Wall clock time and date at job start Mon Mar 30 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46915 * 2 1 4 4 H 1.08998 * 109.47276 * 304.92460 * 3 2 1 5 5 C 1.50702 * 109.46602 * 184.93053 * 3 2 1 6 6 H 1.08005 * 119.99757 * 244.91615 * 5 3 2 7 7 C 1.37872 * 120.00183 * 64.92364 * 5 3 2 8 8 N 1.31516 * 119.99730 * 191.72970 * 7 5 3 9 9 Si 1.86796 * 120.00198 * 11.73058 * 7 5 3 10 10 H 1.48500 * 109.47183 * 91.09642 * 9 7 5 11 11 H 1.48502 * 109.46917 * 211.09654 * 9 7 5 12 12 H 1.48503 * 109.46966 * 331.09450 * 9 7 5 13 13 N 1.46496 * 109.47229 * 64.93217 * 3 2 1 14 14 C 1.34779 * 119.99362 * 262.61338 * 13 3 2 15 15 O 1.21275 * 120.00818 * 4.64626 * 14 13 3 16 16 C 1.50707 * 119.99640 * 184.64765 * 14 13 3 17 17 H 1.09000 * 109.46291 * 31.90430 * 16 14 13 18 18 N 1.46845 * 109.46460 * 151.88610 * 16 14 13 19 19 C 1.46846 * 111.19880 * 181.75659 * 18 16 14 20 20 C 1.53030 * 109.52378 * 298.25602 * 19 18 16 21 21 C 1.53122 * 109.27853 * 59.17812 * 20 19 18 22 22 C 1.53045 * 109.45980 * 271.92625 * 16 14 13 23 23 C 1.52996 * 109.50233 * 300.74543 * 22 16 14 24 24 C 1.52997 * 109.50179 * 60.86623 * 22 16 14 25 25 H 1.09004 * 109.46616 * 180.49164 * 1 2 3 26 26 H 1.08993 * 109.46784 * 300.49435 * 1 2 3 27 27 H 1.09000 * 109.46834 * 60.50054 * 1 2 3 28 28 H 1.09000 * 109.46831 * 240.00010 * 2 1 3 29 29 H 1.08995 * 109.46848 * 120.00136 * 2 1 3 30 30 H 0.97007 * 119.99844 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00439 * 82.61008 * 13 3 2 32 32 H 1.00905 * 110.99673 * 305.85795 * 18 16 14 33 33 H 1.08998 * 109.46110 * 58.27085 * 19 18 16 34 34 H 1.09003 * 109.45921 * 178.24906 * 19 18 16 35 35 H 1.08998 * 109.50463 * 179.12314 * 20 19 18 36 36 H 1.08997 * 109.50552 * 299.23837 * 20 19 18 37 37 H 1.09007 * 109.52152 * 62.25308 * 21 20 19 38 38 H 1.09000 * 109.52306 * 182.37662 * 21 20 19 39 39 H 1.08996 * 109.47147 * 66.51538 * 23 22 16 40 40 H 1.09005 * 109.46855 * 186.51128 * 23 22 16 41 41 H 1.08997 * 109.47364 * 306.51259 * 23 22 16 42 42 H 1.08998 * 109.47784 * 59.99768 * 24 22 16 43 43 H 1.09004 * 109.46799 * 179.97438 * 24 22 16 44 44 H 1.09003 * 109.46970 * 299.99307 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9812 -0.8426 5 6 3.5421 1.4442 -0.1221 6 1 4.1494 1.8169 0.6895 7 6 4.1409 0.9701 -1.2699 8 7 5.4381 0.7544 -1.2938 9 14 3.1100 0.6342 -2.7910 10 1 3.0694 1.8517 -3.6403 11 1 3.7115 -0.4854 -3.5592 12 1 1.7297 0.2691 -2.3827 13 7 1.6510 2.0980 1.2511 14 6 0.5507 2.8753 1.2907 15 8 -0.1640 2.9650 0.3150 16 6 0.2083 3.6330 2.5476 17 1 1.1262 3.9107 3.0657 18 7 -0.5427 4.8457 2.1987 19 6 -0.8607 5.6359 3.3948 20 6 -1.7451 4.8111 4.3325 21 6 -1.0064 3.5290 4.7265 22 6 -0.6445 2.7484 3.4599 23 6 -1.9244 2.3423 2.7266 24 6 0.1463 1.4953 3.8410 25 1 -0.3633 -1.0277 0.0088 26 1 -0.3633 0.5215 0.8855 27 1 -0.3633 0.5060 -0.8945 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.8594 0.4205 -2.1013 31 1 2.1853 1.9726 2.0509 32 1 -0.0399 5.4002 1.5220 33 1 0.0624 5.9042 3.9088 34 1 -1.3895 6.5426 3.1010 35 1 -1.9681 5.3922 5.2273 36 1 -2.6743 4.5541 3.8240 37 1 -0.0965 3.7850 5.2693 38 1 -1.6493 2.9184 5.3605 39 1 -1.6724 1.6928 1.8884 40 1 -2.5833 1.8104 3.4131 41 1 -2.4295 3.2343 2.3561 42 1 1.0570 1.7856 4.3648 43 1 -0.4614 0.8659 4.4911 44 1 0.4068 0.9418 2.9388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234035646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:47 Heat of formation + Delta-G solvation = -50.019006 kcal Electronic energy + Delta-G solvation = -22562.992100 eV Core-core repulsion = 19514.526617 eV Total energy + Delta-G solvation = -3048.465483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33338 -37.94469 -35.25224 -33.94610 -32.37404 -31.88279 -31.09623 -27.60878 -27.03702 -26.70457 -24.44480 -22.63271 -21.67557 -20.65754 -19.60477 -18.45147 -17.23280 -16.29401 -15.89150 -15.41114 -15.30987 -14.74354 -14.17086 -13.84710 -13.53956 -13.41240 -13.33173 -13.21953 -12.77601 -12.35144 -12.24435 -11.95600 -11.82921 -11.74523 -11.70867 -11.37633 -11.05107 -10.91757 -10.81724 -10.65069 -10.59153 -10.44142 -10.25105 -9.93657 -9.43234 -9.35794 -8.86539 -8.54814 -8.32839 -7.98370 -6.19960 -4.18979 3.27013 3.31168 3.36689 3.43284 3.80731 4.35011 4.36906 4.66599 4.83676 4.87318 5.06422 5.13727 5.20778 5.37111 5.44367 5.50697 5.62320 5.64474 5.71369 5.79357 5.84957 5.96117 6.01613 6.03736 6.05788 6.17348 6.22052 6.24000 6.24728 6.43107 6.63694 6.73946 6.79847 6.95533 6.97819 7.04646 7.33272 7.38943 7.40591 7.59823 8.22553 8.59011 8.80946 9.05400 9.44033 10.92270 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029791 B = 0.005643 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.644171 B = 4960.975558 C = 5100.386012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.244 3.756 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.076 0.924 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.860 3.140 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.243 1.243 13 N -0.704 5.704 14 C 0.510 3.490 15 O -0.533 6.533 16 C 0.080 3.920 17 H 0.051 0.949 18 N -0.665 5.665 19 C 0.060 3.940 20 C -0.120 4.120 21 C -0.108 4.108 22 C -0.048 4.048 23 C -0.135 4.135 24 C -0.156 4.156 25 H 0.033 0.967 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.266 0.734 31 H 0.391 0.609 32 H 0.348 0.652 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.123 4.905 12.005 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.140 3.860 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.094 0.906 7 C -0.122 4.122 8 N -0.527 5.527 9 Si 0.686 3.314 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.167 1.167 13 N -0.353 5.353 14 C 0.294 3.706 15 O -0.409 6.409 16 C -0.033 4.033 17 H 0.068 0.932 18 N -0.297 5.297 19 C -0.070 4.070 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.049 4.049 23 C -0.192 4.192 24 C -0.214 4.214 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.224 0.776 32 H 0.167 0.833 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.058 4.593 11.143 17.770 hybrid contribution 0.971 0.133 -0.242 1.010 sum -12.087 4.726 10.901 16.948 Atomic orbital electron populations 1.21835 0.97617 0.99137 1.01669 1.22331 0.93706 0.99842 1.01526 1.19034 0.95266 0.88694 0.83000 0.93320 1.21071 0.88869 1.43669 1.03826 0.90561 1.24803 0.94791 0.94071 0.98564 1.69929 1.10039 1.44180 1.28554 0.87299 0.82378 0.78345 0.83365 1.20408 1.21234 1.16734 1.46227 1.26035 1.48547 1.14447 1.20156 0.81341 0.80250 0.88845 1.90653 1.49501 1.64198 1.36549 1.21520 0.95236 0.91999 0.94540 0.93169 1.59936 1.50019 1.07178 1.12602 1.21925 0.98137 0.95903 0.90986 1.21638 0.99558 0.96133 0.98424 1.21658 1.00144 0.96391 0.96421 1.20432 0.96074 0.94276 0.94110 1.21832 0.95710 1.02143 0.99497 1.22083 0.99757 0.97094 1.02481 0.94817 0.93241 0.93215 0.91750 0.92839 0.92434 0.77564 0.83258 0.95449 0.90689 0.91890 0.90751 0.92265 0.91623 0.92213 0.93831 0.90840 0.92552 0.92241 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.92 37.16 0.33 -2.51 16 2 C -0.14 -2.92 4.85 -26.73 -0.13 -3.05 16 3 C 0.24 5.65 1.76 -69.08 -0.12 5.53 16 4 H 0.05 1.25 6.07 -51.93 -0.32 0.94 16 5 C -0.54 -14.36 9.23 -34.44 -0.32 -14.68 16 6 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 7 C 0.08 2.27 5.38 -17.82 -0.10 2.17 16 8 N -0.89 -26.29 13.96 55.43 0.77 -25.51 16 9 Si 0.86 21.03 25.78 -169.99 -4.38 16.65 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.24 -5.69 5.25 56.52 0.30 -5.39 16 13 N -0.70 -13.63 3.71 -54.93 -0.20 -13.84 16 14 C 0.51 9.40 4.07 -10.98 -0.04 9.35 16 15 O -0.53 -11.58 14.40 5.56 0.08 -11.50 16 16 C 0.08 1.16 2.05 -68.87 -0.14 1.02 16 17 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 18 N -0.66 -9.05 5.33 -107.99 -0.58 -9.62 16 19 C 0.06 0.63 6.55 -3.84 -0.03 0.61 16 20 C -0.12 -1.17 5.74 -26.65 -0.15 -1.32 16 21 C -0.11 -1.11 4.79 -26.61 -0.13 -1.24 16 22 C -0.05 -0.60 0.54 -154.43 -0.08 -0.69 16 23 C -0.13 -1.86 7.40 37.16 0.27 -1.58 16 24 C -0.16 -1.91 7.79 37.16 0.29 -1.62 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.93 4.47 -51.93 -0.23 0.70 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.46 4.59 -51.93 -0.24 1.23 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.39 6.86 8.15 -40.82 -0.33 6.53 16 32 H 0.35 4.84 8.78 -39.29 -0.35 4.50 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.78 6.73 -51.93 -0.35 0.43 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.97 5.69 -51.93 -0.30 0.68 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.08 6.17 -51.93 -0.32 0.76 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.01 5.76 -51.93 -0.30 0.71 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -30.08 322.17 -7.26 -37.34 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -7.46 Total: 9.63 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -0.34 Total: -8.00 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.01 Total: -48.97 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.38 Total: 16.65 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.08 -7.26 -37.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234035646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.682 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds