Wall clock time and date at job start Mon Mar 30 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47227 * 2 1 4 4 H 1.09001 * 109.47382 * 181.76866 * 3 2 1 5 5 C 1.50697 * 109.47252 * 61.77114 * 3 2 1 6 6 H 1.07997 * 120.00618 * 244.98620 * 5 3 2 7 7 C 1.37885 * 120.00059 * 64.97834 * 5 3 2 8 8 N 1.31511 * 119.99674 * 9.68490 * 7 5 3 9 9 Si 1.86803 * 120.00225 * 189.68139 * 7 5 3 10 10 H 1.48497 * 109.46763 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.47004 * 300.00280 * 9 7 5 12 12 H 1.48497 * 109.46831 * 60.00288 * 9 7 5 13 13 N 1.46897 * 109.47063 * 301.77313 * 3 2 1 14 14 C 1.46907 * 110.99998 * 273.98370 * 13 3 2 15 15 C 1.52999 * 109.47295 * 184.39089 * 14 13 3 16 16 H 1.09006 * 109.17768 * 59.99902 * 15 14 13 17 17 C 1.53773 * 109.18564 * 179.29986 * 15 14 13 18 18 N 1.45375 * 107.50708 * 66.31655 * 17 15 14 19 19 C 1.46113 * 118.13025 * 182.77607 * 18 17 15 20 20 C 1.54903 * 105.80712 * 207.59586 * 19 18 17 21 21 C 1.55432 * 104.96345 * 4.05657 * 20 19 18 22 22 C 1.48874 * 109.13328 * 62.55924 * 18 17 15 23 23 H 1.08998 * 111.14136 * 53.52717 * 22 18 17 24 24 C 1.52325 * 106.88846 * 292.32561 * 22 18 17 25 25 O 1.42655 * 109.18109 * 300.70256 * 15 14 13 26 26 H 1.08999 * 109.46957 * 304.51765 * 1 2 3 27 27 H 1.08993 * 109.47006 * 64.52255 * 1 2 3 28 28 H 1.08997 * 109.46749 * 184.51987 * 1 2 3 29 29 H 1.09005 * 109.47384 * 239.99975 * 2 1 3 30 30 H 1.09002 * 109.47290 * 120.00104 * 2 1 3 31 31 H 0.97005 * 120.00511 * 356.99124 * 8 7 5 32 32 H 1.00908 * 111.00085 * 150.03376 * 13 3 2 33 33 H 1.08996 * 109.46782 * 304.39192 * 14 13 3 34 34 H 1.08999 * 109.46774 * 64.38872 * 14 13 3 35 35 H 1.08996 * 109.86514 * 185.84495 * 17 15 14 36 36 H 1.09007 * 109.86085 * 306.87162 * 17 15 14 37 37 H 1.08998 * 110.18381 * 326.68266 * 19 18 17 38 38 H 1.09001 * 110.18082 * 88.50950 * 19 18 17 39 39 H 1.08998 * 110.34390 * 122.92766 * 20 19 18 40 40 H 1.09006 * 110.34536 * 245.08117 * 20 19 18 41 41 H 1.09005 * 110.93219 * 264.14619 * 21 20 19 42 42 H 1.08997 * 110.93401 * 140.47436 * 21 20 19 43 43 H 1.08994 * 109.91288 * 301.83889 * 24 22 18 44 44 H 1.08994 * 109.90773 * 180.67646 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 -0.0317 5 6 1.5739 2.1401 1.2518 6 1 0.8859 2.9698 1.1834 7 6 2.0257 1.7191 2.4846 8 7 3.0021 0.8416 2.5625 9 14 1.2508 2.3951 4.0441 10 1 1.9109 1.7885 5.2279 11 1 1.4228 3.8696 4.0834 12 1 -0.1969 2.0650 4.0607 13 7 1.5157 2.1472 -1.1774 14 6 2.3787 1.9329 -2.3468 15 6 1.8631 2.7675 -3.5210 16 1 1.8768 3.8217 -3.2443 17 6 2.7810 2.5519 -4.7357 18 7 2.6325 1.1681 -5.1559 19 6 3.4557 0.6931 -6.2657 20 6 2.6502 -0.4520 -6.9286 21 6 1.2973 -0.4858 -6.1641 22 6 1.2250 0.9358 -5.5816 23 1 0.9168 1.6617 -6.3339 24 6 0.3608 1.0462 -4.3320 25 8 0.5235 2.3787 -3.8198 26 1 -0.3633 0.5823 0.8467 27 1 -0.3633 0.4420 -0.9277 28 1 -0.3633 -1.0245 0.0810 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.3751 0.4578 1.7534 32 1 1.4010 3.1318 -0.9882 33 1 3.3980 2.2349 -2.1063 34 1 2.3670 0.8774 -2.6184 35 1 2.4859 3.2187 -5.5459 36 1 3.8169 2.7436 -4.4558 37 1 3.6233 1.4981 -6.9811 38 1 4.4081 0.3161 -5.8929 39 1 2.4837 -0.2365 -7.9840 40 1 3.1754 -1.4003 -6.8145 41 1 1.3175 -1.2317 -5.3695 42 1 0.4682 -0.6692 -6.8475 43 1 0.6889 0.3200 -3.5884 44 1 -0.6844 0.8716 -4.5870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252552066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:29 Heat of formation + Delta-G solvation = -42.041790 kcal Electronic energy + Delta-G solvation = -22057.805677 eV Core-core repulsion = 19009.686112 eV Total energy + Delta-G solvation = -3048.119565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31210 -37.21153 -35.96866 -33.33567 -32.23800 -30.77021 -30.14756 -28.61544 -26.06539 -24.62960 -23.75006 -23.19423 -21.78561 -21.05268 -19.47823 -19.13167 -17.00708 -16.50412 -15.93295 -15.54704 -15.40260 -14.55224 -14.20995 -14.03825 -13.67524 -13.59020 -13.35258 -13.11566 -12.85605 -12.60132 -12.05082 -11.90270 -11.71672 -11.56707 -11.26701 -11.08722 -10.96748 -10.92643 -10.78355 -10.73372 -10.11913 -10.06873 -10.00561 -9.88072 -9.64247 -9.26435 -8.50842 -8.33686 -8.15755 -7.19392 -6.30277 -3.99439 3.46593 3.49886 3.67487 3.75187 4.02132 4.40350 4.56331 4.61118 4.72596 4.89849 5.04101 5.16249 5.22545 5.32411 5.38673 5.43218 5.52878 5.56906 5.64998 5.69423 5.72720 5.78627 5.82718 5.94772 6.01956 6.13200 6.29076 6.38275 6.52509 6.62358 6.71837 6.78569 7.06935 7.12206 7.16022 7.34378 7.52026 7.60404 7.63740 7.99853 8.21548 8.62916 8.69924 8.95001 9.71431 11.07086 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.004529 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.242060 B = 6181.577807 C = 6254.274528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.103 4.103 3 C 0.205 3.795 4 H -0.011 1.011 5 C -0.594 4.594 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 1.065 2.935 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.670 5.670 14 C 0.040 3.960 15 C 0.102 3.898 16 H 0.097 0.903 17 C 0.034 3.966 18 N -0.535 5.535 19 C 0.052 3.948 20 C -0.126 4.126 21 C -0.112 4.112 22 C 0.029 3.971 23 H 0.058 0.942 24 C 0.080 3.920 25 O -0.367 6.367 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.015 0.985 29 H 0.017 0.983 30 H 0.055 0.945 31 H 0.270 0.730 32 H 0.330 0.670 33 H 0.019 0.981 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.082 0.918 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 -0.498 -18.494 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.142 4.142 3 C 0.097 3.903 4 H 0.006 0.994 5 C -0.632 4.632 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.547 5.547 9 Si 0.894 3.106 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.301 5.301 14 C -0.090 4.090 15 C 0.043 3.957 16 H 0.115 0.885 17 C -0.095 4.095 18 N -0.261 5.261 19 C -0.076 4.076 20 C -0.164 4.164 21 C -0.151 4.151 22 C -0.079 4.079 23 H 0.076 0.924 24 C 0.003 3.997 25 O -0.284 6.284 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.148 0.852 33 H 0.038 0.962 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.790 -1.183 -16.531 16.670 hybrid contribution 0.968 0.934 -2.264 2.633 sum -0.822 -0.249 -18.795 18.815 Atomic orbital electron populations 1.21415 0.96524 0.97591 1.02055 1.21458 0.96216 0.98385 0.98103 1.19217 0.91955 0.91320 0.87810 0.99357 1.21973 1.30954 1.18444 0.91840 0.92902 1.25692 0.94822 0.96126 1.01559 1.70793 1.22188 1.28984 1.32767 0.83594 0.75798 0.75572 0.75620 1.20967 1.21647 1.21365 1.60521 1.49273 1.15701 1.04556 1.22431 0.94009 1.00953 0.91621 1.22300 0.82097 0.98858 0.92426 0.88483 1.22624 1.01201 0.88048 0.97625 1.62650 1.04223 1.21480 1.37766 1.22481 0.97309 0.96506 0.91290 1.22644 0.96111 0.98837 0.98852 1.22291 0.96837 0.96221 0.99710 1.23334 0.90156 0.97107 0.97340 0.92420 1.22480 0.98563 0.85907 0.92798 1.87909 1.25913 1.30335 1.84291 0.92289 0.93186 0.96611 0.96446 0.92609 0.91873 0.85242 0.96247 0.90441 0.94441 0.89914 0.94663 0.90426 0.91643 0.90878 0.90188 0.90994 0.91223 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.52 37.16 0.35 -2.32 16 2 C -0.10 -2.50 5.49 -26.73 -0.15 -2.65 16 3 C 0.21 5.18 1.93 -68.87 -0.13 5.05 16 4 H -0.01 -0.31 7.08 -51.93 -0.37 -0.67 16 5 C -0.59 -16.39 7.24 -34.44 -0.25 -16.64 16 6 H 0.05 1.47 7.67 -52.49 -0.40 1.07 16 7 C 0.02 0.64 5.18 -17.82 -0.09 0.55 16 8 N -0.91 -27.33 13.04 55.43 0.72 -26.61 16 9 Si 1.07 25.29 29.92 -169.99 -5.09 20.21 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -14.46 5.43 -107.95 -0.59 -15.05 16 14 C 0.04 0.74 4.68 -3.82 -0.02 0.72 16 15 C 0.10 1.57 3.40 -26.33 -0.09 1.48 16 16 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 17 C 0.03 0.44 5.47 -4.24 -0.02 0.42 16 18 N -0.54 -6.86 4.05 -225.14 -0.91 -7.78 16 19 C 0.05 0.55 6.89 -3.25 -0.02 0.52 16 20 C -0.13 -1.13 6.99 -24.44 -0.17 -1.30 16 21 C -0.11 -1.11 6.63 -25.03 -0.17 -1.27 16 22 C 0.03 0.34 2.79 -66.55 -0.19 0.16 16 23 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 24 C 0.08 1.12 6.31 36.81 0.23 1.35 16 25 O -0.37 -6.03 10.33 -35.23 -0.36 -6.39 16 26 H 0.06 1.44 7.12 -51.93 -0.37 1.07 16 27 H 0.05 1.09 7.71 -51.93 -0.40 0.69 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.02 0.39 7.65 -51.93 -0.40 -0.01 16 30 H 0.06 1.48 6.37 -51.93 -0.33 1.15 16 31 H 0.27 8.13 6.03 -40.82 -0.25 7.88 16 32 H 0.33 7.20 8.17 -39.29 -0.32 6.87 16 33 H 0.02 0.38 7.95 -51.93 -0.41 -0.04 16 34 H 0.08 1.52 5.97 -51.93 -0.31 1.21 16 35 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.08 1.03 8.14 -51.92 -0.42 0.60 16 37 H 0.04 0.35 8.07 -51.93 -0.42 -0.07 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.13 6.90 -51.93 -0.36 0.77 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -29.94 332.69 -9.69 -39.63 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.77 Total: 4.90 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.71 Total: -13.93 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.78 Total: -49.43 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.36 Total: -6.39 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.09 Total: 20.21 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.94 -9.69 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252552066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.409 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds