Wall clock time and date at job start Mon Mar 30 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47409 * 2 1 4 4 H 1.09000 * 109.46686 * 304.89313 * 3 2 1 5 5 C 1.50697 * 109.47178 * 184.89921 * 3 2 1 6 6 H 1.07997 * 120.00189 * 245.45129 * 5 3 2 7 7 C 1.37881 * 120.00231 * 65.45168 * 5 3 2 8 8 N 1.31507 * 119.99864 * 9.46446 * 7 5 3 9 9 Si 1.86800 * 119.99927 * 189.47220 * 7 5 3 10 10 H 1.48495 * 109.47271 * 84.99472 * 9 7 5 11 11 H 1.48497 * 109.46744 * 204.99038 * 9 7 5 12 12 H 1.48500 * 109.47055 * 324.98688 * 9 7 5 13 13 N 1.46498 * 109.46986 * 64.89441 * 3 2 1 14 14 C 1.34775 * 120.00154 * 274.99881 * 13 3 2 15 15 O 1.21282 * 120.00167 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99748 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.46757 * 60.00824 * 16 14 13 18 18 C 1.52994 * 109.47435 * 300.00696 * 16 14 13 19 19 C 1.53005 * 109.47059 * 180.02562 * 18 16 14 20 20 C 1.53000 * 109.47226 * 59.99507 * 19 18 16 21 21 C 1.53003 * 109.47087 * 300.00234 * 20 19 18 22 22 C 1.52996 * 109.47044 * 60.00175 * 21 20 19 23 23 H 1.09002 * 109.47142 * 60.00130 * 22 21 20 24 24 C 1.53003 * 109.47044 * 180.02562 * 22 21 20 25 25 N 1.46906 * 109.46543 * 294.99779 * 24 22 21 26 26 H 1.09005 * 109.46863 * 60.00731 * 1 2 3 27 27 H 1.09000 * 109.47629 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47505 * 300.00675 * 1 2 3 29 29 H 1.09005 * 109.47476 * 239.99474 * 2 1 3 30 30 H 1.09000 * 109.46687 * 119.99959 * 2 1 3 31 31 H 0.97004 * 120.00400 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99172 * 95.00792 * 13 3 2 33 33 H 1.09002 * 109.46847 * 299.99479 * 18 16 14 34 34 H 1.08998 * 109.47192 * 60.00031 * 18 16 14 35 35 H 1.08997 * 109.47169 * 180.02562 * 19 18 16 36 36 H 1.09004 * 109.46797 * 299.99922 * 19 18 16 37 37 H 1.09004 * 109.46894 * 60.00474 * 20 19 18 38 38 H 1.08996 * 109.47159 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.47112 * 299.99352 * 21 20 19 40 40 H 1.08998 * 109.46775 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47287 * 175.00062 * 24 22 21 42 42 H 1.09000 * 109.47469 * 54.99309 * 24 22 21 43 43 H 1.00895 * 111.00175 * 56.05078 * 25 24 22 44 44 H 1.00909 * 110.99435 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9809 -0.8429 5 6 3.5421 1.4442 -0.1213 6 1 4.1493 1.8089 0.6939 7 6 4.1413 0.9800 -1.2731 8 7 3.4098 0.7113 -2.3325 9 14 5.9920 0.7325 -1.3287 10 1 6.3289 -0.6069 -0.7833 11 1 6.4619 0.8271 -2.7342 12 1 6.6562 1.7807 -0.5131 13 7 1.6503 2.0982 1.2507 14 6 0.4329 2.6653 1.3634 15 8 -0.3403 2.6323 0.4296 16 6 0.0318 3.3393 2.6503 17 1 0.7229 4.1547 2.8640 18 6 0.0735 2.3228 3.7930 19 6 -0.3343 3.0071 5.0993 20 6 -1.7531 3.5630 4.9626 21 6 -1.7947 4.5795 3.8198 22 6 -1.3870 3.8952 2.5135 23 1 -2.0778 3.0796 2.2996 24 6 -1.4279 4.9119 1.3709 25 7 -2.8121 5.3570 1.1609 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8312 0.3843 -3.1427 32 1 2.2687 2.1243 1.9977 33 1 -0.6176 1.5074 3.5793 34 1 1.0842 1.9265 3.8901 35 1 -0.3042 2.2830 5.9135 36 1 0.3564 3.8227 5.3132 37 1 -2.4439 2.7473 4.7487 38 1 -2.0435 4.0508 5.8931 39 1 -1.1040 5.3951 4.0338 40 1 -2.8056 4.9752 3.7222 41 1 -1.0530 4.4483 0.4584 42 1 -0.8051 5.7695 1.6251 43 1 -3.2043 5.7321 2.0115 44 1 -2.8658 6.0292 0.4103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251351934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:22 Heat of formation + Delta-G solvation = -72.729337 kcal Electronic energy + Delta-G solvation = -22003.232967 eV Core-core repulsion = 18953.782690 eV Total energy + Delta-G solvation = -3049.450277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.00052 -37.63784 -35.05602 -34.38155 -32.36006 -31.47392 -30.32983 -30.05423 -26.95163 -24.67825 -23.54181 -22.74529 -20.88615 -20.43244 -19.55747 -19.18961 -17.17760 -15.93518 -15.73612 -15.32480 -14.95196 -14.65614 -14.30089 -14.17266 -13.92905 -13.53415 -13.37141 -12.82173 -12.71522 -12.39017 -11.93213 -11.81899 -11.47038 -11.38726 -11.28341 -11.08399 -10.99453 -10.95742 -10.76960 -10.52279 -10.32449 -10.20750 -10.17450 -10.02664 -9.61866 -9.07213 -8.69023 -8.45560 -8.44796 -7.74169 -6.12975 -4.18157 3.25380 3.32327 3.33343 3.47773 4.13817 4.39957 4.60782 4.75085 4.81501 4.90552 5.19873 5.20792 5.36131 5.44731 5.48048 5.49853 5.53789 5.64483 5.73935 5.87950 5.95378 6.08806 6.10451 6.15833 6.27206 6.28766 6.38491 6.43599 6.59867 6.60694 6.67399 7.03056 7.21177 7.32436 7.37124 7.48731 7.58849 7.65142 7.74983 7.88830 8.11095 8.74829 8.82955 9.22894 9.48412 10.95147 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.005018 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.128645 B = 5578.782166 C = 5895.603488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.269 3.731 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.708 5.708 14 C 0.503 3.497 15 O -0.540 6.540 16 C -0.105 4.105 17 H 0.087 0.913 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.060 4.060 23 H 0.084 0.916 24 C 0.053 3.947 25 N -0.847 5.847 26 H 0.051 0.949 27 H 0.021 0.979 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.012 0.988 43 H 0.329 0.671 44 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.577 6.353 13.381 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.356 5.356 14 C 0.288 3.712 15 O -0.419 6.419 16 C -0.127 4.127 17 H 0.105 0.895 18 C -0.147 4.147 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.079 4.079 23 H 0.102 0.898 24 C -0.077 4.077 25 N -0.376 5.376 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.030 0.970 43 H 0.141 0.859 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.240 5.482 12.298 15.785 hybrid contribution 1.792 0.779 0.548 2.030 sum -6.447 6.261 12.846 15.678 Atomic orbital electron populations 1.21835 0.97958 0.98049 1.01617 1.21837 0.93011 0.99946 1.00982 1.18754 0.94165 0.88879 0.81524 0.92713 1.21187 0.90726 1.43914 1.01699 0.92224 1.24879 0.98335 0.95206 0.95018 1.69983 1.35695 1.43794 1.02140 0.86559 0.85191 0.78695 0.77235 1.20449 1.21199 1.19966 1.46498 1.14777 1.56012 1.18284 1.20332 0.82600 0.79329 0.88935 1.90620 1.51335 1.59351 1.40612 1.21376 0.98255 0.98748 0.94305 0.89528 1.21493 1.02171 0.97605 0.93391 1.21532 0.96756 0.99992 0.97173 1.21527 0.97165 0.98921 0.98008 1.21639 1.01012 0.98013 0.94757 1.20868 0.95207 0.98437 0.93409 0.89777 1.22225 0.88104 0.95974 1.01422 1.58734 1.20876 1.47163 1.10804 0.92982 0.95964 0.93874 0.90422 0.94866 0.92595 0.78201 0.91425 0.91309 0.91943 0.92005 0.91871 0.92344 0.92462 0.91888 0.87457 0.96981 0.85887 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.15 0.32 -2.73 16 2 C -0.12 -2.84 5.50 -26.73 -0.15 -2.99 16 3 C 0.27 6.67 2.11 -69.08 -0.15 6.53 16 4 H 0.06 1.60 7.52 -51.93 -0.39 1.21 16 5 C -0.54 -14.10 8.66 -34.44 -0.30 -14.40 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -24.91 12.16 55.43 0.67 -24.24 16 9 Si 0.90 20.59 29.55 -169.99 -5.02 15.57 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.71 -14.29 4.91 -54.93 -0.27 -14.56 16 14 C 0.50 9.54 5.40 -10.99 -0.06 9.48 16 15 O -0.54 -12.04 10.81 5.56 0.06 -11.98 16 16 C -0.10 -1.49 2.06 -91.77 -0.19 -1.68 16 17 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 18 C -0.11 -1.33 5.10 -26.73 -0.14 -1.47 16 19 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 20 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 21 C -0.12 -1.23 4.97 -26.73 -0.13 -1.36 16 22 C -0.06 -0.82 1.57 -90.62 -0.14 -0.96 16 23 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 24 C 0.05 0.78 5.98 -3.82 -0.02 0.75 16 25 N -0.85 -10.82 9.62 -10.37 -0.10 -10.92 16 26 H 0.05 1.24 7.84 -51.93 -0.41 0.84 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.92 5.65 -51.93 -0.29 0.63 16 29 H 0.08 2.05 6.80 -51.93 -0.35 1.70 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.39 6.86 7.94 -40.82 -0.32 6.54 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.82 7.56 -51.93 -0.39 0.42 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.62 6.68 -51.93 -0.35 0.27 16 41 H 0.11 2.00 5.42 -51.93 -0.28 1.72 16 42 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.33 3.48 7.25 -39.29 -0.28 3.19 16 44 H 0.34 3.84 9.08 -39.29 -0.36 3.48 16 LS Contribution 332.53 15.07 5.01 5.01 Total: -1.00 -29.28 332.53 -8.63 -37.91 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.62 Total: 12.87 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -1.37 Total: -9.66 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.30 Total: -49.72 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.06 Total: -11.98 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.28 -8.63 -37.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251351934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.821 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds