Wall clock time and date at job start Mon Mar 30 2020 05:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47007 * 2 1 4 4 H 1.08994 * 110.67485 * 56.77753 * 3 2 1 5 5 C 1.54882 * 110.75512 * 293.54213 * 3 2 1 6 6 C 1.54269 * 104.19831 * 203.74491 * 5 3 2 7 7 C 1.53873 * 106.59646 * 23.61137 * 6 5 3 8 8 H 1.09002 * 110.03070 * 240.71534 * 7 6 5 9 9 N 1.46900 * 110.03223 * 119.33513 * 7 6 5 10 10 C 1.46900 * 111.00006 * 87.09116 * 9 7 6 11 11 C 1.50705 * 109.46865 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99878 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99921 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00173 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47271 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99956 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00021 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99434 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00042 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.46990 * 90.00115 * 19 17 15 21 21 H 1.48501 * 109.47056 * 210.00284 * 19 17 15 22 22 H 1.48504 * 109.47088 * 330.00155 * 19 17 15 23 23 C 1.54273 * 106.59758 * 0.02562 * 7 6 5 24 24 H 1.09001 * 110.48533 * 95.07157 * 23 7 6 25 25 C 1.52997 * 110.48458 * 217.71181 * 23 7 6 26 26 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47289 * 300.00056 * 1 2 3 28 28 H 1.09000 * 109.46933 * 60.00046 * 1 2 3 29 29 H 1.08993 * 109.47292 * 239.99629 * 2 1 3 30 30 H 1.09004 * 109.46962 * 119.99433 * 2 1 3 31 31 H 1.09000 * 110.49014 * 85.06577 * 5 3 2 32 32 H 1.09001 * 110.48811 * 322.42590 * 5 3 2 33 33 H 1.08996 * 110.03023 * 264.32581 * 6 5 3 34 34 H 1.09002 * 110.03472 * 142.89742 * 6 5 3 35 35 H 1.00899 * 110.99752 * 323.13268 * 9 7 6 36 36 H 1.08993 * 109.46980 * 299.99480 * 10 9 7 37 37 H 1.08992 * 109.47101 * 60.00252 * 10 9 7 38 38 H 0.97009 * 120.00035 * 359.97438 * 13 11 10 39 39 H 1.08993 * 109.47024 * 300.00088 * 14 13 11 40 40 H 1.09001 * 109.46900 * 59.99894 * 14 13 11 41 41 H 0.97009 * 119.99538 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.47337 * 58.54545 * 25 23 7 43 43 H 1.08993 * 109.47548 * 178.54931 * 25 23 7 44 44 H 1.09008 * 109.47251 * 298.55200 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6414 1.9916 0.8531 5 6 1.6775 2.1528 -1.3278 6 6 2.7188 3.2847 -1.4479 7 6 3.9338 2.8551 -0.6072 8 1 4.1102 3.5771 0.1901 9 7 5.1243 2.7483 -1.4612 10 6 5.8075 4.0436 -1.5764 11 6 7.0212 3.8947 -2.4574 12 8 7.2907 2.8156 -2.9411 13 7 7.8076 4.9604 -2.7067 14 6 8.9871 4.8158 -3.5635 15 6 9.6881 6.1446 -3.6816 16 1 9.2942 7.0103 -3.1700 17 6 10.8318 6.2554 -4.4437 18 7 11.4438 7.4150 -4.5463 19 14 11.5120 4.7585 -5.3304 20 1 10.9145 4.6731 -6.6872 21 1 12.9875 4.8797 -5.4459 22 1 11.1745 3.5328 -4.5629 23 6 3.5887 1.4769 -0.0060 24 1 3.9863 0.6775 -0.6313 25 6 4.1317 1.3635 1.4199 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.6698 2.5654 -1.2771 32 1 1.7661 1.4622 -2.1664 33 1 2.3055 4.2151 -1.0587 34 1 3.0122 3.4130 -2.4898 35 1 4.8850 2.3834 -2.3710 36 1 5.1281 4.7750 -2.0139 37 1 6.1164 4.3807 -0.5870 38 1 7.5923 5.8233 -2.3195 39 1 9.6662 4.0839 -3.1264 40 1 8.6782 4.4792 -4.5532 41 1 12.2487 7.4928 -5.0822 42 1 3.7077 2.1577 2.0344 43 1 3.8568 0.3950 1.8375 44 1 5.2176 1.4572 1.4037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251750251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:26 Heat of formation + Delta-G solvation = -67.705596 kcal Electronic energy + Delta-G solvation = -20447.749560 eV Core-core repulsion = 17398.517129 eV Total energy + Delta-G solvation = -3049.232431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.68090 -38.70611 -35.26614 -34.21475 -32.46033 -32.25365 -31.43138 -28.70507 -27.13896 -25.79708 -24.09689 -22.75978 -21.86016 -20.25046 -20.02591 -19.67752 -17.28758 -16.14819 -16.03632 -15.39190 -15.21986 -14.94894 -14.64288 -14.39170 -13.89265 -13.72952 -13.56271 -13.48724 -12.91932 -12.67208 -12.56306 -12.42602 -12.22220 -12.02900 -11.82362 -11.50118 -11.34305 -11.10432 -10.99739 -10.82416 -10.75286 -10.69738 -10.58078 -10.42480 -9.96416 -9.49065 -9.16188 -8.77271 -8.33888 -8.11016 -6.21263 -4.23393 3.25417 3.28780 3.33946 3.43181 3.73391 4.26053 4.34045 4.36541 4.46768 4.67568 4.91527 4.95339 5.01255 5.14058 5.20438 5.27832 5.28963 5.34609 5.36625 5.44238 5.46400 5.49588 5.55998 5.61840 5.68569 5.72871 5.77567 5.87869 5.92162 6.00248 6.01856 6.07518 6.19099 6.34596 6.79940 7.02503 7.08789 7.25585 7.38855 7.42731 8.15263 8.53409 8.75986 8.96991 9.39157 10.90671 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044404 B = 0.002957 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.427168 B = 9467.470760 C = 9542.907161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.090 4.090 4 H 0.074 0.926 5 C -0.116 4.116 6 C -0.157 4.157 7 C 0.087 3.913 8 H 0.080 0.920 9 N -0.665 5.665 10 C 0.040 3.960 11 C 0.498 3.502 12 O -0.547 6.547 13 N -0.708 5.708 14 C 0.221 3.779 15 C -0.543 4.543 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.079 4.079 24 H 0.083 0.917 25 C -0.140 4.140 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.350 0.650 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.396 0.604 39 H 0.025 0.975 40 H 0.019 0.981 41 H 0.267 0.733 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.539 -10.410 10.457 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.109 4.109 4 H 0.093 0.907 5 C -0.154 4.154 6 C -0.197 4.197 7 C -0.023 4.023 8 H 0.098 0.902 9 N -0.297 5.297 10 C -0.092 4.092 11 C 0.282 3.718 12 O -0.425 6.425 13 N -0.357 5.357 14 C 0.099 3.901 15 C -0.581 4.581 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.530 5.530 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.098 4.098 24 H 0.102 0.898 25 C -0.197 4.197 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.171 0.829 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.229 0.771 39 H 0.043 0.957 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.724 -11.297 10.507 25.836 hybrid contribution -0.223 0.441 -0.956 1.076 sum -20.947 -10.855 9.551 25.453 Atomic orbital electron populations 1.21783 0.96098 1.01341 1.01731 1.21512 0.95564 0.96176 1.02055 1.22238 0.95188 0.95750 0.97705 0.90724 1.22361 0.98218 0.97145 0.97627 1.22955 0.97366 0.98931 1.00404 1.22344 0.87592 0.97179 0.95196 0.90208 1.60226 1.25559 1.24454 1.19427 1.21844 0.94768 0.91973 1.00627 1.20453 0.84637 0.84766 0.81897 1.90654 1.72961 1.26591 1.52259 1.46171 1.27883 1.11119 1.50556 1.19467 0.82948 0.98114 0.89554 1.21101 1.10422 0.94319 1.32274 0.90281 1.24808 0.96064 0.96130 0.95696 1.69888 1.19293 1.23874 1.39961 0.86804 0.78358 0.83738 0.80719 1.19888 1.20903 1.18457 1.21982 0.93701 0.97228 0.96892 0.89830 1.21749 1.01563 1.00995 0.95420 0.93031 0.92942 0.92691 0.91914 0.92006 0.91968 0.91567 0.91723 0.91716 0.82924 0.92759 0.88525 0.77100 0.95709 0.96286 0.92276 0.93169 0.92993 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.76 37.16 0.36 -0.62 16 2 C -0.12 -0.84 5.44 -26.73 -0.15 -0.98 16 3 C -0.09 -0.70 2.35 -88.62 -0.21 -0.91 16 4 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 5 C -0.12 -0.93 5.47 -25.07 -0.14 -1.06 16 6 C -0.16 -1.41 6.40 -25.61 -0.16 -1.57 16 7 C 0.09 0.88 2.80 -66.59 -0.19 0.70 16 8 H 0.08 0.79 7.52 -51.93 -0.39 0.40 16 9 N -0.66 -8.72 5.83 -106.81 -0.62 -9.34 16 10 C 0.04 0.55 5.99 -4.97 -0.03 0.52 16 11 C 0.50 9.47 7.87 -10.99 -0.09 9.39 16 12 O -0.55 -12.54 16.20 5.55 0.09 -12.45 16 13 N -0.71 -14.36 5.55 -61.47 -0.34 -14.70 16 14 C 0.22 5.50 4.50 -5.19 -0.02 5.48 16 15 C -0.54 -14.99 9.83 -34.44 -0.34 -15.33 16 16 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 18 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 19 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 23 C -0.08 -0.74 2.61 -88.95 -0.23 -0.97 16 24 H 0.08 0.91 7.96 -51.93 -0.41 0.49 16 25 C -0.14 -1.26 9.11 37.16 0.34 -0.92 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.35 7.41 -51.93 -0.38 -0.03 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.44 8.00 -51.93 -0.42 0.03 16 31 H 0.06 0.45 8.02 -51.93 -0.42 0.04 16 32 H 0.07 0.55 8.01 -51.93 -0.42 0.14 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.63 7.58 -51.93 -0.39 0.24 16 35 H 0.35 4.84 7.87 -39.29 -0.31 4.53 16 36 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 37 H 0.10 1.18 8.07 -51.93 -0.42 0.76 16 38 H 0.40 7.01 8.32 -40.82 -0.34 6.67 16 39 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 40 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.42 8.00 -51.93 -0.42 0.01 16 44 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -31.38 350.01 -8.48 -39.86 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -8.03 Total: 4.45 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -0.95 Total: -4.20 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.19 Total: -49.89 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.38 -8.48 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251750251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.849 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds