Wall clock time and date at job start Mon Mar 30 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47220 * 2 1 4 4 H 1.09007 * 109.52295 * 55.12322 * 3 2 1 5 5 C 1.53113 * 109.52321 * 294.99891 * 3 2 1 6 6 C 1.53040 * 109.28226 * 182.37708 * 5 3 2 7 7 N 1.46849 * 109.52249 * 59.17591 * 6 5 3 8 8 C 1.46843 * 111.19747 * 298.26176 * 7 6 5 9 9 H 1.09005 * 109.46457 * 301.73379 * 8 7 6 10 10 C 1.50703 * 109.46173 * 181.75728 * 8 7 6 11 11 O 1.21278 * 119.99826 * 340.00052 * 10 8 7 12 12 N 1.34783 * 120.00065 * 159.99837 * 10 8 7 13 13 C 1.46499 * 119.99903 * 359.97438 * 12 10 8 14 14 C 1.46499 * 119.99826 * 180.02562 * 12 10 8 15 15 H 1.09002 * 109.47391 * 359.97438 * 14 12 10 16 16 C 1.53002 * 109.46799 * 240.00088 * 14 12 10 17 17 C 1.50701 * 109.46992 * 120.00001 * 14 12 10 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 14 12 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 14 12 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 C 1.53035 * 109.52478 * 61.74082 * 8 7 6 26 26 H 1.09007 * 109.47266 * 60.00161 * 1 2 3 27 27 H 1.09005 * 109.47468 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47760 * 300.00383 * 1 2 3 29 29 H 1.08991 * 109.47532 * 239.99754 * 2 1 3 30 30 H 1.09000 * 109.47124 * 119.99437 * 2 1 3 31 31 H 1.08994 * 109.50466 * 62.43401 * 5 3 2 32 32 H 1.09002 * 109.53665 * 302.33832 * 5 3 2 33 33 H 1.09002 * 109.45743 * 299.16374 * 6 5 3 34 34 H 1.08996 * 109.45795 * 179.18960 * 6 5 3 35 35 H 1.00905 * 111.00150 * 62.35753 * 7 6 5 36 36 H 1.08994 * 109.47057 * 269.99924 * 13 12 10 37 37 H 1.09006 * 109.46711 * 30.00085 * 13 12 10 38 38 H 1.08998 * 109.46853 * 149.99878 * 13 12 10 39 39 H 1.09002 * 109.47075 * 299.99543 * 16 14 12 40 40 H 1.08996 * 109.47407 * 60.00500 * 16 14 12 41 41 H 1.09000 * 109.46986 * 180.02562 * 16 14 12 42 42 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.50361 * 60.76554 * 25 8 7 44 44 H 1.09006 * 109.50306 * 180.87651 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6075 1.9818 0.8429 5 6 1.6355 2.1282 -1.3079 6 6 2.1989 3.5510 -1.3278 7 7 3.6620 3.5011 -1.2123 8 6 4.0739 2.8894 0.0575 9 1 3.6537 3.4575 0.8875 10 6 5.5778 2.8972 0.1541 11 8 6.2492 3.0163 -0.8488 12 7 6.1766 2.7719 1.3550 13 6 5.3655 2.6287 2.5666 14 6 7.6386 2.7801 1.4489 15 1 8.0661 2.8953 0.4529 16 6 8.1177 1.4616 2.0596 17 6 8.0795 3.9272 2.3211 18 1 7.3443 4.5842 2.7618 19 6 9.4216 4.1374 2.5574 20 7 10.3168 3.3371 2.0212 21 14 9.9680 5.5589 3.6390 22 1 8.7758 6.3040 4.1172 23 1 10.7225 5.0323 4.8047 24 1 10.8403 6.4702 2.8555 25 6 3.5665 1.4469 0.1187 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5137 0.8900 31 1 0.5485 2.1662 -1.3779 32 1 2.0351 1.5668 -2.1525 33 1 1.7876 4.1161 -0.4913 34 1 1.9248 4.0370 -2.2641 35 1 4.0703 3.0154 -1.9969 36 1 5.1523 3.6145 2.9797 37 1 4.4294 2.1277 2.3199 38 1 5.9115 2.0371 3.3015 39 1 7.6903 1.3460 3.0557 40 1 7.7988 0.6319 1.4288 41 1 9.2054 1.4678 2.1299 42 1 11.2610 3.4852 2.1871 43 1 3.9970 0.8746 -0.7030 44 1 3.8591 0.9982 1.0680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253153008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:14 Heat of formation + Delta-G solvation = -51.313463 kcal Electronic energy + Delta-G solvation = -21755.054333 eV Core-core repulsion = 18706.532718 eV Total energy + Delta-G solvation = -3048.521615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.98562 -38.04326 -35.35050 -34.36493 -32.91439 -31.20091 -29.71145 -29.11615 -26.13665 -25.21742 -24.83740 -23.25173 -22.21253 -20.52779 -20.22807 -18.26075 -16.67553 -16.23514 -15.92599 -15.15788 -14.87798 -14.63423 -14.55905 -14.11279 -13.86886 -13.68877 -13.40014 -12.82173 -12.58704 -12.46225 -12.21941 -12.06214 -11.77148 -11.53744 -11.35183 -11.27777 -11.12141 -11.03263 -10.98521 -10.76437 -10.72192 -10.66474 -10.38982 -10.19972 -10.13759 -9.12723 -8.84874 -8.40160 -8.16567 -7.52307 -6.03720 -4.11157 3.28537 3.35637 3.38086 3.42688 3.86067 4.40223 4.48757 4.56188 4.63810 4.78430 5.02859 5.08714 5.20078 5.25560 5.27712 5.30651 5.33483 5.45665 5.58707 5.67623 5.70124 5.76713 5.83812 5.84709 5.94269 5.96876 6.03389 6.09194 6.13605 6.28926 6.35269 6.77724 6.83276 7.04607 7.11594 7.49016 7.53115 7.58012 7.75895 8.05753 8.24077 8.58927 8.88557 9.12764 9.55427 11.01652 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031952 B = 0.004442 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.109745 B = 6302.314484 C = 6540.183084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.085 4.085 4 H 0.072 0.928 5 C -0.155 4.155 6 C 0.059 3.941 7 N -0.667 5.667 8 C 0.073 3.927 9 H 0.096 0.904 10 C 0.512 3.488 11 O -0.545 6.545 12 N -0.592 5.592 13 C 0.083 3.917 14 C 0.258 3.742 15 H 0.063 0.937 16 C -0.146 4.146 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.898 3.102 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.143 4.143 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.351 0.649 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.010 0.990 41 H 0.093 0.907 42 H 0.262 0.738 43 H 0.067 0.933 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.529 -5.614 -1.844 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.090 0.910 5 C -0.194 4.194 6 C -0.071 4.071 7 N -0.298 5.298 8 C -0.041 4.041 9 H 0.114 0.886 10 C 0.298 3.702 11 O -0.423 6.423 12 N -0.324 5.324 13 C -0.061 4.061 14 C 0.158 3.842 15 H 0.081 0.919 16 C -0.205 4.205 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.183 4.183 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.029 0.971 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.876 -4.917 -2.135 18.662 hybrid contribution 0.117 -0.206 0.631 0.674 sum -17.759 -5.122 -1.504 18.544 Atomic orbital electron populations 1.21804 0.95932 1.01380 1.01823 1.21559 0.95760 0.96260 1.02092 1.21201 0.94903 0.96107 0.98127 0.90967 1.22404 1.01302 0.98051 0.97635 1.22047 0.87663 0.95014 1.02387 1.60352 1.07708 1.57876 1.03815 1.21532 0.93979 0.94129 0.94465 0.88575 1.20169 0.88909 0.77223 0.83927 1.90626 1.65781 1.50282 1.35643 1.48177 1.09324 1.69914 1.04949 1.21648 0.94511 1.01053 0.88930 1.18926 0.72815 0.93689 0.98811 0.91926 1.22094 1.04745 0.96016 0.97641 1.21368 0.92078 1.12352 1.30317 0.92251 1.24895 0.96484 0.96478 0.95999 1.69891 1.01253 1.37438 1.44145 0.86443 0.78646 0.82227 0.80089 1.19817 1.20996 1.20917 1.22296 0.95482 0.97123 1.03385 0.92586 0.92993 0.92796 0.92095 0.91889 0.91359 0.91962 0.91056 0.90593 0.82930 0.93346 0.92764 0.90888 0.95154 0.97067 0.88821 0.92803 0.91392 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.15 0.36 -0.78 16 2 C -0.12 -1.05 5.41 -26.74 -0.14 -1.19 16 3 C -0.08 -0.84 2.25 -90.50 -0.20 -1.04 16 4 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 5 C -0.15 -1.46 5.06 -26.65 -0.13 -1.59 16 6 C 0.06 0.64 6.55 -3.83 -0.03 0.62 16 7 N -0.67 -9.95 6.28 -107.98 -0.68 -10.62 16 8 C 0.07 1.12 1.98 -68.88 -0.14 0.99 16 9 H 0.10 1.41 7.21 -51.93 -0.37 1.04 16 10 C 0.51 10.79 6.93 -10.98 -0.08 10.71 16 11 O -0.55 -13.73 15.52 5.56 0.09 -13.64 16 12 N -0.59 -12.78 2.75 -175.26 -0.48 -13.26 16 13 C 0.08 1.40 9.13 59.85 0.55 1.94 16 14 C 0.26 6.69 2.64 -69.08 -0.18 6.51 16 15 H 0.06 1.89 6.90 -51.93 -0.36 1.54 16 16 C -0.15 -3.53 8.95 37.16 0.33 -3.20 16 17 C -0.52 -14.38 8.37 -34.44 -0.29 -14.67 16 18 H 0.06 1.62 7.64 -52.49 -0.40 1.22 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.46 11.32 55.43 0.63 -24.84 16 21 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 C -0.14 -1.81 4.37 -26.65 -0.12 -1.93 16 26 H 0.06 0.40 6.62 -51.93 -0.34 0.06 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.55 6.69 -51.93 -0.35 0.20 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.35 5.46 8.31 -39.29 -0.33 5.13 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.73 4.75 -51.93 -0.25 0.48 16 38 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 39 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.95 6.32 -51.93 -0.33 0.62 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -31.01 334.82 -8.09 -39.10 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.51 Total: 3.85 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.16 Total: -1.98 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.53 Total: -48.72 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.01 -8.09 -39.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253153008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.214 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds