Wall clock time and date at job start Mon Mar 30 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47482 * 2 1 4 4 H 1.09000 * 109.47313 * 54.99986 * 3 2 1 5 5 C 1.50700 * 109.47135 * 175.00321 * 3 2 1 6 6 H 1.08003 * 120.00021 * 120.00168 * 5 3 2 7 7 C 1.37876 * 119.99958 * 299.99802 * 5 3 2 8 8 N 1.31513 * 119.99771 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99933 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47202 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47461 * 120.00275 * 9 7 5 12 12 H 1.48506 * 109.46671 * 239.99732 * 9 7 5 13 13 N 1.46507 * 109.46829 * 295.00031 * 3 2 1 14 14 C 1.34776 * 119.99986 * 85.00398 * 13 3 2 15 15 O 1.21282 * 119.99871 * 355.46701 * 14 13 3 16 16 C 1.50693 * 120.00083 * 175.19611 * 14 13 3 17 17 C 1.53001 * 110.62910 * 59.25965 * 16 14 13 18 18 C 1.53001 * 109.47260 * 65.14570 * 17 16 14 19 19 C 1.53006 * 109.47182 * 185.14452 * 17 16 14 20 20 C 1.55139 * 110.70786 * 296.15678 * 16 14 13 21 21 C 1.55383 * 101.43939 * 277.17893 * 20 16 14 22 22 N 1.47844 * 104.83582 * 322.94987 * 21 20 16 23 23 C 1.47448 * 108.56597 * 24.10359 * 22 21 20 24 24 H 1.08999 * 109.47102 * 59.99810 * 1 2 3 25 25 H 1.08998 * 109.47533 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46532 * 300.00449 * 1 2 3 27 27 H 1.09002 * 109.46991 * 239.99641 * 2 1 3 28 28 H 1.08999 * 109.47102 * 120.00190 * 2 1 3 29 29 H 0.97002 * 119.99556 * 179.97438 * 8 7 5 30 30 H 0.96999 * 119.99938 * 264.99952 * 13 3 2 31 31 H 1.09003 * 109.47440 * 305.14467 * 17 16 14 32 32 H 1.09003 * 109.46979 * 59.99614 * 18 17 16 33 33 H 1.08991 * 109.47314 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.46803 * 300.00445 * 18 17 16 35 35 H 1.09005 * 109.46678 * 66.41049 * 19 17 16 36 36 H 1.08999 * 109.46987 * 186.41018 * 19 17 16 37 37 H 1.08997 * 109.47258 * 306.41493 * 19 17 16 38 38 H 1.09007 * 110.99086 * 35.35889 * 20 16 14 39 39 H 1.08999 * 110.99854 * 159.17736 * 20 16 14 40 40 H 1.09003 * 110.34760 * 204.11431 * 21 20 16 41 41 H 1.08993 * 110.44810 * 81.84827 * 21 20 16 42 42 H 1.00894 * 111.00183 * 261.83755 * 22 21 20 43 43 H 1.08997 * 109.88691 * 239.59964 * 23 22 21 44 44 H 1.09002 * 110.02084 * 118.48735 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1434 0.8782 1.2279 8 7 3.4063 0.3365 2.1727 9 14 6.0050 0.8810 1.3816 10 1 6.5988 1.5459 0.1940 11 1 6.3993 1.6163 2.6100 12 1 6.4970 -0.5179 1.4628 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6644 -1.3670 15 8 -0.3694 2.5615 -0.4653 16 6 0.0761 3.4314 -2.6134 17 6 0.1775 2.5326 -3.8474 18 6 -0.8729 1.4236 -3.7584 19 6 -0.0665 3.3662 -5.1071 20 6 0.9825 4.6808 -2.7690 21 6 0.2595 5.7026 -1.8484 22 7 -1.1811 5.4292 -2.0375 23 6 -1.3386 4.0359 -2.4935 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8294 -0.0620 2.9493 30 1 2.2720 2.1230 -1.9979 31 1 1.1719 2.0883 -3.8927 32 1 -1.8672 1.8679 -3.7131 33 1 -0.8010 0.7836 -4.6377 34 1 -0.6991 0.8298 -2.8610 35 1 0.7456 4.0826 -5.2315 36 1 -0.1074 2.7088 -5.9755 37 1 -1.0114 3.9011 -5.0114 38 1 1.9927 4.4770 -2.4138 39 1 0.9962 5.0272 -3.8024 40 1 0.4956 6.7218 -2.1545 41 1 0.5425 5.5444 -0.8078 42 1 -1.5879 6.0741 -2.6983 43 1 -1.8334 4.0173 -3.4645 44 1 -1.9235 3.4699 -1.7685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233868238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:41 Heat of formation + Delta-G solvation = -50.056023 kcal Electronic energy + Delta-G solvation = -22585.495447 eV Core-core repulsion = 19537.028358 eV Total energy + Delta-G solvation = -3048.467088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.42768 -37.53711 -34.94101 -34.72517 -32.32060 -31.01773 -29.47142 -28.28845 -27.27364 -26.71620 -23.40740 -22.59929 -21.56384 -20.79398 -19.47310 -18.44384 -17.11607 -16.68551 -15.75075 -15.38100 -14.81823 -14.59908 -14.08851 -13.89479 -13.71030 -13.30090 -13.00783 -12.64876 -12.53724 -12.27077 -12.09194 -11.75116 -11.69986 -11.47679 -11.39392 -11.22510 -11.17312 -10.94533 -10.83297 -10.81676 -10.37515 -10.31530 -10.27203 -10.10254 -9.54863 -9.00968 -8.77983 -8.47681 -8.26447 -7.73461 -6.11090 -4.20355 3.23327 3.31316 3.33549 3.46374 4.10275 4.30328 4.37945 4.62748 4.81036 4.93587 5.08579 5.13332 5.20384 5.32104 5.42539 5.48250 5.62530 5.69213 5.71051 5.80417 5.86521 5.97415 6.04043 6.13281 6.24119 6.31593 6.33988 6.42515 6.44087 6.56895 6.73520 6.96690 7.10653 7.25650 7.43065 7.51361 7.53445 7.65064 7.78195 7.94019 8.21732 8.74124 8.81592 9.22713 9.47903 10.94177 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.005957 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.268551 B = 4698.996282 C = 4968.312346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.046 0.954 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.519 3.481 15 O -0.537 6.537 16 C -0.095 4.095 17 C -0.078 4.078 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.147 4.147 21 C 0.049 3.951 22 N -0.678 5.678 23 C 0.065 3.935 24 H 0.044 0.956 25 H 0.019 0.981 26 H 0.049 0.951 27 H 0.029 0.971 28 H 0.097 0.903 29 H 0.263 0.737 30 H 0.385 0.615 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.330 0.670 43 H 0.055 0.945 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 6.228 -13.679 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.064 0.936 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.303 3.697 15 O -0.415 6.415 16 C -0.100 4.100 17 C -0.098 4.098 18 C -0.209 4.209 19 C -0.207 4.207 20 C -0.186 4.186 21 C -0.080 4.080 22 N -0.306 5.306 23 C -0.064 4.064 24 H 0.063 0.937 25 H 0.038 0.962 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.217 0.783 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.145 0.855 43 H 0.073 0.927 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.215 5.927 -12.103 14.840 hybrid contribution 1.742 -0.044 -1.147 2.086 sum -4.473 5.883 -13.249 15.171 Atomic orbital electron populations 1.21900 0.98262 0.97767 1.01566 1.21920 0.92697 0.99876 1.02054 1.18741 0.93993 0.89176 0.81003 0.93576 1.21276 0.90843 1.38825 1.06170 0.92183 1.24882 0.98481 0.94872 0.95436 1.69910 1.34962 1.37678 1.09357 0.86435 0.85058 0.77763 0.78086 1.19799 1.20893 1.20895 1.46448 1.14716 1.56240 1.18183 1.19823 0.82771 0.79480 0.87618 1.90663 1.49279 1.60520 1.41068 1.22065 0.97334 0.95834 0.94751 1.21000 1.00425 0.95414 0.92916 1.21916 0.98633 0.98070 1.02234 1.21995 1.01707 0.99955 0.97008 1.23419 0.99802 0.94711 1.00707 1.22949 0.87036 0.97562 1.00475 1.61676 1.14607 1.03716 1.50572 1.22691 0.95144 0.89027 0.99518 0.93741 0.96196 0.93219 0.95236 0.88487 0.92655 0.78319 0.90570 0.92474 0.92671 0.91832 0.92351 0.92474 0.92471 0.89993 0.90297 0.91707 0.90226 0.85507 0.92660 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.47 37.16 0.31 -2.80 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.82 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.35 7.65 -51.93 -0.40 0.96 16 5 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.79 11.29 55.43 0.63 -24.16 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.71 -14.43 4.74 -54.93 -0.26 -14.69 16 14 C 0.52 10.02 4.17 -10.99 -0.05 9.98 16 15 O -0.54 -12.43 12.23 5.56 0.07 -12.36 16 16 C -0.10 -1.37 0.31 -153.84 -0.05 -1.42 16 17 C -0.08 -0.95 2.33 -90.62 -0.21 -1.16 16 18 C -0.15 -1.91 8.76 37.16 0.33 -1.59 16 19 C -0.15 -1.41 8.42 37.16 0.31 -1.10 16 20 C -0.15 -1.88 5.88 -24.33 -0.14 -2.02 16 21 C 0.05 0.66 7.40 -2.04 -0.02 0.65 16 22 N -0.68 -9.22 7.39 -110.51 -0.82 -10.04 16 23 C 0.07 0.92 5.34 -2.83 -0.02 0.91 16 24 H 0.04 0.96 4.15 -51.93 -0.22 0.75 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 1.21 7.80 -51.93 -0.41 0.80 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.38 7.01 7.80 -40.82 -0.32 6.69 16 31 H 0.08 0.95 7.39 -51.93 -0.38 0.57 16 32 H 0.06 0.68 6.93 -51.93 -0.36 0.32 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.98 6.06 -51.93 -0.31 0.67 16 35 H 0.06 0.51 6.33 -51.93 -0.33 0.18 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.52 6.08 -51.93 -0.32 0.20 16 38 H 0.08 1.12 7.87 -51.92 -0.41 0.71 16 39 H 0.08 0.82 5.66 -51.93 -0.29 0.53 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.33 3.54 8.91 -39.29 -0.35 3.19 16 43 H 0.06 0.64 5.42 -51.93 -0.28 0.36 16 44 H 0.09 1.61 6.85 -51.93 -0.36 1.25 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -29.60 325.02 -7.84 -37.44 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.11 Total: 11.07 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -0.22 Total: -7.75 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.45 Total: -48.89 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.60 -7.84 -37.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233868238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.615 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds