Wall clock time and date at job start Mon Mar 30 2020 05:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46915 * 2 1 4 4 H 1.08998 * 109.47276 * 304.92460 * 3 2 1 5 5 C 1.50702 * 109.46602 * 184.93053 * 3 2 1 6 6 H 1.08005 * 119.99757 * 244.91615 * 5 3 2 7 7 C 1.37872 * 120.00183 * 64.92364 * 5 3 2 8 8 N 1.31516 * 119.99730 * 191.72970 * 7 5 3 9 9 Si 1.86796 * 120.00198 * 11.73058 * 7 5 3 10 10 H 1.48500 * 109.47183 * 91.09642 * 9 7 5 11 11 H 1.48502 * 109.46917 * 211.09654 * 9 7 5 12 12 H 1.48503 * 109.46966 * 331.09450 * 9 7 5 13 13 N 1.46496 * 109.47229 * 64.93217 * 3 2 1 14 14 C 1.34779 * 119.99362 * 262.61338 * 13 3 2 15 15 O 1.21275 * 120.00818 * 4.64626 * 14 13 3 16 16 C 1.50707 * 119.99640 * 184.64765 * 14 13 3 17 17 H 1.09000 * 109.46291 * 31.90430 * 16 14 13 18 18 N 1.46845 * 109.46460 * 151.88610 * 16 14 13 19 19 C 1.46846 * 111.19880 * 181.75659 * 18 16 14 20 20 C 1.53030 * 109.52378 * 298.25602 * 19 18 16 21 21 C 1.53122 * 109.27853 * 59.17812 * 20 19 18 22 22 C 1.53045 * 109.45980 * 271.92625 * 16 14 13 23 23 C 1.52996 * 109.50233 * 300.74543 * 22 16 14 24 24 C 1.52997 * 109.50179 * 60.86623 * 22 16 14 25 25 H 1.09004 * 109.46616 * 180.49164 * 1 2 3 26 26 H 1.08993 * 109.46784 * 300.49435 * 1 2 3 27 27 H 1.09000 * 109.46834 * 60.50054 * 1 2 3 28 28 H 1.09000 * 109.46831 * 240.00010 * 2 1 3 29 29 H 1.08995 * 109.46848 * 120.00136 * 2 1 3 30 30 H 0.97007 * 119.99844 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00439 * 82.61008 * 13 3 2 32 32 H 1.00905 * 110.99673 * 305.85795 * 18 16 14 33 33 H 1.08998 * 109.46110 * 58.27085 * 19 18 16 34 34 H 1.09003 * 109.45921 * 178.24906 * 19 18 16 35 35 H 1.08998 * 109.50463 * 179.12314 * 20 19 18 36 36 H 1.08997 * 109.50552 * 299.23837 * 20 19 18 37 37 H 1.09007 * 109.52152 * 62.25308 * 21 20 19 38 38 H 1.09000 * 109.52306 * 182.37662 * 21 20 19 39 39 H 1.08996 * 109.47147 * 66.51538 * 23 22 16 40 40 H 1.09005 * 109.46855 * 186.51128 * 23 22 16 41 41 H 1.08997 * 109.47364 * 306.51259 * 23 22 16 42 42 H 1.08998 * 109.47784 * 59.99768 * 24 22 16 43 43 H 1.09004 * 109.46799 * 179.97438 * 24 22 16 44 44 H 1.09003 * 109.46970 * 299.99307 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9812 -0.8426 5 6 3.5421 1.4442 -0.1221 6 1 4.1494 1.8169 0.6895 7 6 4.1409 0.9701 -1.2699 8 7 5.4381 0.7544 -1.2938 9 14 3.1100 0.6342 -2.7910 10 1 3.0694 1.8517 -3.6403 11 1 3.7115 -0.4854 -3.5592 12 1 1.7297 0.2691 -2.3827 13 7 1.6510 2.0980 1.2511 14 6 0.5507 2.8753 1.2907 15 8 -0.1640 2.9650 0.3150 16 6 0.2083 3.6330 2.5476 17 1 1.1262 3.9107 3.0657 18 7 -0.5427 4.8457 2.1987 19 6 -0.8607 5.6359 3.3948 20 6 -1.7451 4.8111 4.3325 21 6 -1.0064 3.5290 4.7265 22 6 -0.6445 2.7484 3.4599 23 6 -1.9244 2.3423 2.7266 24 6 0.1463 1.4953 3.8410 25 1 -0.3633 -1.0277 0.0088 26 1 -0.3633 0.5215 0.8855 27 1 -0.3633 0.5060 -0.8945 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.8594 0.4205 -2.1013 31 1 2.1853 1.9726 2.0509 32 1 -0.0399 5.4002 1.5220 33 1 0.0624 5.9042 3.9088 34 1 -1.3895 6.5426 3.1010 35 1 -1.9681 5.3922 5.2273 36 1 -2.6743 4.5541 3.8240 37 1 -0.0965 3.7850 5.2693 38 1 -1.6493 2.9184 5.3605 39 1 -1.6724 1.6928 1.8884 40 1 -2.5833 1.8104 3.4131 41 1 -2.4295 3.2343 2.3561 42 1 1.0570 1.7856 4.3648 43 1 -0.4614 0.8659 4.4911 44 1 0.4068 0.9418 2.9388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234035646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:46 Heat of formation + Delta-G solvation = -71.162640 kcal Electronic energy + Delta-G solvation = -22563.908956 eV Core-core repulsion = 19514.526617 eV Total energy + Delta-G solvation = -3049.382340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57558 -39.27640 -36.98889 -34.96441 -34.31595 -33.33572 -32.34349 -29.43803 -28.09190 -27.75270 -25.62698 -24.39735 -22.66769 -22.13289 -21.25228 -19.65836 -18.83772 -17.74281 -17.50362 -16.88041 -16.60632 -15.92244 -15.59344 -15.21164 -14.87185 -14.80494 -14.61052 -14.33158 -14.27611 -13.81154 -13.62683 -13.52687 -13.23992 -12.93873 -12.91095 -12.75654 -12.66068 -12.36187 -12.25437 -11.92204 -11.82973 -11.59174 -11.42138 -11.35152 -11.20384 -11.16842 -10.69317 -10.34918 -9.67133 -9.34465 -8.37333 -6.39029 1.29975 1.36715 1.46272 1.85506 2.29653 2.43592 2.99166 3.26082 3.67458 3.84223 3.95736 4.14801 4.21724 4.23276 4.33904 4.39571 4.45511 4.54822 4.59937 4.68573 4.80140 4.84071 4.88094 4.91201 5.01694 5.08463 5.11071 5.15226 5.17676 5.21542 5.24289 5.33098 5.38755 5.45177 5.47565 5.58961 5.67619 5.77903 6.00471 6.21380 6.34915 6.62429 6.96939 7.24129 7.56732 8.78054 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029791 B = 0.005643 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.644171 B = 4960.975558 C = 5100.386012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.132 4.132 3 C 0.251 3.749 4 H 0.024 0.976 5 C -0.534 4.534 6 H 0.050 0.950 7 C 0.034 3.966 8 N -0.932 5.932 9 Si 0.913 3.087 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.229 1.229 13 N -0.702 5.702 14 C 0.511 3.489 15 O -0.567 6.567 16 C 0.088 3.912 17 H 0.060 0.940 18 N -0.679 5.679 19 C 0.058 3.942 20 C -0.118 4.118 21 C -0.104 4.104 22 C -0.046 4.046 23 C -0.128 4.128 24 C -0.156 4.156 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.268 0.732 31 H 0.401 0.599 32 H 0.342 0.658 33 H 0.036 0.964 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.029 0.971 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.851 5.034 13.841 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.171 4.171 3 C 0.146 3.854 4 H 0.042 0.958 5 C -0.572 4.572 6 H 0.068 0.932 7 C -0.166 4.166 8 N -0.571 5.571 9 Si 0.737 3.263 10 H -0.210 1.210 11 H -0.205 1.205 12 H -0.152 1.152 13 N -0.352 5.352 14 C 0.297 3.703 15 O -0.446 6.446 16 C -0.025 4.025 17 H 0.078 0.922 18 N -0.311 5.311 19 C -0.070 4.070 20 C -0.155 4.155 21 C -0.141 4.141 22 C -0.047 4.047 23 C -0.185 4.185 24 C -0.213 4.213 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.235 0.765 32 H 0.161 0.839 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.802 4.729 13.019 20.272 hybrid contribution 1.519 0.158 -0.756 1.704 sum -13.283 4.887 12.262 18.727 Atomic orbital electron populations 1.21715 0.95796 1.00630 1.01031 1.22218 0.95224 0.98258 1.01386 1.18694 0.92705 0.89917 0.84038 0.95776 1.21312 0.90688 1.42358 1.02851 0.93198 1.25493 0.95626 0.94264 1.01233 1.70030 1.11652 1.45946 1.29466 0.86447 0.81792 0.78036 0.79996 1.20991 1.20518 1.15195 1.46081 1.26769 1.48849 1.13507 1.20867 0.80136 0.79425 0.89836 1.90632 1.50469 1.65163 1.38287 1.21482 0.96315 0.92308 0.92406 0.92210 1.59982 1.49721 1.07320 1.14086 1.22060 0.98841 0.96096 0.90034 1.21653 0.98742 0.96116 0.99035 1.21649 1.01018 0.96405 0.95072 1.20481 0.95051 0.94461 0.94735 1.21751 0.96630 1.01149 0.98979 1.22076 1.00599 0.96869 1.01787 0.92202 0.92850 0.94907 0.92870 0.91967 0.92264 0.76473 0.83924 0.94592 0.89512 0.89412 0.91649 0.91231 0.90025 0.95217 0.91846 0.92008 0.91377 0.90536 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 8.92 71.98 0.64 -4.46 16 2 C -0.13 -5.61 4.85 30.60 0.15 -5.46 16 3 C 0.25 11.74 1.76 44.25 0.08 11.82 16 4 H 0.02 1.26 6.07 -2.39 -0.01 1.25 16 5 C -0.53 -29.13 9.23 25.60 0.24 -28.90 16 6 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 7 C 0.03 1.90 5.38 84.65 0.46 2.36 16 8 N -0.93 -56.11 13.96 21.45 0.30 -55.81 16 9 Si 0.91 43.87 25.78 68.60 1.77 45.64 16 10 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.23 -10.37 5.25 99.48 0.52 -9.85 16 13 N -0.70 -27.22 3.71 -446.10 -1.66 -28.87 16 14 C 0.51 18.72 4.07 87.66 0.36 19.08 16 15 O -0.57 -24.88 14.40 -3.02 -0.04 -24.92 16 16 C 0.09 2.42 2.05 44.20 0.09 2.51 16 17 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 18 N -0.68 -17.63 5.33 -495.56 -2.64 -20.27 16 19 C 0.06 1.08 6.55 86.32 0.57 1.64 16 20 C -0.12 -1.90 5.74 30.64 0.18 -1.72 16 21 C -0.10 -1.75 4.79 30.67 0.15 -1.60 16 22 C -0.05 -1.06 0.54 -52.13 -0.03 -1.09 16 23 C -0.13 -3.33 7.40 71.98 0.53 -2.79 16 24 C -0.16 -3.42 7.79 71.98 0.56 -2.86 16 25 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 26 H 0.05 1.97 4.47 -2.39 -0.01 1.96 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 2.36 4.59 -2.39 -0.01 2.35 16 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 31 H 0.40 13.96 8.15 -92.71 -0.76 13.20 16 32 H 0.34 9.35 8.78 -89.69 -0.79 8.56 16 33 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.20 6.73 -2.39 -0.02 1.18 16 37 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.03 0.94 5.69 -2.39 -0.01 0.92 16 40 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.06 1.74 6.17 -2.39 -0.01 1.73 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.25 5.76 -2.39 -0.01 1.24 16 Total: -1.00 -65.77 322.17 0.96 -64.82 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -0.73 Total: 30.89 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 3.96 Total: -11.47 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -4.00 Total: -104.95 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.04 Total: -24.92 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.77 Total: 45.64 kcal Total: -65.77 0.96 -64.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234035646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.346 kcal (2) G-P(sol) polarization free energy of solvation -65.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds