Wall clock time and date at job start Mon Mar 30 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46836 * 2 1 4 4 H 1.09004 * 109.46958 * 304.99723 * 3 2 1 5 5 C 1.50705 * 109.46944 * 185.00350 * 3 2 1 6 6 H 1.07998 * 119.99701 * 240.00253 * 5 3 2 7 7 C 1.37868 * 120.00265 * 59.99659 * 5 3 2 8 8 N 1.31523 * 120.00057 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00201 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46923 * 60.00210 * 9 7 5 11 11 H 1.48500 * 109.47426 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47323 * 300.00483 * 9 7 5 13 13 N 1.46497 * 109.47357 * 65.00413 * 3 2 1 14 14 C 1.34780 * 119.99566 * 275.00168 * 13 3 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 H 1.09008 * 109.47017 * 54.99761 * 17 16 14 19 19 C 1.53001 * 109.47242 * 295.00231 * 17 16 14 20 20 C 1.52997 * 109.47242 * 179.97438 * 19 17 16 21 21 C 1.53006 * 109.47380 * 59.99720 * 20 19 17 22 22 C 1.53002 * 109.46654 * 300.00174 * 21 20 19 23 23 C 1.52994 * 109.47404 * 174.99684 * 17 16 14 24 24 H 1.09000 * 109.47476 * 300.00087 * 23 17 16 25 25 N 1.46908 * 109.46926 * 60.00332 * 23 17 16 26 26 H 1.08998 * 109.47399 * 299.99485 * 1 2 3 27 27 H 1.08994 * 109.47552 * 59.99989 * 1 2 3 28 28 H 1.09005 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47004 * 239.99852 * 2 1 3 30 30 H 1.09003 * 109.47388 * 120.00127 * 2 1 3 31 31 H 0.96994 * 120.00169 * 179.97438 * 8 7 5 32 32 H 0.96995 * 120.00423 * 94.99474 * 13 3 2 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 35 35 H 1.09008 * 109.46731 * 299.99706 * 19 17 16 36 36 H 1.08998 * 109.47430 * 59.99652 * 19 17 16 37 37 H 1.08998 * 109.46934 * 299.99660 * 20 19 17 38 38 H 1.09000 * 109.47325 * 179.97438 * 20 19 17 39 39 H 1.08992 * 109.47003 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.46692 * 59.99766 * 21 20 19 41 41 H 1.08995 * 109.46734 * 299.99283 * 22 21 20 42 42 H 1.09002 * 109.46264 * 180.02562 * 22 21 20 43 43 H 1.00900 * 110.99787 * 180.02562 * 25 23 17 44 44 H 1.00901 * 110.99576 * 303.94996 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0048 0.8814 -1.3819 10 1 6.5974 0.1475 -0.2350 11 1 6.3977 0.2179 -2.6510 12 1 6.4994 2.2816 -1.3822 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3394 2.6326 0.4342 16 6 0.0366 3.3386 2.6545 17 6 -1.3822 3.8952 2.5208 18 1 -2.0596 3.0954 2.2213 19 6 -1.3990 5.0005 1.4630 20 6 -2.8179 5.5567 1.3289 21 6 -3.2700 6.1305 2.6733 22 6 -3.2533 5.0251 3.7311 23 6 -1.8337 4.4691 3.8653 24 1 -1.8219 3.6817 4.6189 25 7 -0.9209 5.5470 4.2689 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8291 -0.0604 -2.9503 32 1 2.2719 2.1231 1.9977 33 1 0.0680 2.6145 3.4687 34 1 0.7280 4.1542 2.8666 35 1 -0.7216 5.8003 1.7625 36 1 -1.0773 4.5917 0.5052 37 1 -3.4949 4.7567 1.0292 38 1 -2.8298 6.3444 0.5756 39 1 -4.2811 6.5263 2.5779 40 1 -2.5930 6.9304 2.9730 41 1 -3.9303 4.2253 3.4313 42 1 -3.5758 5.4339 4.6887 43 1 -1.1977 5.9425 5.1550 44 1 0.0330 5.2197 4.3017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310561333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:34 Heat of formation + Delta-G solvation = -71.100305 kcal Electronic energy + Delta-G solvation = -21672.780345 eV Core-core repulsion = 18623.400709 eV Total energy + Delta-G solvation = -3049.379637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72286 -38.20828 -35.03857 -33.17494 -32.33573 -32.10068 -30.79727 -28.80653 -27.34528 -26.01330 -23.03856 -22.24831 -21.52705 -20.00040 -19.23153 -18.85447 -17.14097 -16.19248 -15.53245 -15.34575 -15.14144 -14.82699 -14.42323 -14.21811 -13.85467 -13.37528 -13.09713 -12.67404 -12.66498 -12.25068 -11.88340 -11.79689 -11.56367 -11.46320 -11.21413 -11.12792 -10.95589 -10.79517 -10.75825 -10.34267 -10.28069 -10.17204 -10.00092 -9.90147 -9.58473 -9.03035 -8.77922 -8.62600 -8.46803 -7.73491 -6.10206 -4.19623 3.26164 3.31677 3.32650 3.51197 4.15345 4.40370 4.46802 4.74811 4.89940 5.01835 5.20757 5.29297 5.35460 5.43114 5.54250 5.58544 5.63071 5.78363 5.84049 5.91012 5.96833 6.11705 6.20128 6.38576 6.41195 6.43353 6.44760 6.48253 6.68388 6.77980 6.83054 7.06551 7.11593 7.23104 7.38197 7.40613 7.53310 7.64749 7.77476 7.94005 8.21437 8.74314 8.81820 9.23346 9.48477 10.95007 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031762 B = 0.004237 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.337024 B = 6606.624227 C = 6856.947305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.712 5.712 14 C 0.501 3.499 15 O -0.545 6.545 16 C -0.143 4.143 17 C -0.059 4.059 18 H 0.077 0.923 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.110 4.110 22 C -0.110 4.110 23 C 0.094 3.906 24 H 0.030 0.970 25 N -0.840 5.840 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.020 0.980 29 H 0.098 0.902 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.335 0.665 44 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 7.615 12.671 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.360 5.360 14 C 0.286 3.714 15 O -0.424 6.424 16 C -0.183 4.183 17 C -0.078 4.078 18 H 0.095 0.905 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.017 4.017 24 H 0.048 0.952 25 N -0.372 5.372 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.147 0.853 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.848 7.835 11.115 16.790 hybrid contribution 1.591 -0.752 1.190 2.124 sum -8.257 7.083 12.305 16.424 Atomic orbital electron populations 1.21828 0.98357 0.97884 1.01248 1.21929 0.92601 0.99958 1.02118 1.18733 0.94023 0.89098 0.81263 0.93396 1.21213 0.90869 1.38962 1.06227 0.92248 1.24881 0.98510 0.94847 0.95412 1.69888 1.35163 1.37632 1.09315 0.86535 0.85002 0.78296 0.77419 1.20216 1.21145 1.20200 1.46515 1.14838 1.56235 1.18364 1.20328 0.82607 0.79201 0.89233 1.90629 1.51348 1.59664 1.40759 1.21791 0.98650 1.00620 0.97252 1.20880 0.94893 0.97946 0.94129 0.90493 1.21564 0.96341 0.97179 0.99665 1.21465 0.97511 0.99737 0.96462 1.21412 1.00085 0.98196 0.95042 1.21539 0.95458 0.98828 0.98962 1.21376 0.92839 0.91473 0.95984 0.95214 1.58753 1.05954 1.35760 1.36692 0.94270 0.93150 0.96040 0.88410 0.95217 0.92553 0.78213 0.90319 0.89492 0.91741 0.90083 0.92696 0.92671 0.93374 0.90932 0.91889 0.92714 0.85334 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.78 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.78 11.30 55.43 0.63 -24.16 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 13 N -0.71 -14.44 5.02 -54.93 -0.28 -14.72 16 14 C 0.50 9.49 6.11 -10.98 -0.07 9.42 16 15 O -0.54 -12.10 11.10 5.56 0.06 -12.03 16 16 C -0.14 -1.95 4.70 -27.88 -0.13 -2.08 16 17 C -0.06 -0.79 1.66 -90.62 -0.15 -0.94 16 18 H 0.08 1.16 7.96 -51.92 -0.41 0.75 16 19 C -0.11 -1.60 4.79 -26.73 -0.13 -1.73 16 20 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 21 C -0.11 -1.19 5.77 -26.73 -0.15 -1.34 16 22 C -0.11 -1.11 5.61 -26.70 -0.15 -1.26 16 23 C 0.09 0.99 3.09 -67.69 -0.21 0.78 16 24 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 25 N -0.84 -7.78 7.70 -4.64 -0.04 -7.81 16 26 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.80 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 32 H 0.39 6.84 8.54 -40.82 -0.35 6.49 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.07 6.83 -51.93 -0.35 0.71 16 35 H 0.06 0.94 7.60 -51.92 -0.39 0.54 16 36 H 0.08 1.46 5.95 -51.93 -0.31 1.15 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.82 7.60 -51.93 -0.39 0.42 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.33 2.52 9.04 -39.29 -0.36 2.16 16 44 H 0.34 2.99 7.15 -39.29 -0.28 2.71 16 LS Contribution 330.87 15.07 4.99 4.99 Total: -1.00 -29.00 330.87 -8.79 -37.78 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.60 Total: 11.16 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.53 Total: -10.80 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.31 Total: -46.69 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.06 Total: -12.03 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.00 -8.79 -37.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310561333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.318 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds