2.1092 31 1 2.1441 1.9164 -2.0671 32 1 0.1193 5.4560 -1.7886 33 1 -0.0540 5.6226 -4.2183 34 1 -1.3600 6.4596 -3.3455 35 1 -2.2565 5.0713 -5.2025 36 1 -2.8214 4.4806 -3.6205 37 1 -2.0790 2.5864 -5.0156 38 1 -0.4869 3.3529 -5.2342 39 1 -2.8105 1.8126 -2.8336 40 1 -1.7224 1.8501 -1.4254 41 1 -2.4603 3.3567 -2.0204 42 1 0.6759 1.4249 -4.1935 43 1 0.1653 0.8241 -2.5977 44 1 -0.8902 0.5984 -4.0131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233867913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:39 Heat of formation + Delta-G solvation = -47.459653 kcal Electronic energy + Delta-G solvation = -22613.976481 eV Core-core repulsion = 19565.621980 eV Total energy + Delta-G solvation = -3048.354501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34719 -37.93395 -35.37714 -33.94578 -32.37908 -31.86228 -31.20515 -27.64216 -27.02627 -26.73828 -24.45183 -22.67535 -21.66570 -20.77403 -19.67569 -18.46548 -17.21095 -16.29814 -15.95854 -15.42418 -15.31009 -14.80008 -14.23659 -13.90008 -13.59518 -13.41824 -13.31241 -13.18532 -12.80682 -12.52924 -12.24137 -11.99340 -11.85542 -11.80833 -11.72399 -11.36797 -11.15197 -10.98848 -10.80846 -10.64604 -10.59519 -10.41265 -10.24656 -9.90640 -9.53182 -9.31091 -8.87378 -8.68450 -8.33379 -7.98140 -6.17876 -4.19306 3.23516 3.30522 3.36780 3.41495 3.78155 4.33568 4.35024 4.65833 4.82867 4.86624 5.05696 5.15410 5.19658 5.36321 5.42964 5.49865 5.61292 5.63692 5.70890 5.77197 5.83877 5.88195 5.94016 5.96460 6.03008 6.08398 6.18033 6.22718 6.24122 6.38591 6.60183 6.64597 6.72008 6.83168 6.90626 6.99205 7.25642 7.37541 7.39353 7.59383 8.24060 8.56779 8.81646 9.04603 9.43771 10.94542 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030915 B = 0.005725 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.486240 B = 4889.834003 C = 5138.329211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.238 3.762 4 H 0.059 0.941 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.703 5.703 14 C 0.511 3.489 15 O -0.533 6.533 16 C 0.081 3.919 17 H 0.050 0.950 18 N -0.665 5.665 19 C 0.060 3.940 20 C -0.120 4.120 21 C -0.108 4.108 22 C -0.047 4.047 23 C -0.136 4.136 24 C -0.160 4.160 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.266 0.734 31 H 0.391 0.609 32 H 0.349 0.651 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.984 3.679 -12.304 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C 0.134 3.866 4 H 0.076 0.924 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.126 4.126 8 N -0.532 5.532 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.352 5.352 14 C 0.295 3.705 15 O -0.409 6.409 16 C -0.033 4.033 17 H 0.068 0.932 18 N -0.298 5.298 19 C -0.069 4.069 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.048 4.048 23 C -0.193 4.193 24 C -0.218 4.218 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.224 0.776 32 H 0.168 0.832 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.842 3.555 -11.293 18.215 hybrid contribution 0.876 -0.331 -0.065 0.939 sum -12.966 3.224 -11.357 17.536 Atomic orbital electron populations 1.21934 0.97490 0.99791 1.01866 1.22275 0.93967 1.00238 1.01270 1.19175 0.95555 0.88294 0.83587 0.92363 1.21134 0.88939 1.39303 1.07657 0.90409 1.24854 0.94825 0.95272 0.97659 1.69872 1.08683 1.44748 1.29851 0.86919 0.81060 0.79803 0.81037 1.20322 1.22213 1.18466 1.46161 1.31008 1.44673 1.13330 1.20159 0.80573 0.79785 0.89998 1.90654 1.55943 1.60489 1.33838 1.21506 0.95559 0.91392 0.94796 0.93232 1.59927 1.46328 1.03904 1.19608 1.21927 0.97384 0.97322 0.90316 1.21639 0.98991 0.95332 0.99799 1.21658 1.00286 0.96447 0.96214 1.20421 0.95432 0.93979 0.94976 1.21855 0.96144 1.02662 0.98681 1.22161 1.00413 0.96190 1.03019 0.93083 0.92685 0.94282 0.92193 0.92646 0.92388 0.77608 0.83212 0.95458 0.90677 0.91880 0.90743 0.91623 0.92275 0.93786 0.92149 0.90832 0.92595 0.90646 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.59 37.16 0.36 -2.53 16 2 C -0.14 -2.96 5.11 -26.74 -0.14 -3.10 16 3 C 0.24 5.54 1.85 -69.09 -0.13 5.41 16 4 H 0.06 1.53 6.12 -51.93 -0.32 1.22 16 5 C -0.53 -14.41 9.38 -34.44 -0.32 -14.73 16 6 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 9 Si 0.88 21.81 24.41 -169.99 -4.15 17.66 16 10 H -0.28 -6.57 6.83 56.52 0.39 -6.19 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16 13 N -0.70 -13.59 3.37 -54.94 -0.18 -13.78 16 14 C 0.51 9.47 4.23 -10.99 -0.05 9.42 16 15 O -0.53 -11.82 15.46 5.56 0.09 -11.74 16 16 C 0.08 1.16 2.04 -68.87 -0.14 1.02 16 17 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 18 N -0.67 -9.05 5.32 -107.98 -0.57 -9.62 16 19 C 0.06 0.63 6.55 -3.84 -0.03 0.60 16 20 C -0.12 -1.16 5.74 -26.65 -0.15 -1.32 16 21 C -0.11 -1.11 4.79 -26.61 -0.13 -1.23 16 22 C -0.05 -0.59 0.54 -154.43 -0.08 -0.68 16 23 C -0.14 -1.88 7.43 37.16 0.28 -1.61 16 24 C -0.16 -1.95 7.92 37.16 0.29 -1.66 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.97 3.31 -51.93 -0.17 0.80 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.27 3.21 -51.92 -0.17 1.10 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.39 6.77 8.53 -40.82 -0.35 6.42 16 32 H 0.35 4.84 8.78 -39.29 -0.35 4.49 16 33 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.78 6.73 -51.93 -0.35 0.43 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.99 5.59 -51.93 -0.29 0.69 16 41 H 0.07 1.08 6.17 -51.93 -0.32 0.76 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.07 4.21 -51.93 -0.22 0.85 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -30.59 320.34 -6.76 -37.35 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -7.21 Total: 9.52 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -0.33 Total: -8.32 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.01 Total: -49.30 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.15 Total: 17.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.59 -6.76 -37.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233867913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.105 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds