Wall clock time and date at job start Mon Mar 30 2020 05:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47088 * 2 1 4 4 H 1.09003 * 110.53873 * 52.38337 * 3 2 1 5 5 C 1.54895 * 110.48688 * 289.77639 * 3 2 1 6 6 C 1.54885 * 102.74824 * 203.37465 * 5 3 2 7 7 C 1.54261 * 104.19468 * 37.94732 * 6 5 3 8 8 H 1.09001 * 110.04035 * 95.66931 * 7 6 5 9 9 N 1.46905 * 110.03448 * 217.10283 * 7 6 5 10 10 C 1.46905 * 110.99786 * 281.79402 * 9 7 6 11 11 C 1.50696 * 109.47141 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99900 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00351 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00511 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47274 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00379 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99907 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99909 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99833 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47351 * 59.99613 * 19 17 15 21 21 H 1.48497 * 109.46882 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46808 * 299.99326 * 19 17 15 23 23 C 1.53878 * 106.59886 * 336.38558 * 7 6 5 24 24 H 1.08997 * 110.03250 * 119.28642 * 23 7 6 25 25 C 1.53005 * 110.07243 * 240.69507 * 23 7 6 26 26 H 1.08997 * 109.47681 * 60.00232 * 1 2 3 27 27 H 1.09003 * 109.46914 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47043 * 299.99448 * 1 2 3 29 29 H 1.09005 * 109.47114 * 240.00236 * 2 1 3 30 30 H 1.08994 * 109.47217 * 119.99988 * 2 1 3 31 31 H 1.08992 * 110.75588 * 321.69457 * 5 3 2 32 32 H 1.09008 * 110.75166 * 84.87763 * 5 3 2 33 33 H 1.09002 * 110.48290 * 156.62047 * 6 5 3 34 34 H 1.08998 * 110.49189 * 279.12870 * 6 5 3 35 35 H 1.00892 * 111.00329 * 157.83811 * 9 7 6 36 36 H 1.09002 * 109.46832 * 299.99739 * 10 9 7 37 37 H 1.09005 * 109.47141 * 59.99536 * 10 9 7 38 38 H 0.97006 * 119.99608 * 0.02562 * 13 11 10 39 39 H 1.09002 * 109.47266 * 299.99939 * 14 13 11 40 40 H 1.09005 * 109.47100 * 59.99977 * 14 13 11 41 41 H 0.96998 * 119.99580 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.46944 * 171.29845 * 25 23 7 43 43 H 1.08999 * 109.47517 * 291.30322 * 25 23 7 44 44 H 1.09007 * 109.47119 * 51.30296 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 2.0107 0.8085 5 6 1.7578 2.1172 -1.3654 6 6 2.8151 3.2481 -1.4128 7 6 4.0700 2.6197 -0.7724 8 1 4.7297 2.2302 -1.5478 9 7 4.7784 3.6218 0.0351 10 6 5.5634 4.5252 -0.8169 11 6 6.2738 5.5372 0.0445 12 8 6.1397 5.5086 1.2496 13 7 7.0588 6.4736 -0.5241 14 6 7.7499 7.4571 0.3133 15 6 8.5551 8.3838 -0.5607 16 1 8.5527 8.2530 -1.6327 17 6 9.2957 9.3981 0.0084 18 7 9.2990 9.5571 1.3138 19 14 10.2932 10.5473 -1.0751 20 1 9.3864 11.2505 -2.0176 21 1 10.9937 11.5441 -0.2262 22 1 11.2921 9.7610 -1.8428 23 6 3.5771 1.4717 0.1259 24 1 3.9976 0.5251 -0.2136 25 6 3.9792 1.7322 1.5790 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.9089 1.4126 -2.1830 32 1 0.7481 2.5272 -1.3923 33 1 3.0175 3.5381 -2.4438 34 1 2.4794 4.1088 -0.8343 35 1 5.3629 3.1799 0.7286 36 1 6.2969 3.9477 -1.3797 37 1 4.8982 5.0410 -1.5095 38 1 7.1663 6.4962 -1.4879 39 1 7.0164 8.0348 0.8758 40 1 8.4149 6.9413 1.0061 41 1 9.8197 10.2709 1.7141 42 1 3.4970 0.9997 2.2262 43 1 5.0614 1.6475 1.6774 44 1 3.6655 2.7352 1.8685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251750249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:23 Heat of formation + Delta-G solvation = -63.471989 kcal Electronic energy + Delta-G solvation = -20510.147477 eV Core-core repulsion = 17461.098629 eV Total energy + Delta-G solvation = -3049.048848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.68335 -38.54185 -35.19430 -34.08798 -32.37425 -32.14645 -31.43873 -28.24398 -26.81575 -25.47908 -24.59262 -22.60463 -22.23915 -20.32453 -19.63471 -19.07085 -17.20930 -15.93924 -15.91744 -15.58972 -15.14236 -15.00828 -14.71566 -14.41240 -13.99802 -13.65743 -13.48103 -13.14270 -12.68767 -12.65224 -12.36153 -11.99564 -11.91771 -11.88086 -11.54708 -11.37980 -11.22569 -10.99197 -10.87952 -10.81926 -10.73460 -10.63113 -10.56652 -10.40707 -10.30563 -9.39711 -8.98066 -8.71553 -8.28341 -7.83609 -6.15277 -4.22232 3.25804 3.30510 3.32045 3.43394 3.87991 4.32338 4.34809 4.44010 4.54262 4.65987 4.96095 5.09444 5.13612 5.20513 5.25182 5.33201 5.34770 5.39058 5.47237 5.51181 5.52619 5.63475 5.65542 5.71943 5.75598 5.79900 5.82983 5.93692 5.99118 6.09935 6.12028 6.18360 6.32922 6.45040 7.06284 7.34741 7.46961 7.50813 7.54565 7.69423 7.99084 8.66560 8.80710 9.15408 9.44485 10.94907 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.052848 B = 0.002861 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.694289 B = 9783.911551 C =10074.169067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.084 4.084 4 H 0.078 0.922 5 C -0.118 4.118 6 C -0.117 4.117 7 C 0.085 3.915 8 H 0.040 0.960 9 N -0.665 5.665 10 C 0.038 3.962 11 C 0.496 3.504 12 O -0.544 6.544 13 N -0.715 5.715 14 C 0.251 3.749 15 C -0.544 4.544 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.089 4.089 24 H 0.068 0.932 25 C -0.148 4.148 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.353 0.647 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.389 0.611 39 H 0.026 0.974 40 H 0.025 0.975 41 H 0.266 0.734 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.289 -18.298 -6.421 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.103 4.103 4 H 0.097 0.903 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.025 4.025 8 H 0.058 0.942 9 N -0.301 5.301 10 C -0.095 4.095 11 C 0.280 3.720 12 O -0.422 6.422 13 N -0.365 5.365 14 C 0.130 3.870 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.108 4.108 24 H 0.087 0.913 25 C -0.205 4.205 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.176 0.824 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.222 0.778 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.801 -17.752 -5.326 23.718 hybrid contribution 1.460 0.167 -1.338 1.987 sum -13.341 -17.585 -6.664 23.057 Atomic orbital electron populations 1.21778 0.95998 1.01259 1.01910 1.21570 0.95761 0.96357 1.01705 1.22060 0.94614 0.95630 0.98000 0.90322 1.22522 0.98768 0.97407 0.96865 1.22444 0.94401 0.98652 1.00007 1.22175 0.95239 0.91097 0.93971 0.94189 1.60500 1.33482 1.20842 1.15257 1.21879 0.96586 0.95333 0.95699 1.20387 0.79990 0.82625 0.88959 1.90657 1.63225 1.73542 1.14810 1.46449 1.47236 1.31846 1.10921 1.19073 0.91607 0.85741 0.90545 1.21197 1.29249 1.14356 0.93403 0.91988 1.24960 0.96535 0.97416 0.95142 1.69965 1.40573 1.32134 1.09614 0.86472 0.80047 0.80273 0.80089 1.20063 1.21071 1.20095 1.21877 0.95578 0.97232 0.96106 0.91318 1.21815 1.00723 1.03108 0.94897 0.92664 0.93116 0.92766 0.92180 0.92147 0.91825 0.91649 0.92219 0.90156 0.82419 0.93116 0.88769 0.77839 0.95564 0.95662 0.92398 0.93079 0.92988 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.79 37.16 0.36 -0.67 16 2 C -0.12 -0.87 5.28 -26.73 -0.14 -1.01 16 3 C -0.08 -0.74 2.39 -88.96 -0.21 -0.95 16 4 H 0.08 0.76 7.86 -51.93 -0.41 0.36 16 5 C -0.12 -1.00 5.67 -24.74 -0.14 -1.14 16 6 C -0.12 -1.19 6.01 -25.08 -0.15 -1.34 16 7 C 0.09 0.93 3.21 -66.59 -0.21 0.72 16 8 H 0.04 0.43 7.97 -51.93 -0.41 0.01 16 9 N -0.67 -9.24 4.84 -106.80 -0.52 -9.76 16 10 C 0.04 0.55 5.99 -4.98 -0.03 0.52 16 11 C 0.50 10.01 7.87 -10.99 -0.09 9.92 16 12 O -0.54 -13.25 16.20 5.55 0.09 -13.16 16 13 N -0.72 -15.21 5.55 -61.47 -0.34 -15.55 16 14 C 0.25 6.75 5.43 -5.20 -0.03 6.72 16 15 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 19 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.09 -0.86 3.07 -89.50 -0.27 -1.14 16 24 H 0.07 0.62 7.84 -51.93 -0.41 0.21 16 25 C -0.15 -1.57 7.76 37.16 0.29 -1.28 16 26 H 0.05 0.37 7.55 -51.93 -0.39 -0.03 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.43 8.02 -51.93 -0.42 0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.50 7.96 -51.93 -0.41 0.09 16 32 H 0.06 0.53 8.05 -51.92 -0.42 0.11 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 35 H 0.35 5.14 5.88 -39.30 -0.23 4.91 16 36 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.09 1.24 7.78 -51.93 -0.40 0.83 16 38 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.56 7.17 -51.93 -0.37 0.19 16 44 H 0.08 1.00 7.36 -51.93 -0.38 0.62 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -31.31 348.74 -8.77 -40.08 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.93 Total: 5.96 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.04 Total: -3.19 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.12 Total: -50.89 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.31 -8.77 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251750249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.393 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds