Wall clock time and date at job start Mon Mar 30 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.46861 * 2 1 4 4 H 1.08999 * 109.47491 * 305.00087 * 3 2 1 5 5 C 1.50707 * 109.46877 * 185.00088 * 3 2 1 6 6 H 1.07999 * 119.99956 * 239.99525 * 5 3 2 7 7 C 1.37879 * 119.99733 * 59.99946 * 5 3 2 8 8 N 1.31510 * 120.00236 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99882 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47018 * 60.00076 * 9 7 5 11 11 H 1.48494 * 109.47245 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47416 * 300.00435 * 9 7 5 13 13 N 1.46495 * 109.47269 * 65.00247 * 3 2 1 14 14 C 1.34772 * 120.00097 * 274.99658 * 13 3 2 15 15 O 1.21281 * 119.99918 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00044 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.45483 * 39.97551 * 16 14 13 18 18 C 1.53037 * 109.46466 * 280.00134 * 16 14 13 19 19 C 1.53114 * 109.31211 * 180.82548 * 18 16 14 20 20 H 1.09007 * 109.52681 * 297.73305 * 19 18 16 21 21 C 1.52995 * 109.52453 * 177.60639 * 19 18 16 22 22 C 1.53007 * 109.47425 * 175.00221 * 21 19 18 23 23 C 1.53125 * 109.16368 * 57.63311 * 19 18 16 24 24 C 1.53035 * 109.27580 * 302.35133 * 23 19 18 25 25 N 1.46840 * 109.52994 * 59.17458 * 24 23 19 26 26 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46987 * 299.99657 * 1 2 3 28 28 H 1.08993 * 109.47383 * 60.00286 * 1 2 3 29 29 H 1.09003 * 109.46604 * 240.00061 * 2 1 3 30 30 H 1.08999 * 109.47401 * 120.00425 * 2 1 3 31 31 H 0.97002 * 120.00086 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99801 * 95.00148 * 13 3 2 33 33 H 1.09002 * 109.50283 * 60.86365 * 18 16 14 34 34 H 1.09003 * 109.50113 * 300.78553 * 18 16 14 35 35 H 1.09005 * 109.46948 * 294.99641 * 21 19 18 36 36 H 1.09000 * 109.47387 * 54.99707 * 21 19 18 37 37 H 1.09000 * 109.47258 * 59.99406 * 22 21 19 38 38 H 1.08998 * 109.47150 * 179.97438 * 22 21 19 39 39 H 1.09005 * 109.46584 * 299.99643 * 22 21 19 40 40 H 1.09005 * 109.49488 * 62.28510 * 23 19 18 41 41 H 1.08998 * 109.50244 * 182.36576 * 23 19 18 42 42 H 1.09001 * 109.46056 * 179.19389 * 24 23 19 43 43 H 1.09003 * 109.46054 * 299.16555 * 24 23 19 44 44 H 1.00891 * 111.00536 * 174.15753 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0048 0.8812 -1.3820 10 1 6.5975 0.1472 -0.2350 11 1 6.3976 0.2177 -2.6510 12 1 6.4994 2.2814 -1.3822 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3396 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 1 0.8863 3.8916 3.0533 18 6 -0.4028 2.2789 3.6690 19 6 -0.8267 2.9680 4.9689 20 1 0.0246 3.4999 5.3938 21 6 -1.3231 1.9187 5.9656 22 6 -1.6287 2.5919 7.3052 23 6 -1.9520 3.9618 4.6672 24 6 -1.4676 4.9722 3.6249 25 7 -1.0745 4.2638 2.4002 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 1.8932 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8291 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9977 33 1 0.4270 1.6013 3.8701 34 1 -1.2436 1.7148 3.2652 35 1 -2.2285 1.4505 5.5794 36 1 -0.5537 1.1597 6.1075 37 1 -2.3980 3.3508 7.1633 38 1 -1.9827 1.8443 8.0151 39 1 -0.7232 3.0601 7.6914 40 1 -2.8173 3.4246 4.2788 41 1 -2.2294 4.4860 5.5817 42 1 -2.2712 5.6726 3.3973 43 1 -0.6108 5.5184 4.0193 44 1 -0.8414 4.9143 1.6651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253151213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:25 Heat of formation + Delta-G solvation = -64.016960 kcal Electronic energy + Delta-G solvation = -21608.871950 eV Core-core repulsion = 18559.799470 eV Total energy + Delta-G solvation = -3049.072480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.73924 -37.97897 -35.11257 -34.32250 -32.40834 -31.37574 -30.39250 -29.88956 -26.99792 -24.90004 -23.37734 -22.90676 -21.72708 -20.03794 -19.61939 -19.20777 -17.31031 -16.19246 -15.79224 -15.10098 -14.93825 -14.72260 -14.50357 -14.01726 -13.90291 -13.57313 -13.19357 -13.03031 -12.65058 -12.58714 -12.06129 -11.85324 -11.69854 -11.45640 -11.25093 -11.20034 -11.13670 -10.97664 -10.80929 -10.65778 -10.58123 -10.29501 -10.21641 -10.12360 -9.58249 -9.02787 -8.78150 -8.46843 -8.29244 -7.75298 -6.10556 -4.20114 3.25714 3.31273 3.32090 3.45111 3.89792 4.32834 4.49970 4.67285 4.71340 4.81953 5.12540 5.20025 5.21333 5.26358 5.31709 5.43326 5.50170 5.53674 5.64994 5.74442 5.80805 5.85407 5.92756 5.98504 6.07133 6.16823 6.21406 6.43732 6.43989 6.52072 6.71494 7.04324 7.09590 7.25989 7.41930 7.45503 7.51814 7.64887 7.78277 7.93870 8.21375 8.72809 8.81556 9.21669 9.47781 10.94603 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026599 B = 0.004354 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.401814 B = 6429.133389 C = 6556.168337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.710 5.710 14 C 0.502 3.498 15 O -0.531 6.531 16 C 0.072 3.928 17 H 0.050 0.950 18 C -0.100 4.100 19 C -0.087 4.087 20 H 0.066 0.934 21 C -0.119 4.119 22 C -0.152 4.152 23 C -0.113 4.113 24 C 0.060 3.940 25 N -0.667 5.667 26 H 0.021 0.979 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.386 0.614 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.026 0.974 44 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 5.532 15.571 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.359 5.359 14 C 0.285 3.715 15 O -0.408 6.408 16 C -0.041 4.041 17 H 0.068 0.932 18 C -0.138 4.138 19 C -0.106 4.106 20 H 0.085 0.915 21 C -0.157 4.157 22 C -0.210 4.210 23 C -0.151 4.151 24 C -0.070 4.070 25 N -0.300 5.300 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.218 0.782 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.298 4.915 14.736 17.611 hybrid contribution 2.123 0.592 0.338 2.230 sum -6.174 5.508 15.073 17.195 Atomic orbital electron populations 1.21836 0.98268 0.97953 1.01361 1.21924 0.92657 0.99834 1.02142 1.18747 0.94027 0.89175 0.81051 0.93422 1.21205 0.90807 1.39063 1.06250 0.92246 1.24880 0.98512 0.94834 0.95404 1.69886 1.35174 1.37552 1.09300 0.86534 0.84985 0.78271 0.77444 1.20186 1.21130 1.20243 1.46504 1.14592 1.56370 1.18394 1.20181 0.82665 0.79970 0.88647 1.90676 1.51067 1.58957 1.40093 1.21465 0.92715 0.95042 0.94887 0.93219 1.21565 1.02077 0.96783 0.93412 1.21227 0.98090 0.96282 0.94968 0.91513 1.21551 1.01387 0.97863 0.94857 1.21811 1.01460 1.00642 0.97046 1.21700 0.98664 0.97004 0.97716 1.21924 0.99157 0.95311 0.90566 1.59936 1.39574 1.22158 1.08304 0.95986 0.94091 0.93218 0.88411 0.95141 0.92527 0.78224 0.91133 0.90533 0.91832 0.91900 0.92583 0.92995 0.92917 0.91029 0.91650 0.90729 0.95577 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.75 11.29 55.43 0.63 -24.13 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.71 -14.62 5.02 -54.94 -0.28 -14.89 16 14 C 0.50 9.89 5.56 -10.99 -0.06 9.83 16 15 O -0.53 -12.48 13.66 5.56 0.08 -12.40 16 16 C 0.07 1.09 2.83 -68.87 -0.19 0.89 16 17 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 18 C -0.10 -1.33 4.64 -26.65 -0.12 -1.45 16 19 C -0.09 -0.91 2.25 -90.50 -0.20 -1.12 16 20 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.12 -1.11 5.41 -26.73 -0.14 -1.25 16 22 C -0.15 -1.20 9.68 37.16 0.36 -0.84 16 23 C -0.11 -1.15 5.08 -26.65 -0.14 -1.29 16 24 C 0.06 0.66 6.55 -3.84 -0.03 0.63 16 25 N -0.67 -9.57 6.10 -107.99 -0.66 -10.23 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.91 5.64 -51.93 -0.29 0.61 16 28 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.39 6.97 8.54 -40.82 -0.35 6.63 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.42 6.64 -51.93 -0.34 0.07 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.55 6.71 -51.93 -0.35 0.20 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.35 5.07 8.74 -39.30 -0.34 4.73 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -29.48 338.69 -8.88 -38.36 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.83 Total: 9.28 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.91 Total: -6.66 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.31 Total: -49.25 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.48 -8.88 -38.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253151213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.656 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds