Wall clock time and date at job start Mon Mar 30 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47409 * 2 1 4 4 H 1.09000 * 109.46686 * 304.89313 * 3 2 1 5 5 C 1.50697 * 109.47178 * 184.89921 * 3 2 1 6 6 H 1.07997 * 120.00189 * 245.45129 * 5 3 2 7 7 C 1.37881 * 120.00231 * 65.45168 * 5 3 2 8 8 N 1.31507 * 119.99864 * 9.46446 * 7 5 3 9 9 Si 1.86800 * 119.99927 * 189.47220 * 7 5 3 10 10 H 1.48495 * 109.47271 * 84.99472 * 9 7 5 11 11 H 1.48497 * 109.46744 * 204.99038 * 9 7 5 12 12 H 1.48500 * 109.47055 * 324.98688 * 9 7 5 13 13 N 1.46498 * 109.46986 * 64.89441 * 3 2 1 14 14 C 1.34775 * 120.00154 * 274.99881 * 13 3 2 15 15 O 1.21282 * 120.00167 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99748 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.46757 * 60.00824 * 16 14 13 18 18 C 1.52994 * 109.47435 * 300.00696 * 16 14 13 19 19 C 1.53005 * 109.47059 * 180.02562 * 18 16 14 20 20 C 1.53000 * 109.47226 * 59.99507 * 19 18 16 21 21 C 1.53003 * 109.47087 * 300.00234 * 20 19 18 22 22 C 1.52996 * 109.47044 * 60.00175 * 21 20 19 23 23 H 1.09002 * 109.47142 * 60.00130 * 22 21 20 24 24 C 1.53003 * 109.47044 * 180.02562 * 22 21 20 25 25 N 1.46906 * 109.46543 * 294.99779 * 24 22 21 26 26 H 1.09005 * 109.46863 * 60.00731 * 1 2 3 27 27 H 1.09000 * 109.47629 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47505 * 300.00675 * 1 2 3 29 29 H 1.09005 * 109.47476 * 239.99474 * 2 1 3 30 30 H 1.09000 * 109.46687 * 119.99959 * 2 1 3 31 31 H 0.97004 * 120.00400 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99172 * 95.00792 * 13 3 2 33 33 H 1.09002 * 109.46847 * 299.99479 * 18 16 14 34 34 H 1.08998 * 109.47192 * 60.00031 * 18 16 14 35 35 H 1.08997 * 109.47169 * 180.02562 * 19 18 16 36 36 H 1.09004 * 109.46797 * 299.99922 * 19 18 16 37 37 H 1.09004 * 109.46894 * 60.00474 * 20 19 18 38 38 H 1.08996 * 109.47159 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.47112 * 299.99352 * 21 20 19 40 40 H 1.08998 * 109.46775 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47287 * 175.00062 * 24 22 21 42 42 H 1.09000 * 109.47469 * 54.99309 * 24 22 21 43 43 H 1.00895 * 111.00175 * 56.05078 * 25 24 22 44 44 H 1.00909 * 110.99435 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9809 -0.8429 5 6 3.5421 1.4442 -0.1213 6 1 4.1493 1.8089 0.6939 7 6 4.1413 0.9800 -1.2731 8 7 3.4098 0.7113 -2.3325 9 14 5.9920 0.7325 -1.3287 10 1 6.3289 -0.6069 -0.7833 11 1 6.4619 0.8271 -2.7342 12 1 6.6562 1.7807 -0.5131 13 7 1.6503 2.0982 1.2507 14 6 0.4329 2.6653 1.3634 15 8 -0.3403 2.6323 0.4296 16 6 0.0318 3.3393 2.6503 17 1 0.7229 4.1547 2.8640 18 6 0.0735 2.3228 3.7930 19 6 -0.3343 3.0071 5.0993 20 6 -1.7531 3.5630 4.9626 21 6 -1.7947 4.5795 3.8198 22 6 -1.3870 3.8952 2.5135 23 1 -2.0778 3.0796 2.2996 24 6 -1.4279 4.9119 1.3709 25 7 -2.8121 5.3570 1.1609 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8312 0.3843 -3.1427 32 1 2.2687 2.1243 1.9977 33 1 -0.6176 1.5074 3.5793 34 1 1.0842 1.9265 3.8901 35 1 -0.3042 2.2830 5.9135 36 1 0.3564 3.8227 5.3132 37 1 -2.4439 2.7473 4.7487 38 1 -2.0435 4.0508 5.8931 39 1 -1.1040 5.3951 4.0338 40 1 -2.8056 4.9752 3.7222 41 1 -1.0530 4.4483 0.4584 42 1 -0.8051 5.7695 1.6251 43 1 -3.2043 5.7321 2.0115 44 1 -2.8658 6.0292 0.4103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251351934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:21 Heat of formation + Delta-G solvation = -92.917263 kcal Electronic energy + Delta-G solvation = -22004.108381 eV Core-core repulsion = 18953.782690 eV Total energy + Delta-G solvation = -3050.325691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.35789 -38.95994 -36.80618 -35.51860 -34.22223 -33.09998 -31.67849 -31.02707 -28.87969 -25.87937 -25.01036 -24.26355 -22.15904 -21.70985 -21.04268 -20.58754 -18.87378 -17.44021 -17.25743 -16.87355 -16.27604 -16.22915 -15.65916 -15.37895 -15.00296 -14.84392 -14.59851 -14.35255 -14.15002 -13.75641 -13.43260 -13.24012 -13.21756 -12.90176 -12.84132 -12.61200 -12.38433 -12.22641 -12.10144 -12.03707 -11.90578 -11.63234 -11.40853 -11.25759 -11.09976 -10.95308 -10.53009 -10.17007 -9.59868 -9.45395 -8.18602 -6.31571 1.43902 1.45115 1.54405 1.96298 2.37703 2.73098 3.12963 3.55490 3.76606 3.84772 3.96706 4.20173 4.38116 4.41067 4.45850 4.47955 4.50087 4.53694 4.56513 4.59138 4.72260 4.74039 4.95994 5.03671 5.07522 5.17922 5.23973 5.26647 5.32327 5.34424 5.37582 5.43621 5.47696 5.57427 5.61237 5.66813 5.76759 5.98085 6.10589 6.29578 6.67966 6.78515 7.09076 7.35579 7.70345 8.89982 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.005018 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.128645 B = 5578.782166 C = 5895.603488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.706 5.706 14 C 0.497 3.503 15 O -0.577 6.577 16 C -0.094 4.094 17 H 0.105 0.895 18 C -0.106 4.106 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.109 4.109 22 C -0.055 4.055 23 H 0.055 0.945 24 C 0.056 3.944 25 N -0.853 5.853 26 H 0.023 0.977 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.400 0.600 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.024 0.976 43 H 0.345 0.655 44 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 7.071 16.472 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.355 5.355 14 C 0.285 3.715 15 O -0.458 6.458 16 C -0.115 4.115 17 H 0.123 0.877 18 C -0.144 4.144 19 C -0.149 4.149 20 C -0.155 4.155 21 C -0.146 4.146 22 C -0.074 4.074 23 H 0.073 0.927 24 C -0.074 4.074 25 N -0.384 5.384 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.159 0.841 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.672 6.219 15.438 18.326 hybrid contribution 1.538 0.594 -0.466 1.714 sum -6.133 6.813 14.971 17.555 Atomic orbital electron populations 1.21661 0.96735 0.99110 1.00443 1.21683 0.93980 0.99218 1.00096 1.18302 0.93506 0.88922 0.81860 0.98242 1.21555 0.91511 1.43576 1.02026 0.91098 1.25767 1.03082 0.94854 0.94594 1.70139 1.37764 1.44857 1.02784 0.85457 0.79382 0.79035 0.77069 1.19597 1.21482 1.18774 1.46277 1.15797 1.56241 1.17205 1.21254 0.81506 0.78497 0.90260 1.90623 1.52255 1.60397 1.42480 1.21376 0.98869 0.99280 0.92006 0.87706 1.21510 1.02277 0.96778 0.93877 1.21520 0.97014 1.00572 0.95753 1.21541 0.96965 0.98524 0.98488 1.21595 1.01813 0.98301 0.92938 1.20808 0.94131 0.97464 0.95002 0.92659 1.22022 0.89183 0.96394 0.99844 1.58646 1.19868 1.47895 1.12023 0.95780 0.93637 0.93360 0.93353 0.93411 0.92713 0.76532 0.92886 0.90775 0.90422 0.90649 0.92698 0.90022 0.91099 0.90922 0.91945 0.95781 0.84108 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.51 71.98 0.61 -4.95 16 2 C -0.11 -5.43 5.50 30.59 0.17 -5.27 16 3 C 0.28 14.27 2.11 44.24 0.09 14.37 16 4 H 0.00 -0.02 7.52 -2.39 -0.02 -0.04 16 5 C -0.55 -29.10 8.66 25.60 0.22 -28.88 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.94 5.16 84.66 0.44 1.38 16 8 N -0.92 -53.75 12.16 21.45 0.26 -53.49 16 9 Si 0.97 42.27 29.55 68.60 2.03 44.29 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.71 -28.81 4.91 -446.10 -2.19 -31.00 16 14 C 0.50 19.24 5.40 87.66 0.47 19.71 16 15 O -0.58 -27.08 10.81 -3.04 -0.03 -27.12 16 16 C -0.09 -2.55 2.06 -11.54 -0.02 -2.58 16 17 H 0.10 2.52 8.14 -2.39 -0.02 2.51 16 18 C -0.11 -2.38 5.10 30.59 0.16 -2.23 16 19 C -0.11 -1.78 5.92 30.60 0.18 -1.60 16 20 C -0.12 -1.86 5.92 30.60 0.18 -1.68 16 21 C -0.11 -1.98 4.97 30.59 0.15 -1.82 16 22 C -0.05 -1.45 1.57 -10.79 -0.02 -1.46 16 23 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 24 C 0.06 1.65 5.98 86.30 0.52 2.17 16 25 N -0.85 -21.35 9.62 -186.71 -1.80 -23.14 16 26 H 0.02 1.19 7.84 -2.38 -0.02 1.17 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 2.12 5.65 -2.39 -0.01 2.10 16 29 H 0.05 2.65 6.80 -2.38 -0.02 2.63 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.40 13.89 7.94 -92.71 -0.74 13.16 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.58 7.56 -2.39 -0.02 1.56 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.20 6.68 -2.39 -0.02 1.18 16 41 H 0.06 2.44 5.42 -2.39 -0.01 2.43 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.34 6.69 7.25 -89.70 -0.65 6.04 16 44 H 0.34 7.72 9.08 -89.69 -0.81 6.91 16 Total: -1.00 -66.65 332.53 0.22 -66.43 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -1.20 Total: 36.86 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 3.15 Total: -12.84 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -3.73 Total: -107.63 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.03 Total: -27.12 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -66.65 0.22 -66.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251351934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.484 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds