Wall clock time and date at job start Mon Mar 30 2020 05:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 H 1.08999 * 109.46965 * 304.99930 * 3 2 1 5 5 C 1.50696 * 109.46890 * 185.00337 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99837 * 5 3 2 7 7 C 1.37881 * 120.00447 * 59.99907 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47150 * 60.00100 * 9 7 5 11 11 H 1.48498 * 109.47193 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47405 * 300.00440 * 9 7 5 13 13 N 1.46499 * 109.47136 * 65.00280 * 3 2 1 14 14 C 1.34777 * 119.99665 * 275.27771 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 H 1.08998 * 109.46570 * 319.97187 * 16 14 13 18 18 N 1.46851 * 109.46036 * 199.99737 * 16 14 13 19 19 C 1.46841 * 111.20020 * 178.23949 * 18 16 14 20 20 C 1.53041 * 109.52450 * 61.74232 * 19 18 16 21 21 C 1.53122 * 109.27540 * 300.82120 * 20 19 18 22 22 C 1.53036 * 109.46532 * 79.94601 * 16 14 13 23 23 C 1.52997 * 109.49932 * 299.13237 * 22 16 14 24 24 C 1.52994 * 109.50495 * 59.25150 * 22 16 14 25 25 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46725 * 300.00105 * 1 2 3 27 27 H 1.08998 * 109.46763 * 59.99672 * 1 2 3 28 28 H 1.09001 * 109.46725 * 239.99895 * 2 1 3 29 29 H 1.08999 * 109.47141 * 120.00715 * 2 1 3 30 30 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99790 * 94.99484 * 13 3 2 32 32 H 1.00900 * 111.00129 * 302.33617 * 18 16 14 33 33 H 1.08998 * 109.46417 * 181.75628 * 19 18 16 34 34 H 1.08997 * 109.46372 * 301.73847 * 19 18 16 35 35 H 1.09001 * 109.50253 * 60.75792 * 20 19 18 36 36 H 1.08993 * 109.50973 * 180.88139 * 20 19 18 37 37 H 1.09005 * 109.52300 * 177.55247 * 21 20 19 38 38 H 1.09000 * 109.52607 * 297.68325 * 21 20 19 39 39 H 1.09000 * 109.47555 * 60.00346 * 23 22 16 40 40 H 1.09000 * 109.47279 * 180.02562 * 23 22 16 41 41 H 1.09006 * 109.47536 * 299.99853 * 23 22 16 42 42 H 1.09004 * 109.47135 * 59.99979 * 24 22 16 43 43 H 1.08997 * 109.47358 * 180.02562 * 24 22 16 44 44 H 1.09006 * 109.47126 * 300.00206 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8886 0.6522 7 6 4.1433 0.8781 -1.2281 8 7 3.4062 0.3364 -2.1729 9 14 6.0049 0.8809 -1.3819 10 1 6.5975 0.1468 -0.2350 11 1 6.3977 0.2174 -2.6511 12 1 6.4996 2.2810 -1.3822 13 7 1.6527 2.0974 1.2518 14 6 0.4333 2.6595 1.3689 15 8 -0.3413 2.6275 0.4362 16 6 0.0325 3.3279 2.6587 17 1 0.3941 2.7381 3.5010 18 7 -1.4312 3.4275 2.7238 19 6 -1.8663 4.0369 3.9870 20 6 -1.3118 5.4599 4.0861 21 6 0.2173 5.4122 4.0208 22 6 0.6436 4.7296 2.7181 23 6 2.1693 4.6239 2.6724 24 6 0.1518 5.5523 1.5256 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0614 -2.9499 31 1 2.2722 2.1230 1.9978 32 1 -1.7945 3.9373 1.9325 33 1 -2.9554 4.0685 4.0188 34 1 -1.4956 3.4438 4.8230 35 1 -1.6929 6.0574 3.2580 36 1 -1.6218 5.9063 5.0308 37 1 0.6149 6.4268 4.0473 38 1 0.6009 4.8483 4.8711 39 1 2.4721 4.1348 1.7465 40 1 2.6041 5.6225 2.7152 41 1 2.5187 4.0391 3.5233 42 1 -0.9350 5.6283 1.5602 43 1 0.5877 6.5504 1.5682 44 1 0.4525 5.0641 0.5986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234035039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:44 Heat of formation + Delta-G solvation = -55.432087 kcal Electronic energy + Delta-G solvation = -22482.860697 eV Core-core repulsion = 19434.160485 eV Total energy + Delta-G solvation = -3048.700212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.44646 -37.93622 -34.96720 -33.81814 -32.28528 -31.63438 -30.58742 -27.48516 -26.99043 -26.48297 -24.29678 -22.80101 -21.75869 -20.33979 -19.27028 -18.75839 -17.23416 -15.86054 -15.62841 -15.41542 -14.88526 -14.74726 -14.37382 -13.95049 -13.68943 -13.46340 -12.98048 -12.64279 -12.44435 -12.19672 -11.98547 -11.73466 -11.58381 -11.55578 -11.41300 -11.33555 -11.20405 -10.98418 -10.90667 -10.74036 -10.47734 -10.32332 -10.27247 -10.09609 -9.55119 -9.01014 -8.85649 -8.45718 -8.13924 -7.70876 -6.09391 -4.18771 3.26288 3.31991 3.32704 3.46761 3.96684 4.36046 4.58576 4.67807 4.72150 4.94136 5.00942 5.20259 5.21736 5.34367 5.43192 5.55642 5.64857 5.69163 5.75786 5.82884 5.88101 5.91015 5.99424 6.06497 6.13723 6.21781 6.45211 6.47721 6.49670 6.56019 6.75377 7.04776 7.14012 7.28658 7.44601 7.51323 7.55705 7.66483 7.79858 7.95242 8.23324 8.74354 8.82737 9.23140 9.49132 10.95727 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.005720 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.363869 B = 4893.781412 C = 5575.141498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.709 5.709 14 C 0.514 3.486 15 O -0.540 6.540 16 C 0.078 3.922 17 H 0.092 0.908 18 N -0.666 5.666 19 C 0.058 3.942 20 C -0.161 4.161 21 C -0.105 4.105 22 C -0.088 4.088 23 C -0.156 4.156 24 C -0.145 4.145 25 H 0.020 0.980 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.352 0.648 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 8.703 12.231 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.358 5.358 14 C 0.298 3.702 15 O -0.418 6.418 16 C -0.036 4.036 17 H 0.110 0.890 18 N -0.297 5.297 19 C -0.071 4.071 20 C -0.201 4.201 21 C -0.143 4.143 22 C -0.091 4.091 23 C -0.214 4.214 24 C -0.202 4.202 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.173 0.827 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.226 7.895 11.549 15.313 hybrid contribution 1.611 0.918 0.195 1.865 sum -4.615 8.814 11.745 15.392 Atomic orbital electron populations 1.21839 0.98192 0.97952 1.01462 1.21932 0.92740 0.99873 1.02090 1.18735 0.93980 0.89145 0.81107 0.93443 1.21194 0.90801 1.39000 1.06166 0.92250 1.24871 0.98415 0.94864 0.95450 1.69887 1.35133 1.37564 1.09331 0.86553 0.85106 0.78252 0.77429 1.20204 1.21178 1.20257 1.46604 1.14491 1.56216 1.18449 1.20015 0.82568 0.78992 0.88577 1.90648 1.51247 1.59564 1.40368 1.21623 0.89127 0.94978 0.97870 0.89005 1.60395 1.07930 1.56627 1.04740 1.22036 0.99886 0.92341 0.92885 1.22341 0.96440 0.99180 1.02110 1.21618 0.95395 1.00536 0.96752 1.21096 0.96710 0.95436 0.95819 1.22085 0.93553 1.02197 1.03521 1.21924 1.00661 0.99496 0.98106 0.96084 0.93814 0.93291 0.88466 0.95191 0.92567 0.78047 0.82725 0.90701 0.91098 0.91677 0.91723 0.91881 0.91848 0.90189 0.92622 0.92573 0.92774 0.92727 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.75 2.24 -69.09 -0.15 6.60 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.00 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 13 N -0.71 -14.33 3.74 -54.94 -0.21 -14.53 16 14 C 0.51 9.90 3.96 -10.99 -0.04 9.85 16 15 O -0.54 -12.24 13.02 5.55 0.07 -12.16 16 16 C 0.08 1.16 2.12 -68.87 -0.15 1.01 16 17 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 18 N -0.67 -9.48 6.21 -107.99 -0.67 -10.15 16 19 C 0.06 0.63 6.55 -3.83 -0.03 0.60 16 20 C -0.16 -1.55 5.73 -26.65 -0.15 -1.70 16 21 C -0.11 -1.09 4.79 -26.60 -0.13 -1.22 16 22 C -0.09 -1.13 0.54 -154.43 -0.08 -1.21 16 23 C -0.16 -2.03 7.54 37.16 0.28 -1.75 16 24 C -0.14 -1.97 7.60 37.15 0.28 -1.69 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.99 5.63 -51.93 -0.29 0.70 16 27 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 6.96 7.38 -40.82 -0.30 6.66 16 32 H 0.35 5.28 6.60 -39.29 -0.26 5.02 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.65 6.58 -51.93 -0.34 0.30 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 1.27 5.93 -51.93 -0.31 0.96 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.70 5.12 -51.93 -0.27 0.43 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.13 6.99 -51.93 -0.36 0.77 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -28.53 325.40 -8.12 -36.65 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -7.43 Total: 11.89 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -0.40 Total: -8.06 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.25 Total: -48.69 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.53 -8.12 -36.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234035039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.783 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds