Wall clock time and date at job start Mon Mar 30 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46836 * 2 1 4 4 H 1.09004 * 109.46958 * 304.99723 * 3 2 1 5 5 C 1.50705 * 109.46944 * 185.00350 * 3 2 1 6 6 H 1.07998 * 119.99701 * 240.00253 * 5 3 2 7 7 C 1.37868 * 120.00265 * 59.99659 * 5 3 2 8 8 N 1.31523 * 120.00057 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00201 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46923 * 60.00210 * 9 7 5 11 11 H 1.48500 * 109.47426 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47323 * 300.00483 * 9 7 5 13 13 N 1.46497 * 109.47357 * 65.00413 * 3 2 1 14 14 C 1.34780 * 119.99566 * 275.00168 * 13 3 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 H 1.09008 * 109.47017 * 54.99761 * 17 16 14 19 19 C 1.53001 * 109.47242 * 295.00231 * 17 16 14 20 20 C 1.52997 * 109.47242 * 179.97438 * 19 17 16 21 21 C 1.53006 * 109.47380 * 59.99720 * 20 19 17 22 22 C 1.53002 * 109.46654 * 300.00174 * 21 20 19 23 23 C 1.52994 * 109.47404 * 174.99684 * 17 16 14 24 24 H 1.09000 * 109.47476 * 300.00087 * 23 17 16 25 25 N 1.46908 * 109.46926 * 60.00332 * 23 17 16 26 26 H 1.08998 * 109.47399 * 299.99485 * 1 2 3 27 27 H 1.08994 * 109.47552 * 59.99989 * 1 2 3 28 28 H 1.09005 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47004 * 239.99852 * 2 1 3 30 30 H 1.09003 * 109.47388 * 120.00127 * 2 1 3 31 31 H 0.96994 * 120.00169 * 179.97438 * 8 7 5 32 32 H 0.96995 * 120.00423 * 94.99474 * 13 3 2 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 35 35 H 1.09008 * 109.46731 * 299.99706 * 19 17 16 36 36 H 1.08998 * 109.47430 * 59.99652 * 19 17 16 37 37 H 1.08998 * 109.46934 * 299.99660 * 20 19 17 38 38 H 1.09000 * 109.47325 * 179.97438 * 20 19 17 39 39 H 1.08992 * 109.47003 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.46692 * 59.99766 * 21 20 19 41 41 H 1.08995 * 109.46734 * 299.99283 * 22 21 20 42 42 H 1.09002 * 109.46264 * 180.02562 * 22 21 20 43 43 H 1.00900 * 110.99787 * 180.02562 * 25 23 17 44 44 H 1.00901 * 110.99576 * 303.94996 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0048 0.8814 -1.3819 10 1 6.5974 0.1475 -0.2350 11 1 6.3977 0.2179 -2.6510 12 1 6.4994 2.2816 -1.3822 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3394 2.6326 0.4342 16 6 0.0366 3.3386 2.6545 17 6 -1.3822 3.8952 2.5208 18 1 -2.0596 3.0954 2.2213 19 6 -1.3990 5.0005 1.4630 20 6 -2.8179 5.5567 1.3289 21 6 -3.2700 6.1305 2.6733 22 6 -3.2533 5.0251 3.7311 23 6 -1.8337 4.4691 3.8653 24 1 -1.8219 3.6817 4.6189 25 7 -0.9209 5.5470 4.2689 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8291 -0.0604 -2.9503 32 1 2.2719 2.1231 1.9977 33 1 0.0680 2.6145 3.4687 34 1 0.7280 4.1542 2.8666 35 1 -0.7216 5.8003 1.7625 36 1 -1.0773 4.5917 0.5052 37 1 -3.4949 4.7567 1.0292 38 1 -2.8298 6.3444 0.5756 39 1 -4.2811 6.5263 2.5779 40 1 -2.5930 6.9304 2.9730 41 1 -3.9303 4.2253 3.4313 42 1 -3.5758 5.4339 4.6887 43 1 -1.1977 5.9425 5.1550 44 1 0.0330 5.2197 4.3017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310561333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:33 Heat of formation + Delta-G solvation = -90.509231 kcal Electronic energy + Delta-G solvation = -21673.621979 eV Core-core repulsion = 18623.400709 eV Total energy + Delta-G solvation = -3050.221271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05028 -39.48228 -36.87237 -34.30385 -34.03414 -33.32191 -32.51901 -29.80686 -29.03098 -27.35777 -24.94226 -23.32769 -22.70093 -21.62365 -20.93636 -19.83403 -18.82840 -17.58765 -17.14499 -16.60502 -16.44653 -16.27241 -15.86631 -15.33076 -15.07072 -14.60968 -14.51337 -14.48732 -13.92406 -13.57050 -13.34496 -13.17899 -13.05510 -12.98526 -12.68042 -12.61627 -12.56619 -12.21460 -12.17822 -12.01036 -11.74674 -11.56729 -11.36849 -11.05117 -11.01983 -10.98659 -10.52946 -10.28748 -9.51475 -9.36087 -8.14826 -6.32336 1.44570 1.46409 1.54111 1.99776 2.38171 2.76295 3.14355 3.69220 3.77348 3.91542 4.06188 4.18096 4.33141 4.42427 4.49660 4.56715 4.58005 4.58936 4.64280 4.73639 4.79221 4.81882 4.91926 5.06429 5.08547 5.15554 5.21441 5.27512 5.40802 5.43816 5.45976 5.47030 5.56952 5.60874 5.70798 5.73842 5.82292 5.98404 6.19988 6.40295 6.76902 6.77496 7.10749 7.35944 7.72218 8.90153 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031762 B = 0.004237 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.337024 B = 6606.624227 C = 6856.947305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.711 5.711 14 C 0.494 3.506 15 O -0.581 6.581 16 C -0.129 4.129 17 C -0.057 4.057 18 H 0.055 0.945 19 C -0.105 4.105 20 C -0.115 4.115 21 C -0.103 4.103 22 C -0.110 4.110 23 C 0.104 3.896 24 H 0.044 0.956 25 N -0.844 5.844 26 H 0.046 0.954 27 H 0.023 0.977 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.349 0.651 44 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 8.287 15.603 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.360 5.360 14 C 0.282 3.718 15 O -0.463 6.463 16 C -0.168 4.168 17 C -0.076 4.076 18 H 0.074 0.926 19 C -0.143 4.143 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.008 4.008 24 H 0.062 0.938 25 N -0.377 5.377 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.236 0.764 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.162 0.838 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.454 8.526 14.099 18.996 hybrid contribution 1.418 -0.923 0.227 1.707 sum -8.037 7.603 14.326 18.100 Atomic orbital electron populations 1.21656 0.96961 0.98939 1.00269 1.21774 0.93746 0.99351 1.01071 1.18284 0.93399 0.89047 0.81742 0.98795 1.21584 0.91653 1.38814 1.06643 0.91129 1.25772 1.03256 0.94424 0.95053 1.70051 1.37100 1.38443 1.09836 0.85448 0.79221 0.78425 0.77539 1.18875 1.21270 1.19697 1.46304 1.15948 1.56450 1.17291 1.21296 0.81481 0.78349 0.90684 1.90630 1.52283 1.60673 1.42672 1.21773 0.99143 1.01365 0.94561 1.20838 0.94257 0.96900 0.95611 0.92628 1.21446 0.97345 0.97500 0.98003 1.21463 0.96266 0.99411 0.98102 1.21351 1.00634 0.98338 0.93727 1.21563 0.95170 0.98459 0.99636 1.21229 0.93205 0.92186 0.94166 0.93801 1.58682 1.05992 1.35269 1.37794 0.93542 0.95768 0.93828 0.91292 0.94184 0.92688 0.76412 0.87396 0.87366 0.91651 0.94418 0.93663 0.92895 0.92143 0.90982 0.92188 0.90542 0.83760 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.51 71.98 0.61 -4.90 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.83 16 3 C 0.28 14.37 2.24 44.25 0.10 14.47 16 4 H -0.01 -0.36 7.58 -2.38 -0.02 -0.38 16 5 C -0.55 -29.16 8.73 25.60 0.22 -28.93 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.01 0.81 5.29 84.65 0.45 1.26 16 8 N -0.92 -52.96 11.30 21.45 0.24 -52.72 16 9 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 13 N -0.71 -28.79 5.02 -446.09 -2.24 -31.03 16 14 C 0.49 18.75 6.11 87.66 0.54 19.29 16 15 O -0.58 -26.91 11.10 -3.03 -0.03 -26.94 16 16 C -0.13 -3.26 4.70 29.85 0.14 -3.12 16 17 C -0.06 -1.44 1.66 -10.80 -0.02 -1.46 16 18 H 0.06 1.66 7.96 -2.38 -0.02 1.65 16 19 C -0.11 -3.08 4.79 30.59 0.15 -2.94 16 20 C -0.11 -2.91 5.92 30.60 0.18 -2.73 16 21 C -0.10 -2.02 5.77 30.60 0.18 -1.84 16 22 C -0.11 -1.91 5.61 30.61 0.17 -1.74 16 23 C 0.10 1.87 3.09 44.93 0.14 2.01 16 24 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 25 N -0.84 -12.78 7.70 -168.60 -1.30 -14.08 16 26 H 0.05 2.01 5.65 -2.39 -0.01 2.00 16 27 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 28 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.07 3.86 5.95 -2.39 -0.01 3.84 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.40 13.67 8.54 -92.71 -0.79 12.88 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.11 2.35 6.83 -2.39 -0.02 2.33 16 35 H 0.06 1.87 7.60 -2.38 -0.02 1.85 16 36 H 0.04 1.42 5.95 -2.39 -0.01 1.41 16 37 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.45 7.60 -2.39 -0.02 1.43 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.35 3.88 9.04 -89.69 -0.81 3.07 16 44 H 0.34 4.80 7.15 -89.69 -0.64 4.16 16 Total: -1.00 -65.60 330.87 0.48 -65.12 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -1.24 Total: 31.86 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 3.02 Total: -16.47 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -3.30 Total: -97.82 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.03 Total: -26.94 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -65.60 0.48 -65.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310561333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.390 kcal (2) G-P(sol) polarization free energy of solvation -65.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds