Wall clock time and date at job start Mon Mar 30 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46932 * 2 1 4 4 H 1.08999 * 109.47007 * 305.69111 * 3 2 1 5 5 C 1.50700 * 109.46600 * 185.69224 * 3 2 1 6 6 H 1.08003 * 120.00435 * 275.00046 * 5 3 2 7 7 C 1.37881 * 120.00019 * 95.00677 * 5 3 2 8 8 N 1.31512 * 120.00236 * 184.82511 * 7 5 3 9 9 Si 1.86794 * 119.99973 * 4.82731 * 7 5 3 10 10 H 1.48501 * 109.47481 * 84.86070 * 9 7 5 11 11 H 1.48501 * 109.47474 * 204.86004 * 9 7 5 12 12 H 1.48502 * 109.47369 * 324.85967 * 9 7 5 13 13 N 1.46500 * 109.47263 * 65.69330 * 3 2 1 14 14 C 1.34772 * 119.99564 * 274.99853 * 13 3 2 15 15 O 1.21280 * 120.00351 * 359.97438 * 14 13 3 16 16 C 1.50709 * 119.99443 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.46785 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.47223 * 55.00169 * 17 16 14 19 19 C 1.53003 * 109.47361 * 295.00218 * 17 16 14 20 20 C 1.52999 * 109.47220 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47543 * 59.99488 * 20 19 17 22 22 C 1.52995 * 109.47053 * 300.00505 * 21 20 19 23 23 C 1.52998 * 109.47684 * 59.99576 * 22 21 20 24 24 H 1.09003 * 109.46849 * 59.99971 * 23 22 21 25 25 N 1.46897 * 109.47228 * 179.97438 * 23 22 21 26 26 H 1.09002 * 109.47237 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47161 * 300.00299 * 1 2 3 28 28 H 1.09003 * 109.47320 * 60.00099 * 1 2 3 29 29 H 1.09007 * 109.47155 * 240.00061 * 2 1 3 30 30 H 1.08997 * 109.46913 * 119.99792 * 2 1 3 31 31 H 0.96995 * 120.00792 * 180.02562 * 8 7 5 32 32 H 0.96993 * 119.99741 * 94.99468 * 13 3 2 33 33 H 1.09000 * 109.47024 * 59.99960 * 16 14 13 34 34 H 1.08994 * 109.47166 * 299.99978 * 16 14 13 35 35 H 1.09003 * 109.46479 * 299.99827 * 19 17 16 36 36 H 1.08994 * 109.47434 * 59.99806 * 19 17 16 37 37 H 1.08999 * 109.47032 * 179.97438 * 20 19 17 38 38 H 1.09003 * 109.46854 * 299.99639 * 20 19 17 39 39 H 1.09003 * 109.46923 * 60.00193 * 21 20 19 40 40 H 1.09000 * 109.47187 * 180.02562 * 21 20 19 41 41 H 1.09007 * 109.47130 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47001 * 299.99640 * 22 21 20 43 43 H 1.00902 * 111.00226 * 300.00115 * 25 23 22 44 44 H 1.00902 * 111.00026 * 63.96274 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1409 6 1 4.1651 1.3333 0.7330 7 6 4.1157 1.5893 -1.3856 8 7 5.4204 1.4964 -1.5218 9 14 3.0419 1.9171 -2.8785 10 1 2.7754 3.3740 -2.9864 11 1 3.7402 1.4497 -4.1029 12 1 1.7562 1.1882 -2.7332 13 7 1.6667 2.0925 1.2588 14 6 0.4508 2.6588 1.3900 15 8 -0.3341 2.6309 0.4659 16 6 0.0667 3.3269 2.6851 17 6 -1.3534 3.8844 2.5697 18 1 -2.0342 3.0861 2.2738 19 6 -1.3816 4.9948 1.5174 20 6 -2.8016 5.5526 1.4025 21 6 -3.2377 6.1202 2.7547 22 6 -3.2095 5.0098 3.8069 23 6 -1.7895 4.4519 3.9219 24 1 -1.1085 5.2500 4.2176 25 7 -1.7625 3.3862 4.9326 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8253 1.5984 -2.3973 32 1 2.2947 2.1151 1.9977 33 1 0.7605 4.1414 2.8936 34 1 0.1070 2.5990 3.4953 35 1 -0.7009 5.7930 1.8134 36 1 -1.0706 4.5906 0.5542 37 1 -2.8215 6.3440 0.6532 38 1 -3.4826 4.7545 1.1068 39 1 -2.5567 6.9183 3.0505 40 1 -4.2495 6.5172 2.6729 41 1 -3.5198 5.4142 4.7704 42 1 -3.8906 4.2117 3.5112 43 1 -2.0466 3.7365 5.8352 44 1 -2.3364 2.6057 4.6505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310561331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:30 Heat of formation + Delta-G solvation = -96.630793 kcal Electronic energy + Delta-G solvation = -21712.025209 eV Core-core repulsion = 18661.538487 eV Total energy + Delta-G solvation = -3050.486722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.05313 -39.50180 -36.88832 -34.48749 -34.33610 -33.57692 -32.73200 -29.79581 -29.13561 -27.25084 -24.66681 -23.38787 -22.48271 -21.54934 -21.05814 -20.76493 -19.11708 -17.51119 -17.33276 -16.64739 -16.35642 -16.20715 -15.99425 -15.24305 -15.10193 -14.78400 -14.65275 -14.47377 -13.86492 -13.79322 -13.74978 -13.44461 -13.33720 -13.03096 -12.83686 -12.62705 -12.41607 -12.32509 -12.04421 -11.87742 -11.79530 -11.63871 -11.42467 -11.34570 -11.18606 -11.09464 -10.83174 -10.33171 -9.57668 -9.43170 -8.38749 -6.43727 1.27732 1.31918 1.43174 1.97609 2.26661 2.61709 3.05511 3.63543 3.76166 3.82477 4.11361 4.19323 4.26221 4.33454 4.36359 4.43652 4.48397 4.56676 4.57232 4.60213 4.66407 4.82110 4.88631 4.90249 5.06971 5.10876 5.11960 5.21317 5.26753 5.28926 5.31328 5.33116 5.36144 5.44749 5.54152 5.58002 5.61312 5.88365 6.17076 6.33675 6.61798 6.71188 7.05194 7.22843 7.64024 8.76611 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026746 B = 0.004822 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.634607 B = 5804.871977 C = 6080.802313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.123 4.123 3 C 0.242 3.758 4 H 0.028 0.972 5 C -0.526 4.526 6 H 0.054 0.946 7 C 0.034 3.966 8 N -0.932 5.932 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.278 1.278 12 H -0.256 1.256 13 N -0.710 5.710 14 C 0.496 3.504 15 O -0.581 6.581 16 C -0.120 4.120 17 C -0.051 4.051 18 H 0.057 0.943 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.145 4.145 23 C 0.103 3.897 24 H 0.081 0.919 25 N -0.847 5.847 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.270 0.730 32 H 0.402 0.598 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.350 0.650 44 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.412 6.874 12.514 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.162 4.162 3 C 0.138 3.862 4 H 0.046 0.954 5 C -0.564 4.564 6 H 0.072 0.928 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.751 3.249 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.181 1.181 13 N -0.359 5.359 14 C 0.285 3.715 15 O -0.463 6.463 16 C -0.160 4.160 17 C -0.071 4.071 18 H 0.075 0.925 19 C -0.159 4.159 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.185 4.185 23 C -0.009 4.009 24 H 0.100 0.900 25 N -0.376 5.376 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.236 0.764 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.164 0.836 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.999 6.797 11.590 21.668 hybrid contribution -0.504 0.203 -0.788 0.957 sum -17.503 7.000 10.802 21.726 Atomic orbital electron populations 1.21746 0.95708 1.00114 1.01219 1.21979 0.95105 0.98173 1.00944 1.18839 0.92945 0.90192 0.84234 0.95413 1.21267 0.90564 1.50153 0.94462 0.92758 1.25584 0.95708 0.94040 1.01332 1.69979 1.11238 1.50618 1.25213 0.86066 0.79936 0.79175 0.79725 1.20135 1.20364 1.18056 1.46411 1.15874 1.56557 1.17026 1.21405 0.81276 0.78095 0.90762 1.90597 1.51478 1.60898 1.43299 1.21646 0.98521 1.01675 0.94140 1.20768 0.94586 0.97129 0.94595 0.92463 1.21665 0.97436 0.97445 0.99384 1.21486 0.95973 0.99884 0.97963 1.21466 1.01618 0.97883 0.94060 1.22337 0.97697 0.98764 0.99680 1.21381 0.95492 0.93408 0.90629 0.90044 1.58873 1.62887 1.10353 1.05533 0.92656 0.92903 0.94951 0.93483 0.92159 0.92105 0.76373 0.88655 0.86912 0.92207 0.92973 0.92158 0.93046 0.91457 0.91263 0.90556 0.92466 0.83611 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.53 71.98 0.61 -4.47 16 2 C -0.12 -5.31 5.59 30.60 0.17 -5.14 16 3 C 0.24 11.48 1.89 44.25 0.08 11.56 16 4 H 0.03 1.45 4.73 -2.39 -0.01 1.44 16 5 C -0.53 -28.83 9.05 25.60 0.23 -28.60 16 6 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 7 C 0.03 1.91 5.47 84.66 0.46 2.37 16 8 N -0.93 -56.23 13.96 21.45 0.30 -55.93 16 9 Si 0.93 45.46 26.99 68.60 1.85 47.31 16 10 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.26 -12.35 6.82 99.48 0.68 -11.67 16 13 N -0.71 -28.03 5.03 -446.09 -2.24 -30.27 16 14 C 0.50 17.99 6.15 87.66 0.54 18.53 16 15 O -0.58 -24.53 11.11 -3.03 -0.03 -24.56 16 16 C -0.12 -3.15 5.09 29.85 0.15 -3.00 16 17 C -0.05 -1.22 1.49 -10.79 -0.02 -1.24 16 18 H 0.06 1.57 7.95 -2.39 -0.02 1.55 16 19 C -0.12 -3.16 4.94 30.60 0.15 -3.01 16 20 C -0.12 -2.47 5.92 30.59 0.18 -2.29 16 21 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 22 C -0.15 -2.14 5.49 30.59 0.17 -1.97 16 23 C 0.10 1.76 2.69 44.91 0.12 1.88 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 N -0.85 -12.66 8.40 -168.69 -1.42 -14.08 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 2.03 5.63 -2.39 -0.01 2.01 16 28 H 0.03 1.35 7.89 -2.39 -0.02 1.33 16 29 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.40 14.26 8.59 -92.71 -0.80 13.46 16 33 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.11 2.70 7.45 -2.39 -0.02 2.68 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.77 5.95 -2.39 -0.01 1.75 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.35 3.86 9.04 -89.69 -0.81 3.05 16 44 H 0.34 4.98 8.98 -89.69 -0.81 4.18 16 Total: -1.00 -64.80 335.03 0.05 -64.74 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -1.44 Total: 29.78 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 3.04 Total: -16.99 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -3.36 Total: -100.28 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.03 Total: -24.56 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.85 Total: 47.31 kcal Total: -64.80 0.05 -64.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310561331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.889 kcal (2) G-P(sol) polarization free energy of solvation -64.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds