Wall clock time and date at job start Mon Mar 30 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47476 * 2 1 4 4 H 1.09003 * 109.47044 * 304.99467 * 3 2 1 5 5 C 1.50695 * 109.47170 * 184.99759 * 3 2 1 6 6 H 1.07995 * 120.00110 * 239.99423 * 5 3 2 7 7 C 1.37880 * 120.00218 * 60.00096 * 5 3 2 8 8 N 1.31516 * 119.99810 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00394 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46846 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47071 * 119.99564 * 9 7 5 12 12 H 1.48503 * 109.47035 * 240.00028 * 9 7 5 13 13 N 1.46500 * 109.47129 * 64.99453 * 3 2 1 14 14 C 1.34775 * 120.00286 * 275.00079 * 13 3 2 15 15 O 1.21281 * 119.99733 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99982 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.48744 * 40.00201 * 16 14 13 18 18 C 1.53134 * 109.49852 * 279.95367 * 16 14 13 19 19 C 1.52864 * 109.27206 * 164.46848 * 18 16 14 20 20 C 1.52779 * 109.75131 * 315.87675 * 19 18 16 21 21 C 1.52973 * 109.62157 * 112.01292 * 20 19 18 22 22 C 1.53199 * 109.02443 * 284.38618 * 21 20 19 23 23 C 1.52990 * 109.32425 * 74.87208 * 22 21 20 24 24 N 1.46802 * 109.71151 * 247.03386 * 23 22 21 25 25 H 1.09004 * 109.46907 * 60.00191 * 1 2 3 26 26 H 1.08998 * 109.47207 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47146 * 300.00201 * 1 2 3 28 28 H 1.09005 * 109.46847 * 239.99240 * 2 1 3 29 29 H 1.09001 * 109.46531 * 120.00152 * 2 1 3 30 30 H 0.96997 * 120.00144 * 180.02562 * 8 7 5 31 31 H 0.97005 * 119.99688 * 95.00418 * 13 3 2 32 32 H 1.09002 * 109.50378 * 284.40182 * 18 16 14 33 33 H 1.08998 * 109.50407 * 44.53008 * 18 16 14 34 34 H 1.08996 * 109.42047 * 195.79201 * 19 18 16 35 35 H 1.08995 * 109.42151 * 75.96451 * 19 18 16 36 36 H 1.08999 * 109.44664 * 351.97082 * 20 19 18 37 37 H 1.09002 * 109.42096 * 232.04690 * 20 19 18 38 38 H 1.08998 * 109.54203 * 164.52347 * 21 20 19 39 39 H 1.09001 * 109.61919 * 44.29636 * 21 20 19 40 40 H 1.08996 * 109.49965 * 314.91271 * 22 21 20 41 41 H 1.09005 * 109.49312 * 194.81879 * 22 21 20 42 42 H 1.08995 * 109.43308 * 126.95628 * 23 22 21 43 43 H 1.09001 * 109.39021 * 7.07489 * 23 22 21 44 44 H 1.00899 * 110.99840 * 280.11834 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9814 -0.8419 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1434 0.8782 -1.2279 8 7 3.4064 0.3364 -2.1728 9 14 6.0050 0.8809 -1.3817 10 1 6.5988 1.5470 -0.1946 11 1 6.4971 -0.5179 -1.4628 12 1 6.3991 1.6164 -2.6101 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6644 1.3668 15 8 -0.3394 2.6319 0.4342 16 6 0.0368 3.3387 2.6543 17 1 0.8864 3.8937 3.0522 18 6 -0.4036 2.2810 3.6703 19 6 -0.4335 2.9037 5.0661 20 6 0.8192 3.7516 5.2801 21 6 0.4319 5.2294 5.3593 22 6 0.1184 5.7398 3.9493 23 6 -1.2470 5.2076 3.5101 24 7 -1.0763 4.2630 2.3994 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8294 -0.0621 -2.9494 31 1 2.2720 2.1231 1.9978 32 1 -1.3990 1.9200 3.4115 33 1 0.3006 1.4491 3.6580 34 1 -0.4681 2.1127 5.8151 35 1 -1.3182 3.5329 5.1633 36 1 1.5062 3.6008 4.4474 37 1 1.3044 3.4533 6.2094 38 1 1.2597 5.8013 5.7785 39 1 -0.4479 5.3437 5.9925 40 1 0.8847 5.3906 3.2572 41 1 0.1000 6.8297 3.9527 42 1 -1.8732 6.0389 3.1862 43 1 -1.7239 4.6993 4.3482 44 1 -0.9479 4.7514 1.5259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305985433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:05 Heat of formation + Delta-G solvation = -57.794259 kcal Electronic energy + Delta-G solvation = -22127.540178 eV Core-core repulsion = 19078.737535 eV Total energy + Delta-G solvation = -3048.802643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.39595 -39.49924 -36.90484 -34.63360 -34.35211 -33.83693 -32.64751 -29.30851 -27.98537 -27.80329 -25.04043 -23.43782 -22.33889 -22.04258 -21.31585 -20.51726 -19.17820 -17.83965 -17.47691 -16.68603 -16.18479 -15.99813 -15.63616 -15.48809 -14.93083 -14.81613 -14.61598 -14.35763 -14.24712 -13.75395 -13.41046 -13.22449 -13.07839 -12.88776 -12.76081 -12.70944 -12.38916 -12.29715 -12.13757 -12.05490 -11.94319 -11.59043 -11.48119 -11.34101 -11.04021 -10.70619 -10.58546 -10.37111 -9.61062 -9.24894 -8.16296 -6.33705 1.43180 1.44406 1.55977 1.87189 2.34262 2.59070 3.13063 3.30798 3.79169 3.93648 3.97854 4.10285 4.12220 4.22422 4.30075 4.45241 4.48911 4.56336 4.57568 4.73915 4.76831 4.78171 4.96405 5.01184 5.05069 5.07783 5.17740 5.26045 5.27982 5.33576 5.38782 5.44425 5.52347 5.56254 5.59120 5.63861 5.79292 5.90446 6.10387 6.17524 6.38508 6.75043 7.03354 7.33928 7.61927 8.89239 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023699 B = 0.005179 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.193032 B = 5404.917963 C = 5885.267338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.004 1.004 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.705 5.705 14 C 0.494 3.506 15 O -0.577 6.577 16 C 0.065 3.935 17 H 0.098 0.902 18 C -0.100 4.100 19 C -0.118 4.118 20 C -0.133 4.133 21 C -0.112 4.112 22 C -0.164 4.164 23 C 0.049 3.951 24 N -0.679 5.679 25 H 0.023 0.977 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.400 0.600 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.556 8.001 17.168 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.354 5.354 14 C 0.280 3.720 15 O -0.457 6.457 16 C -0.047 4.047 17 H 0.115 0.885 18 C -0.139 4.139 19 C -0.155 4.155 20 C -0.170 4.170 21 C -0.150 4.150 22 C -0.203 4.203 23 C -0.079 4.079 24 N -0.310 5.310 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.569 7.442 16.549 18.981 hybrid contribution 1.838 0.340 -0.777 2.025 sum -3.730 7.782 15.772 17.979 Atomic orbital electron populations 1.21667 0.97041 0.99006 1.00229 1.21775 0.93642 0.99265 1.01195 1.18334 0.93573 0.89104 0.81403 0.98625 1.21598 0.91427 1.38802 1.06616 0.91135 1.25766 1.03249 0.94399 0.95038 1.70059 1.36985 1.38406 1.09912 0.85340 0.79218 0.77845 0.78183 1.18446 1.20428 1.21057 1.46267 1.15499 1.56289 1.17364 1.21251 0.81594 0.79040 0.90078 1.90655 1.52121 1.60604 1.42351 1.21974 0.95335 0.95457 0.91922 0.88491 1.21505 1.01622 0.96252 0.94504 1.21775 0.99124 0.99811 0.94756 1.21821 0.97659 0.95347 1.02186 1.21695 1.02111 0.95329 0.95824 1.22496 0.98296 1.01532 0.98003 1.22544 0.96581 0.94454 0.94321 1.60380 1.43434 1.21378 1.05838 0.95779 0.93726 0.93697 0.91113 0.94091 0.92632 0.76562 0.92091 0.91776 0.90819 0.90161 0.92277 0.90737 0.91394 0.90373 0.92743 0.90768 0.90300 0.88994 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.51 71.98 0.61 -5.05 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.40 2.24 44.24 0.10 14.50 16 4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 5 C -0.55 -28.88 8.73 25.60 0.22 -28.66 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.84 5.29 84.66 0.45 1.28 16 8 N -0.92 -52.60 11.29 21.45 0.24 -52.36 16 9 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.71 -29.09 5.02 -446.11 -2.24 -31.33 16 14 C 0.49 19.55 5.44 87.66 0.48 20.03 16 15 O -0.58 -27.82 13.39 -3.03 -0.04 -27.86 16 16 C 0.07 1.87 2.19 44.21 0.10 1.97 16 17 H 0.10 2.47 2.79 -2.39 -0.01 2.47 16 18 C -0.10 -2.52 5.22 30.59 0.16 -2.36 16 19 C -0.12 -2.10 5.45 30.48 0.17 -1.94 16 20 C -0.13 -2.16 5.46 30.51 0.17 -1.99 16 21 C -0.11 -1.60 5.63 30.65 0.17 -1.42 16 22 C -0.16 -2.84 5.54 30.66 0.17 -2.67 16 23 C 0.05 0.96 6.16 86.32 0.53 1.49 16 24 N -0.68 -18.69 6.23 -495.45 -3.08 -21.78 16 25 H 0.02 1.20 7.85 -2.38 -0.02 1.18 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.04 2.02 5.64 -2.39 -0.01 2.00 16 28 H 0.07 3.96 5.95 -2.38 -0.01 3.94 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.40 14.15 8.54 -92.70 -0.79 13.36 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.66 8.04 -2.39 -0.02 1.64 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.35 4.69 -2.39 -0.01 1.34 16 36 H 0.06 1.12 5.54 -2.39 -0.01 1.11 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.94 7.51 -2.39 -0.02 0.92 16 40 H 0.05 1.15 5.56 -2.39 -0.01 1.14 16 41 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.64 4.59 -2.39 -0.01 1.63 16 44 H 0.34 10.34 8.24 -89.69 -0.74 9.60 16 Total: -1.00 -64.51 321.82 -0.12 -64.63 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.52 Total: 35.28 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 3.49 Total: -10.64 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -5.08 Total: -105.47 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.04 Total: -27.86 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -64.51 -0.12 -64.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305985433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.840 kcal (2) G-P(sol) polarization free energy of solvation -64.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds