Wall clock time and date at job start Mon Mar 30 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47476 * 2 1 4 4 H 1.09003 * 109.47044 * 304.99467 * 3 2 1 5 5 C 1.50695 * 109.47170 * 184.99759 * 3 2 1 6 6 H 1.07995 * 120.00110 * 239.99423 * 5 3 2 7 7 C 1.37880 * 120.00218 * 60.00096 * 5 3 2 8 8 N 1.31516 * 119.99810 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00394 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46846 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47071 * 119.99564 * 9 7 5 12 12 H 1.48503 * 109.47035 * 240.00028 * 9 7 5 13 13 N 1.46500 * 109.47129 * 64.99453 * 3 2 1 14 14 C 1.34775 * 120.00286 * 275.00079 * 13 3 2 15 15 O 1.21281 * 119.99733 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99982 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.48744 * 40.00201 * 16 14 13 18 18 C 1.53134 * 109.49852 * 279.95367 * 16 14 13 19 19 C 1.52864 * 109.27206 * 164.46848 * 18 16 14 20 20 C 1.52779 * 109.75131 * 315.87675 * 19 18 16 21 21 C 1.52973 * 109.62157 * 112.01292 * 20 19 18 22 22 C 1.53199 * 109.02443 * 284.38618 * 21 20 19 23 23 C 1.52990 * 109.32425 * 74.87208 * 22 21 20 24 24 N 1.46802 * 109.71151 * 247.03386 * 23 22 21 25 25 H 1.09004 * 109.46907 * 60.00191 * 1 2 3 26 26 H 1.08998 * 109.47207 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47146 * 300.00201 * 1 2 3 28 28 H 1.09005 * 109.46847 * 239.99240 * 2 1 3 29 29 H 1.09001 * 109.46531 * 120.00152 * 2 1 3 30 30 H 0.96997 * 120.00144 * 180.02562 * 8 7 5 31 31 H 0.97005 * 119.99688 * 95.00418 * 13 3 2 32 32 H 1.09002 * 109.50378 * 284.40182 * 18 16 14 33 33 H 1.08998 * 109.50407 * 44.53008 * 18 16 14 34 34 H 1.08996 * 109.42047 * 195.79201 * 19 18 16 35 35 H 1.08995 * 109.42151 * 75.96451 * 19 18 16 36 36 H 1.08999 * 109.44664 * 351.97082 * 20 19 18 37 37 H 1.09002 * 109.42096 * 232.04690 * 20 19 18 38 38 H 1.08998 * 109.54203 * 164.52347 * 21 20 19 39 39 H 1.09001 * 109.61919 * 44.29636 * 21 20 19 40 40 H 1.08996 * 109.49965 * 314.91271 * 22 21 20 41 41 H 1.09005 * 109.49312 * 194.81879 * 22 21 20 42 42 H 1.08995 * 109.43308 * 126.95628 * 23 22 21 43 43 H 1.09001 * 109.39021 * 7.07489 * 23 22 21 44 44 H 1.00899 * 110.99840 * 280.11834 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9814 -0.8419 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1434 0.8782 -1.2279 8 7 3.4064 0.3364 -2.1728 9 14 6.0050 0.8809 -1.3817 10 1 6.5988 1.5470 -0.1946 11 1 6.4971 -0.5179 -1.4628 12 1 6.3991 1.6164 -2.6101 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6644 1.3668 15 8 -0.3394 2.6319 0.4342 16 6 0.0368 3.3387 2.6543 17 1 0.8864 3.8937 3.0522 18 6 -0.4036 2.2810 3.6703 19 6 -0.4335 2.9037 5.0661 20 6 0.8192 3.7516 5.2801 21 6 0.4319 5.2294 5.3593 22 6 0.1184 5.7398 3.9493 23 6 -1.2470 5.2076 3.5101 24 7 -1.0763 4.2630 2.3994 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8294 -0.0621 -2.9494 31 1 2.2720 2.1231 1.9978 32 1 -1.3990 1.9200 3.4115 33 1 0.3006 1.4491 3.6580 34 1 -0.4681 2.1127 5.8151 35 1 -1.3182 3.5329 5.1633 36 1 1.5062 3.6008 4.4474 37 1 1.3044 3.4533 6.2094 38 1 1.2597 5.8013 5.7785 39 1 -0.4479 5.3437 5.9925 40 1 0.8847 5.3906 3.2572 41 1 0.1000 6.8297 3.9527 42 1 -1.8732 6.0389 3.1862 43 1 -1.7239 4.6993 4.3482 44 1 -0.9479 4.7514 1.5259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305985433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:05 Heat of formation + Delta-G solvation = -37.915013 kcal Electronic energy + Delta-G solvation = -22126.678149 eV Core-core repulsion = 19078.737535 eV Total energy + Delta-G solvation = -3047.940614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12792 -38.13321 -35.06458 -33.63550 -32.99819 -32.23542 -30.82856 -27.71729 -26.96375 -26.44080 -23.16136 -22.28723 -21.30255 -20.88913 -19.61700 -19.15610 -17.65796 -16.17369 -15.95944 -15.02078 -14.80494 -14.60553 -14.45469 -14.13519 -13.99236 -13.71843 -13.35046 -12.94390 -12.64982 -12.15778 -12.03026 -11.80338 -11.48469 -11.46662 -11.29554 -11.23334 -11.10862 -10.95140 -10.82955 -10.67809 -10.45675 -10.29359 -10.14504 -9.87928 -9.59413 -9.02562 -8.79596 -8.48428 -8.21292 -7.77316 -6.12079 -4.21446 3.22880 3.30857 3.33147 3.44030 3.95682 4.33113 4.46602 4.65925 4.76684 4.85060 5.01360 5.07802 5.17685 5.20390 5.39014 5.46475 5.50869 5.59606 5.63691 5.79220 5.86622 5.91547 5.94520 6.05467 6.15329 6.28168 6.37505 6.42881 6.43257 6.50881 6.70552 7.06710 7.09865 7.25350 7.40673 7.48222 7.53260 7.63930 7.76596 7.92349 8.20111 8.70883 8.79963 9.18868 9.46455 10.93192 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023699 B = 0.005179 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.193032 B = 5404.917963 C = 5885.267338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.498 3.502 15 O -0.536 6.536 16 C 0.051 3.949 17 H 0.080 0.920 18 C -0.103 4.103 19 C -0.126 4.126 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.168 4.168 23 C 0.049 3.951 24 N -0.665 5.665 25 H 0.049 0.951 26 H 0.021 0.979 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 7.266 14.476 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.357 5.357 14 C 0.282 3.718 15 O -0.414 6.414 16 C -0.062 4.062 17 H 0.097 0.903 18 C -0.141 4.141 19 C -0.163 4.163 20 C -0.170 4.170 21 C -0.153 4.153 22 C -0.207 4.207 23 C -0.080 4.080 24 N -0.297 5.297 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.218 0.782 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.305 6.692 13.802 16.584 hybrid contribution 2.131 0.539 0.081 2.200 sum -4.174 7.230 13.883 16.200 Atomic orbital electron populations 1.21838 0.98258 0.97978 1.01360 1.21926 0.92670 0.99817 1.02158 1.18761 0.94084 0.89193 0.81046 0.93435 1.21269 0.90788 1.38890 1.06208 0.92148 1.24886 0.98525 0.94847 0.95418 1.69907 1.34995 1.37646 1.09357 0.86425 0.84992 0.77783 0.78079 1.19796 1.20859 1.20905 1.46500 1.14569 1.56273 1.18374 1.20353 0.82683 0.79963 0.88828 1.90675 1.51095 1.59245 1.40372 1.22031 0.94242 0.95137 0.94767 0.90292 1.21508 1.02839 0.96691 0.93074 1.21817 0.98390 0.99299 0.96766 1.21815 0.98327 0.94823 1.01992 1.21694 1.01112 0.96001 0.96498 1.22546 0.99700 1.00743 0.97683 1.22434 0.95661 0.94692 0.95258 1.60336 1.43776 1.20452 1.05105 0.93230 0.95968 0.94070 0.88401 0.95131 0.92636 0.78231 0.90494 0.91343 0.92186 0.90817 0.91003 0.92175 0.92350 0.91760 0.90951 0.92008 0.91407 0.89892 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.77 2.24 -69.09 -0.15 6.62 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.68 11.29 55.43 0.63 -24.06 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.71 -14.45 5.02 -54.94 -0.28 -14.72 16 14 C 0.50 9.68 5.44 -10.99 -0.06 9.62 16 15 O -0.54 -12.44 13.39 5.56 0.07 -12.36 16 16 C 0.05 0.74 2.19 -68.79 -0.15 0.59 16 17 H 0.08 1.06 2.79 -51.93 -0.14 0.91 16 18 C -0.10 -1.36 5.22 -26.73 -0.14 -1.50 16 19 C -0.13 -1.30 5.45 -26.91 -0.15 -1.45 16 20 C -0.13 -1.28 5.46 -26.86 -0.15 -1.43 16 21 C -0.12 -1.02 5.63 -26.64 -0.15 -1.17 16 22 C -0.17 -1.66 5.54 -26.63 -0.15 -1.81 16 23 C 0.05 0.53 6.16 -3.88 -0.02 0.50 16 24 N -0.66 -9.36 6.23 -107.95 -0.67 -10.03 16 25 H 0.05 1.20 7.85 -51.93 -0.41 0.80 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 6.92 8.54 -40.82 -0.35 6.57 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.74 4.69 -51.93 -0.24 0.50 16 36 H 0.07 0.77 5.54 -51.93 -0.29 0.49 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.52 7.51 -51.93 -0.39 0.13 16 40 H 0.07 0.83 5.56 -51.93 -0.29 0.54 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.86 4.59 -51.93 -0.24 0.62 16 44 H 0.35 5.26 8.24 -39.29 -0.32 4.94 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -29.07 321.82 -8.77 -37.84 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -7.01 Total: 11.62 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.34 Total: -8.65 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.32 Total: -48.81 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.07 -8.77 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305985433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.076 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds