Wall clock time and date at job start Mon Mar 30 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47227 * 2 1 4 4 H 1.09001 * 109.47382 * 181.76866 * 3 2 1 5 5 C 1.50697 * 109.47252 * 61.77114 * 3 2 1 6 6 H 1.07997 * 120.00618 * 244.98620 * 5 3 2 7 7 C 1.37885 * 120.00059 * 64.97834 * 5 3 2 8 8 N 1.31511 * 119.99674 * 9.68490 * 7 5 3 9 9 Si 1.86803 * 120.00225 * 189.68139 * 7 5 3 10 10 H 1.48497 * 109.46763 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.47004 * 300.00280 * 9 7 5 12 12 H 1.48497 * 109.46831 * 60.00288 * 9 7 5 13 13 N 1.46897 * 109.47063 * 301.77313 * 3 2 1 14 14 C 1.46907 * 110.99998 * 273.98370 * 13 3 2 15 15 C 1.52999 * 109.47295 * 184.39089 * 14 13 3 16 16 H 1.09006 * 109.17768 * 59.99902 * 15 14 13 17 17 C 1.53773 * 109.18564 * 179.29986 * 15 14 13 18 18 N 1.45375 * 107.50708 * 66.31655 * 17 15 14 19 19 C 1.46113 * 118.13025 * 182.77607 * 18 17 15 20 20 C 1.54903 * 105.80712 * 207.59586 * 19 18 17 21 21 C 1.55432 * 104.96345 * 4.05657 * 20 19 18 22 22 C 1.48874 * 109.13328 * 62.55924 * 18 17 15 23 23 H 1.08998 * 111.14136 * 53.52717 * 22 18 17 24 24 C 1.52325 * 106.88846 * 292.32561 * 22 18 17 25 25 O 1.42655 * 109.18109 * 300.70256 * 15 14 13 26 26 H 1.08999 * 109.46957 * 304.51765 * 1 2 3 27 27 H 1.08993 * 109.47006 * 64.52255 * 1 2 3 28 28 H 1.08997 * 109.46749 * 184.51987 * 1 2 3 29 29 H 1.09005 * 109.47384 * 239.99975 * 2 1 3 30 30 H 1.09002 * 109.47290 * 120.00104 * 2 1 3 31 31 H 0.97005 * 120.00511 * 356.99124 * 8 7 5 32 32 H 1.00908 * 111.00085 * 150.03376 * 13 3 2 33 33 H 1.08996 * 109.46782 * 304.39192 * 14 13 3 34 34 H 1.08999 * 109.46774 * 64.38872 * 14 13 3 35 35 H 1.08996 * 109.86514 * 185.84495 * 17 15 14 36 36 H 1.09007 * 109.86085 * 306.87162 * 17 15 14 37 37 H 1.08998 * 110.18381 * 326.68266 * 19 18 17 38 38 H 1.09001 * 110.18082 * 88.50950 * 19 18 17 39 39 H 1.08998 * 110.34390 * 122.92766 * 20 19 18 40 40 H 1.09006 * 110.34536 * 245.08117 * 20 19 18 41 41 H 1.09005 * 110.93219 * 264.14619 * 21 20 19 42 42 H 1.08997 * 110.93401 * 140.47436 * 21 20 19 43 43 H 1.08994 * 109.91288 * 301.83889 * 24 22 18 44 44 H 1.08994 * 109.90773 * 180.67646 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 -0.0317 5 6 1.5739 2.1401 1.2518 6 1 0.8859 2.9698 1.1834 7 6 2.0257 1.7191 2.4846 8 7 3.0021 0.8416 2.5625 9 14 1.2508 2.3951 4.0441 10 1 1.9109 1.7885 5.2279 11 1 1.4228 3.8696 4.0834 12 1 -0.1969 2.0650 4.0607 13 7 1.5157 2.1472 -1.1774 14 6 2.3787 1.9329 -2.3468 15 6 1.8631 2.7675 -3.5210 16 1 1.8768 3.8217 -3.2443 17 6 2.7810 2.5519 -4.7357 18 7 2.6325 1.1681 -5.1559 19 6 3.4557 0.6931 -6.2657 20 6 2.6502 -0.4520 -6.9286 21 6 1.2973 -0.4858 -6.1641 22 6 1.2250 0.9358 -5.5816 23 1 0.9168 1.6617 -6.3339 24 6 0.3608 1.0462 -4.3320 25 8 0.5235 2.3787 -3.8198 26 1 -0.3633 0.5823 0.8467 27 1 -0.3633 0.4420 -0.9277 28 1 -0.3633 -1.0245 0.0810 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.3751 0.4578 1.7534 32 1 1.4010 3.1318 -0.9882 33 1 3.3980 2.2349 -2.1063 34 1 2.3670 0.8774 -2.6184 35 1 2.4859 3.2187 -5.5459 36 1 3.8169 2.7436 -4.4558 37 1 3.6233 1.4981 -6.9811 38 1 4.4081 0.3161 -5.8929 39 1 2.4837 -0.2365 -7.9840 40 1 3.1754 -1.4003 -6.8145 41 1 1.3175 -1.2317 -5.3695 42 1 0.4682 -0.6692 -6.8475 43 1 0.6889 0.3200 -3.5884 44 1 -0.6844 0.8716 -4.5870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252552066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:29 Heat of formation + Delta-G solvation = -62.219254 kcal Electronic energy + Delta-G solvation = -22058.680637 eV Core-core repulsion = 19009.686112 eV Total energy + Delta-G solvation = -3048.994525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35995 -38.61173 -37.57953 -34.84033 -33.75340 -32.55012 -31.15016 -29.91098 -27.80246 -25.88959 -25.47349 -24.85557 -22.94598 -21.84083 -21.24826 -20.51407 -18.95104 -17.73752 -16.96292 -16.78238 -16.45245 -16.01712 -15.78800 -15.59529 -15.34503 -15.08552 -14.75319 -14.59794 -13.94435 -13.85714 -13.59932 -13.44092 -13.20830 -13.05382 -12.61474 -12.53282 -12.22337 -12.09845 -12.06389 -11.94956 -11.92128 -11.81302 -11.59614 -11.52277 -11.23579 -10.63650 -10.53324 -10.28684 -9.30384 -9.04353 -8.57206 -6.27053 1.54798 1.62650 1.81293 2.58533 2.74906 2.93543 3.23213 3.47465 3.59222 3.78240 3.85500 4.00195 4.15940 4.19748 4.23098 4.29628 4.41693 4.51191 4.55206 4.56800 4.60874 4.63940 4.69449 4.77837 4.84356 4.88247 4.97916 5.00781 5.05195 5.14752 5.20662 5.22165 5.28380 5.38944 5.55580 5.70953 5.86945 5.92817 6.11565 6.19987 6.33245 6.52993 6.64659 6.88225 7.52671 8.79958 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.004529 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.242060 B = 6181.577807 C = 6254.274528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.096 4.096 3 C 0.210 3.790 4 H -0.047 1.047 5 C -0.599 4.599 6 H 0.050 0.950 7 C -0.025 4.025 8 N -0.935 5.935 9 Si 1.111 2.889 10 H -0.287 1.287 11 H -0.272 1.272 12 H -0.272 1.272 13 N -0.664 5.664 14 C 0.049 3.951 15 C 0.107 3.893 16 H 0.104 0.896 17 C 0.042 3.958 18 N -0.557 5.557 19 C 0.049 3.951 20 C -0.121 4.121 21 C -0.110 4.110 22 C 0.034 3.966 23 H 0.064 0.936 24 C 0.077 3.923 25 O -0.384 6.384 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.026 0.974 30 H 0.029 0.971 31 H 0.256 0.744 32 H 0.329 0.671 33 H 0.009 0.991 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 -0.202 -20.109 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C 0.101 3.899 4 H -0.030 1.030 5 C -0.637 4.637 6 H 0.068 0.932 7 C -0.224 4.224 8 N -0.572 5.572 9 Si 0.933 3.067 10 H -0.213 1.213 11 H -0.198 1.198 12 H -0.197 1.197 13 N -0.294 5.294 14 C -0.081 4.081 15 C 0.049 3.951 16 H 0.122 0.878 17 C -0.087 4.087 18 N -0.283 5.283 19 C -0.078 4.078 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.074 4.074 23 H 0.082 0.918 24 C 0.000 4.000 25 O -0.302 6.302 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.146 0.854 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.062 0.938 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.850 -0.884 -18.186 18.429 hybrid contribution 1.311 0.825 -1.817 2.388 sum -1.538 -0.059 -20.002 20.061 Atomic orbital electron populations 1.21271 0.94787 0.98805 1.01394 1.21332 0.97570 0.97401 0.97176 1.19054 0.89800 0.92292 0.88752 1.02989 1.22236 1.30320 1.18248 0.92874 0.93188 1.27058 0.94502 0.95799 1.04999 1.70914 1.23742 1.30540 1.32036 0.83009 0.75680 0.75961 0.72030 1.21293 1.19761 1.19725 1.60472 1.49600 1.15258 1.04063 1.22384 0.93089 1.00979 0.91625 1.22251 0.82391 0.98355 0.92140 0.87838 1.22485 1.00638 0.88812 0.96788 1.62631 1.05143 1.21255 1.39295 1.22554 0.97079 0.97334 0.90845 1.22646 0.95163 0.98476 0.99563 1.22301 0.98281 0.94377 0.99799 1.23280 0.89214 0.98629 0.96288 0.91792 1.22579 1.00077 0.84210 0.93131 1.87880 1.26262 1.31495 1.84572 0.94306 0.92503 0.94236 0.95531 0.95274 0.93340 0.85370 0.97302 0.91638 0.93018 0.89580 0.93681 0.90795 0.89740 0.90300 0.91403 0.88847 0.93779 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.52 71.98 0.69 -4.01 16 2 C -0.10 -4.75 5.49 30.59 0.17 -4.58 16 3 C 0.21 10.89 1.93 44.17 0.09 10.97 16 4 H -0.05 -2.76 7.08 -2.39 -0.02 -2.77 16 5 C -0.60 -33.48 7.24 25.60 0.19 -33.29 16 6 H 0.05 2.78 7.67 -2.91 -0.02 2.76 16 7 C -0.02 -1.42 5.18 84.66 0.44 -0.98 16 8 N -0.93 -57.39 13.04 21.45 0.28 -57.11 16 9 Si 1.11 50.70 29.92 68.60 2.05 52.75 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.66 -29.02 5.43 -495.45 -2.69 -31.71 16 14 C 0.05 1.84 4.68 86.30 0.40 2.25 16 15 C 0.11 3.23 3.40 30.85 0.10 3.33 16 16 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 17 C 0.04 1.03 5.47 86.85 0.47 1.50 16 18 N -0.56 -13.49 4.05 -866.21 -3.51 -17.00 16 19 C 0.05 0.93 6.89 87.10 0.60 1.53 16 20 C -0.12 -1.83 6.99 32.08 0.22 -1.60 16 21 C -0.11 -1.90 6.63 31.70 0.21 -1.69 16 22 C 0.03 0.74 2.79 44.58 0.12 0.87 16 23 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 24 C 0.08 2.07 6.31 71.76 0.45 2.53 16 25 O -0.38 -12.22 10.33 -148.98 -1.54 -13.76 16 26 H 0.04 1.86 7.12 -2.39 -0.02 1.85 16 27 H 0.06 2.43 7.71 -2.39 -0.02 2.41 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.03 1.23 7.65 -2.38 -0.02 1.21 16 30 H 0.03 1.58 6.37 -2.39 -0.02 1.56 16 31 H 0.26 16.07 6.03 -92.70 -0.56 15.51 16 32 H 0.33 14.45 8.17 -89.69 -0.73 13.72 16 33 H 0.01 0.35 7.95 -2.39 -0.02 0.33 16 34 H 0.07 2.62 5.97 -2.39 -0.01 2.61 16 35 H 0.05 1.14 8.09 -2.39 -0.02 1.13 16 36 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.04 0.77 8.07 -2.39 -0.02 0.75 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.07 1.35 8.12 -2.38 -0.02 1.33 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 43 H 0.04 1.41 6.90 -2.39 -0.02 1.40 16 44 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -64.78 332.69 -0.81 -65.59 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.44 Total: 24.40 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 4.16 Total: -23.17 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -5.92 Total: -105.82 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -1.54 Total: -13.76 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.75 kcal Total: -64.78 -0.81 -65.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252552066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.371 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds