Wall clock time and date at job start Mon Mar 30 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46997 * 175.66766 * 3 2 1 5 5 C 1.50697 * 109.46993 * 55.65895 * 3 2 1 6 6 H 1.08003 * 120.00075 * 239.99636 * 5 3 2 7 7 C 1.37876 * 120.00258 * 60.00583 * 5 3 2 8 8 N 1.31520 * 119.99511 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00394 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46920 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47033 * 119.99780 * 9 7 5 12 12 H 1.48497 * 109.47226 * 240.00155 * 9 7 5 13 13 N 1.46898 * 109.46594 * 295.66151 * 3 2 1 14 14 C 1.46906 * 110.99945 * 273.94678 * 13 3 2 15 15 C 1.53007 * 109.46800 * 176.23227 * 14 13 3 16 16 H 1.08994 * 109.16085 * 304.99461 * 15 14 13 17 17 C 1.53759 * 109.16192 * 185.73826 * 15 14 13 18 18 N 1.45647 * 107.39212 * 185.30635 * 17 15 14 19 19 C 1.46897 * 117.34790 * 179.74174 * 18 17 15 20 20 C 1.55306 * 103.36405 * 197.49567 * 19 18 17 21 21 C 1.55092 * 104.90277 * 24.10557 * 20 19 18 22 22 C 1.48946 * 108.71738 * 62.79573 * 18 17 15 23 23 H 1.09000 * 110.33156 * 52.62323 * 22 18 17 24 24 C 1.52181 * 107.08706 * 292.01474 * 22 18 17 25 25 O 1.42639 * 109.16831 * 64.26176 * 15 14 13 26 26 H 1.09003 * 109.46828 * 185.26673 * 1 2 3 27 27 H 1.08998 * 109.47438 * 305.26511 * 1 2 3 28 28 H 1.09004 * 109.46934 * 65.26848 * 1 2 3 29 29 H 1.08993 * 109.47465 * 239.99342 * 2 1 3 30 30 H 1.09005 * 109.46929 * 119.99706 * 2 1 3 31 31 H 0.97006 * 119.99670 * 179.97438 * 8 7 5 32 32 H 1.00905 * 111.00127 * 37.90350 * 13 3 2 33 33 H 1.08999 * 109.46730 * 296.22951 * 14 13 3 34 34 H 1.08995 * 109.47147 * 56.23496 * 14 13 3 35 35 H 1.08996 * 109.87766 * 304.77783 * 17 15 14 36 36 H 1.08998 * 109.87582 * 65.76757 * 17 15 14 37 37 H 1.09004 * 110.64298 * 315.95922 * 19 18 17 38 38 H 1.09000 * 110.64384 * 79.02900 * 19 18 17 39 39 H 1.09004 * 110.35134 * 265.25513 * 20 19 18 40 40 H 1.08998 * 110.44729 * 143.01006 * 20 19 18 41 41 H 1.08993 * 110.51151 * 244.25114 * 21 20 19 42 42 H 1.09004 * 110.50836 * 121.54518 * 21 20 19 43 43 H 1.09000 * 109.91652 * 180.77334 * 24 22 18 44 44 H 1.08999 * 109.91939 * 301.87192 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1272 1.4435 0.0776 5 6 1.4518 2.1833 1.1731 6 1 0.8403 3.0581 1.0079 7 6 1.6943 1.7443 2.4575 8 7 2.4386 0.6789 2.6587 9 14 0.9658 2.6629 3.9117 10 1 0.1735 3.8190 3.4204 11 1 0.0842 1.7498 4.6826 12 1 2.0609 3.1506 4.7881 13 7 1.6377 2.1040 -1.2484 14 6 2.6138 1.8506 -2.3167 15 6 2.1151 2.4747 -3.6217 16 1 1.1174 2.0948 -3.8415 17 6 3.0671 2.0840 -4.7641 18 7 2.6321 2.7979 -5.9567 19 6 3.4027 2.5855 -7.1891 20 6 2.9864 3.7845 -8.0841 21 6 2.5146 4.8785 -7.0910 22 6 2.7630 4.2613 -5.7121 23 1 3.7693 4.4992 -5.3675 24 6 1.7303 4.6326 -4.6577 25 8 2.0539 3.8916 -3.4698 26 1 -0.3633 -1.0234 0.0943 27 1 -0.3634 0.5933 0.8390 28 1 -0.3633 0.4300 -0.9335 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 2.6096 0.3703 3.5623 32 1 0.7121 1.8157 -1.5284 33 1 3.5723 2.2930 -2.0454 34 1 2.7346 0.7757 -2.4509 35 1 4.0874 2.3723 -4.5112 36 1 3.0179 1.0088 -4.9361 37 1 4.4727 2.6134 -6.9829 38 1 3.1251 1.6415 -7.6580 39 1 2.1704 3.4972 -8.7472 40 1 3.8378 4.1406 -8.6639 41 1 1.4542 5.0888 -7.2301 42 1 3.1045 5.7867 -7.2149 43 1 1.7770 5.7021 -4.4526 44 1 0.7324 4.3644 -5.0047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252552068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:32 Heat of formation + Delta-G solvation = -37.912892 kcal Electronic energy + Delta-G solvation = -21439.566128 eV Core-core repulsion = 18391.625605 eV Total energy + Delta-G solvation = -3047.940522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24090 -37.21201 -36.06943 -33.39473 -32.23659 -30.86862 -30.05707 -28.59591 -26.24694 -24.65837 -24.01590 -23.06414 -21.28932 -21.05648 -20.19553 -19.19905 -16.57734 -16.10331 -16.03811 -15.50199 -15.35228 -14.72153 -14.64047 -14.19942 -13.80190 -13.60538 -13.25175 -12.87747 -12.61106 -12.56324 -12.24471 -12.11059 -11.70626 -11.54559 -11.33605 -11.26736 -11.00499 -10.86277 -10.74769 -10.59942 -10.45862 -10.21918 -9.91164 -9.64694 -9.50618 -9.40560 -8.89245 -8.55937 -8.27926 -7.06768 -5.90860 -3.91410 3.36484 3.44386 3.50486 3.72057 3.94496 4.35222 4.50338 4.56198 4.68347 4.91589 5.02998 5.15718 5.24205 5.30877 5.35833 5.40850 5.43648 5.57586 5.61762 5.66058 5.70767 5.76278 5.79397 5.89987 5.94238 6.01624 6.19446 6.39294 6.41299 6.49169 6.62470 6.66006 6.93566 6.99552 7.33157 7.34279 7.54804 7.60289 7.76246 7.98008 8.36658 8.65357 8.71675 9.15424 9.72043 11.16347 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036037 B = 0.003891 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.800228 B = 7193.945561 C = 7585.617186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.483 4.483 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.674 5.674 14 C 0.068 3.932 15 C 0.105 3.895 16 H 0.058 0.942 17 C 0.025 3.975 18 N -0.528 5.528 19 C 0.043 3.957 20 C -0.121 4.121 21 C -0.114 4.114 22 C 0.022 3.978 23 H 0.059 0.941 24 C 0.076 3.924 25 O -0.360 6.360 26 H 0.023 0.977 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.009 0.991 30 H 0.093 0.907 31 H 0.257 0.743 32 H 0.325 0.675 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 3.904 -19.619 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.186 4.186 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.305 5.305 14 C -0.062 4.062 15 C 0.046 3.954 16 H 0.076 0.924 17 C -0.104 4.104 18 N -0.253 5.253 19 C -0.085 4.085 20 C -0.159 4.159 21 C -0.152 4.152 22 C -0.086 4.086 23 H 0.077 0.923 24 C -0.001 4.001 25 O -0.278 6.278 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.028 0.972 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.143 0.857 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.836 4.291 -19.179 19.671 hybrid contribution 0.396 -0.624 0.454 0.867 sum 1.231 3.667 -18.725 19.120 Atomic orbital electron populations 1.21600 0.97713 0.98652 1.00784 1.22116 0.94990 1.01256 1.00207 1.19223 0.95812 0.88412 0.85911 0.95073 1.21135 1.30161 1.11304 0.89552 0.91890 1.24923 0.95647 0.95217 0.98764 1.69899 1.39112 1.24008 1.20855 0.86518 0.78866 0.79875 0.82634 1.19714 1.21322 1.21267 1.60759 1.03427 1.63072 1.03228 1.21904 0.98022 0.96226 0.90098 1.22219 0.97515 0.81823 0.93805 0.92407 1.22758 0.98098 0.99443 0.90109 1.63942 1.53249 1.04956 1.03133 1.22836 0.95616 0.99270 0.90814 1.22562 1.01043 0.94796 0.97472 1.22077 1.02156 0.97667 0.93280 1.23183 0.99765 0.89288 0.96392 0.92288 1.22489 0.96437 0.96434 0.84755 1.88092 1.90864 1.17359 1.31473 0.95801 0.91232 0.95385 0.97208 0.88854 0.93294 0.85691 0.91173 0.94965 0.93850 0.89792 0.94213 0.90181 0.90949 0.91426 0.90683 0.91148 0.88790 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.40 37.16 0.35 -2.46 16 2 C -0.15 -3.46 5.52 -26.73 -0.15 -3.61 16 3 C 0.21 5.41 2.33 -68.87 -0.16 5.24 16 4 H 0.03 0.87 7.83 -51.93 -0.41 0.47 16 5 C -0.48 -13.37 7.28 -34.44 -0.25 -13.62 16 6 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 7 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 8 N -0.90 -25.71 11.37 55.43 0.63 -25.08 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.67 -14.81 6.19 -107.95 -0.67 -15.48 16 14 C 0.07 1.26 5.12 -3.82 -0.02 1.24 16 15 C 0.11 1.68 3.01 -26.33 -0.08 1.60 16 16 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 17 C 0.02 0.33 5.36 -4.11 -0.02 0.31 16 18 N -0.53 -6.43 4.86 -224.46 -1.09 -7.52 16 19 C 0.04 0.42 6.74 -2.60 -0.02 0.40 16 20 C -0.12 -0.98 7.06 -24.40 -0.17 -1.15 16 21 C -0.11 -1.00 6.66 -25.57 -0.17 -1.17 16 22 C 0.02 0.26 2.64 -66.94 -0.18 0.08 16 23 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 24 C 0.08 0.99 6.65 36.74 0.24 1.24 16 25 O -0.36 -6.19 10.28 -35.23 -0.36 -6.55 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.65 6.89 -51.93 -0.36 1.29 16 28 H 0.03 0.54 6.61 -51.93 -0.34 0.20 16 29 H 0.01 0.20 7.39 -51.93 -0.38 -0.18 16 30 H 0.09 2.48 6.20 -51.93 -0.32 2.16 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.32 6.85 6.53 -39.29 -0.26 6.60 16 33 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 34 H 0.03 0.58 7.38 -51.93 -0.38 0.19 16 35 H 0.04 0.59 8.04 -51.93 -0.42 0.18 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.63 8.02 -51.93 -0.42 0.22 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -29.39 335.19 -10.08 -39.47 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.90 Total: 3.87 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.72 Total: -10.47 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -1.13 Total: -48.08 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.36 Total: -6.55 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.39 -10.08 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252552068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.554 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds