Wall clock time and date at job start Mon Mar 30 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47474 * 2 1 4 4 H 1.09000 * 109.46924 * 305.37511 * 3 2 1 5 5 C 1.50698 * 109.47069 * 185.37799 * 3 2 1 6 6 H 1.08001 * 120.00058 * 244.79517 * 5 3 2 7 7 C 1.37874 * 120.00479 * 64.80277 * 5 3 2 8 8 N 1.31515 * 119.99769 * 7.03674 * 7 5 3 9 9 Si 1.86797 * 120.00401 * 187.04402 * 7 5 3 10 10 H 1.48497 * 109.47045 * 84.98854 * 9 7 5 11 11 H 1.48504 * 109.47227 * 204.98929 * 9 7 5 12 12 H 1.48497 * 109.46839 * 324.98962 * 9 7 5 13 13 N 1.46501 * 109.47130 * 65.37725 * 3 2 1 14 14 C 1.34774 * 119.99958 * 275.00172 * 13 3 2 15 15 O 1.21284 * 120.00246 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00179 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.47374 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.47176 * 305.00253 * 17 16 14 19 19 C 1.53004 * 109.47119 * 65.00026 * 17 16 14 20 20 C 1.52998 * 109.47119 * 180.02562 * 19 17 16 21 21 C 1.53001 * 109.47142 * 299.99831 * 20 19 17 22 22 C 1.52999 * 109.46667 * 60.00186 * 21 20 19 23 23 C 1.52998 * 109.47387 * 299.99450 * 22 21 20 24 24 H 1.08998 * 109.47097 * 179.97438 * 23 22 21 25 25 N 1.46899 * 109.47294 * 300.00494 * 23 22 21 26 26 H 1.09004 * 109.47193 * 300.00247 * 1 2 3 27 27 H 1.09002 * 109.47199 * 59.99931 * 1 2 3 28 28 H 1.08996 * 109.47644 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47247 * 120.00535 * 2 1 3 30 30 H 1.09004 * 109.47193 * 239.99753 * 2 1 3 31 31 H 0.97003 * 120.00517 * 180.02562 * 8 7 5 32 32 H 0.96996 * 119.99727 * 94.99998 * 13 3 2 33 33 H 1.08999 * 109.47364 * 300.00302 * 16 14 13 34 34 H 1.08997 * 109.47132 * 59.99952 * 16 14 13 35 35 H 1.08996 * 109.47190 * 300.00634 * 19 17 16 36 36 H 1.08999 * 109.46912 * 60.00065 * 19 17 16 37 37 H 1.08999 * 109.47176 * 60.00226 * 20 19 17 38 38 H 1.09003 * 109.46802 * 180.02562 * 20 19 17 39 39 H 1.09003 * 109.47073 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.47408 * 300.00253 * 21 20 19 41 41 H 1.08995 * 109.47512 * 60.00235 * 22 21 20 42 42 H 1.09004 * 109.46655 * 179.97438 * 22 21 20 43 43 H 1.00901 * 110.99974 * 299.99790 * 25 23 22 44 44 H 1.00897 * 111.00112 * 63.95205 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6003 1.9833 -0.8379 5 6 3.5411 1.4444 -0.1332 6 1 4.1544 1.8168 0.6741 7 6 4.1317 0.9710 -1.2856 8 7 3.3877 0.6475 -2.3206 9 14 5.9885 0.7890 -1.3768 10 1 6.3861 -0.5221 -0.8039 11 1 6.4241 0.8622 -2.7946 12 1 6.6315 1.8822 -0.6044 13 7 1.6603 2.0947 1.2556 14 6 0.4438 2.6614 1.3796 15 8 -0.3368 2.6310 0.4518 16 6 0.0529 3.3318 2.6714 17 6 -1.3666 3.8891 2.5476 18 1 -1.4240 4.5480 1.6812 19 6 -2.3549 2.7338 2.3760 20 6 -3.7743 3.2911 2.2516 21 6 -4.1254 4.0791 3.5152 22 6 -3.1371 5.2344 3.6868 23 6 -1.7177 4.6771 3.8112 24 1 -1.0136 5.5002 3.9330 25 7 -1.6408 3.7894 4.9791 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.8030 0.3140 -3.1313 32 1 2.2844 2.1187 1.9977 33 1 0.0890 2.6054 3.4832 34 1 0.7456 4.1466 2.8819 35 1 -2.1051 2.1726 1.4757 36 1 -2.2975 2.0749 3.2424 37 1 -3.8314 3.9498 1.3850 38 1 -4.4784 2.4680 2.1298 39 1 -5.1368 4.4758 3.4268 40 1 -4.0683 3.4205 4.3818 41 1 -3.1942 5.8931 2.8202 42 1 -3.3875 5.7961 4.5868 43 1 -1.8685 4.2868 5.8270 44 1 -2.2370 2.9841 4.8611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310561329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:28 Heat of formation + Delta-G solvation = -92.428351 kcal Electronic energy + Delta-G solvation = -21733.106019 eV Core-core repulsion = 18682.801529 eV Total energy + Delta-G solvation = -3050.304490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.08883 -39.65380 -36.85154 -34.24235 -33.78843 -33.38767 -32.61528 -29.83169 -29.03861 -27.30621 -24.94217 -23.40058 -22.86040 -21.68210 -20.89981 -19.80381 -18.74569 -17.56421 -17.15822 -16.89847 -16.42867 -16.05958 -15.65307 -15.43395 -15.07375 -14.81204 -14.56702 -14.31941 -14.03800 -13.47891 -13.30695 -13.28777 -13.11752 -12.90543 -12.72096 -12.62353 -12.61737 -12.38455 -12.16781 -12.00233 -11.78644 -11.58033 -11.34293 -11.25539 -11.04645 -10.89152 -10.54319 -10.23893 -9.51415 -9.42370 -8.17354 -6.31331 1.44384 1.45339 1.54926 2.03449 2.39014 2.80143 3.13976 3.70519 3.84224 3.88314 3.97528 4.17515 4.25866 4.39884 4.48609 4.52453 4.56418 4.57101 4.64889 4.73138 4.76203 4.83064 4.88498 5.01399 5.07174 5.11912 5.18417 5.25390 5.28239 5.31199 5.40603 5.45421 5.57205 5.59419 5.61904 5.71124 5.79088 6.00099 6.13440 6.38608 6.75543 6.79135 7.13148 7.36321 7.74308 8.90792 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036290 B = 0.004229 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.386671 B = 6618.933610 C = 7013.121994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C 0.277 3.723 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.967 3.033 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.712 5.712 14 C 0.492 3.508 15 O -0.583 6.583 16 C -0.114 4.114 17 C -0.056 4.056 18 H 0.053 0.947 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.150 4.150 23 C 0.103 3.897 24 H 0.082 0.918 25 N -0.843 5.843 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.348 0.652 44 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 6.427 15.966 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.152 4.152 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.361 5.361 14 C 0.280 3.720 15 O -0.465 6.465 16 C -0.154 4.154 17 C -0.076 4.076 18 H 0.072 0.928 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.189 4.189 23 C -0.009 4.009 24 H 0.100 0.900 25 N -0.375 5.375 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.162 0.838 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.920 6.252 14.935 19.529 hybrid contribution 0.226 -0.034 -0.531 0.578 sum -10.694 6.218 14.404 18.987 Atomic orbital electron populations 1.21667 0.96619 0.99086 1.00542 1.21689 0.94149 0.99196 1.00153 1.18294 0.93516 0.89029 0.81804 0.98320 1.21594 0.91689 1.43040 1.02415 0.91175 1.25775 1.03157 0.94768 0.94720 1.70125 1.37387 1.44193 1.03881 0.85437 0.79327 0.79000 0.77059 1.19579 1.21373 1.18858 1.46322 1.15955 1.56555 1.17231 1.21462 0.81388 0.78348 0.90771 1.90614 1.51619 1.61113 1.43141 1.21589 0.98346 1.01635 0.93835 1.20813 0.92763 0.96860 0.97131 0.92828 1.21623 0.94572 0.97675 1.01672 1.21511 0.96199 0.99550 0.98281 1.21509 0.99074 0.97168 0.97434 1.22301 0.95983 0.98162 1.02495 1.21326 0.95381 0.94409 0.89759 0.89960 1.58930 1.62844 1.11472 1.04234 0.93063 0.95770 0.93703 0.93661 0.93070 0.92720 0.76500 0.87254 0.88384 0.93151 0.91525 0.93439 0.92000 0.91297 0.91232 0.92288 0.90387 0.83792 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.52 71.98 0.61 -4.89 16 2 C -0.11 -5.59 5.49 30.59 0.17 -5.42 16 3 C 0.28 14.43 2.11 44.24 0.09 14.52 16 4 H 0.00 -0.07 7.55 -2.39 -0.02 -0.09 16 5 C -0.55 -29.57 8.67 25.60 0.22 -29.35 16 6 H 0.07 3.54 7.73 -2.91 -0.02 3.52 16 7 C 0.02 0.87 5.19 84.65 0.44 1.31 16 8 N -0.92 -53.95 12.00 21.45 0.26 -53.69 16 9 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 13 N -0.71 -29.61 5.03 -446.10 -2.24 -31.85 16 14 C 0.49 19.13 6.13 87.66 0.54 19.67 16 15 O -0.58 -27.05 11.10 -3.04 -0.03 -27.08 16 16 C -0.11 -3.14 4.94 29.85 0.15 -2.99 16 17 C -0.06 -1.43 1.66 -10.79 -0.02 -1.44 16 18 H 0.05 1.62 7.96 -2.39 -0.02 1.60 16 19 C -0.12 -3.08 4.68 30.59 0.14 -2.94 16 20 C -0.12 -2.58 5.92 30.59 0.18 -2.40 16 21 C -0.11 -1.82 5.66 30.59 0.17 -1.64 16 22 C -0.15 -2.35 5.61 30.59 0.17 -2.18 16 23 C 0.10 1.86 3.14 44.92 0.14 2.00 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 N -0.84 -12.84 8.45 -168.68 -1.43 -14.27 16 26 H 0.05 2.21 5.64 -2.39 -0.01 2.20 16 27 H 0.02 1.18 7.87 -2.39 -0.02 1.16 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 2.83 6.64 -2.39 -0.02 2.81 16 31 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.40 14.32 8.53 -92.71 -0.79 13.53 16 33 H 0.11 2.72 7.77 -2.39 -0.02 2.70 16 34 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 1.75 5.95 -2.39 -0.01 1.73 16 36 H 0.07 1.55 6.57 -2.39 -0.02 1.54 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 0.95 6.76 -2.39 -0.02 0.93 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.35 3.92 9.04 -89.69 -0.81 3.11 16 44 H 0.34 5.20 5.44 -89.70 -0.49 4.71 16 Total: -1.00 -65.31 330.20 0.51 -64.80 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -1.09 Total: 33.12 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 3.01 Total: -15.76 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -3.41 Total: -99.81 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.03 Total: -27.08 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -65.31 0.51 -64.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310561329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.626 kcal (2) G-P(sol) polarization free energy of solvation -65.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds