Wall clock time and date at job start Mon Mar 30 2020 05:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47459 * 2 1 4 4 C 1.50703 * 109.46755 * 240.00534 * 2 1 3 5 5 H 1.08001 * 119.99979 * 239.99532 * 4 2 1 6 6 C 1.37878 * 120.00331 * 59.99929 * 4 2 1 7 7 N 1.31522 * 119.99806 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00223 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47268 * 89.99808 * 8 6 4 10 10 H 1.48507 * 109.46964 * 209.99670 * 8 6 4 11 11 H 1.48495 * 109.46870 * 329.99462 * 8 6 4 12 12 C 1.53001 * 109.47755 * 120.00573 * 2 1 3 13 13 N 1.46504 * 109.46710 * 299.99892 * 12 2 1 14 14 C 1.34774 * 119.99782 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99939 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00015 * 179.72210 * 14 13 12 17 17 H 1.09004 * 110.01256 * 333.91293 * 16 14 13 18 18 C 1.54259 * 110.03149 * 212.51886 * 16 14 13 19 19 C 1.54891 * 104.19484 * 217.10639 * 18 16 14 20 20 C 1.54887 * 102.74951 * 37.94357 * 19 18 16 21 21 C 1.53879 * 110.02818 * 95.35453 * 16 14 13 22 22 H 1.09007 * 110.02729 * 238.56729 * 21 16 14 23 23 C 1.52997 * 110.03227 * 359.97438 * 21 16 14 24 24 N 1.46907 * 109.46709 * 185.13086 * 23 21 16 25 25 H 1.09007 * 109.46682 * 299.99478 * 1 2 3 26 26 H 1.08993 * 109.47614 * 59.99305 * 1 2 3 27 27 H 1.08999 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47796 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47163 * 300.00893 * 3 2 1 30 30 H 1.09002 * 109.46899 * 60.00087 * 3 2 1 31 31 H 0.96996 * 119.99791 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.46971 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.46927 * 59.99291 * 12 2 1 34 34 H 0.97002 * 120.00143 * 359.97438 * 13 12 2 35 35 H 1.08995 * 110.48950 * 335.78333 * 18 16 14 36 36 H 1.09003 * 110.48608 * 98.29406 * 18 16 14 37 37 H 1.09002 * 110.75943 * 156.26160 * 19 18 16 38 38 H 1.09001 * 110.75381 * 279.62646 * 19 18 16 39 39 H 1.09000 * 110.48448 * 80.73420 * 20 19 18 40 40 H 1.09003 * 110.48624 * 203.37895 * 20 19 18 41 41 H 1.08993 * 109.47535 * 305.12714 * 23 21 16 42 42 H 1.08997 * 109.46901 * 65.13719 * 23 21 16 43 43 H 1.00902 * 110.99965 * 180.02562 * 24 23 21 44 44 H 1.00895 * 111.00021 * 303.96117 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9425 0.8299 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 1.3424 -2.1614 -4.4121 10 1 2.4862 -0.1410 -5.1125 11 1 3.6290 -1.7580 -3.7125 12 6 2.0401 -0.7214 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8771 -0.4916 3.6694 15 8 2.5737 -1.4782 3.7805 16 6 1.3800 0.2224 4.9000 17 1 1.1944 1.2722 4.6728 18 6 2.4173 0.1027 6.0355 19 6 1.5613 -0.0525 7.3170 20 6 0.3888 -0.9445 6.8389 21 6 0.0903 -0.4436 5.4108 22 1 -0.7219 0.2831 5.4322 23 6 -0.2839 -1.6216 4.5090 24 7 -1.5786 -2.1710 4.9332 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7079 1.1611 -3.4843 32 1 3.1301 -0.7217 1.2488 33 1 1.6767 -1.7490 1.2491 34 1 0.9944 0.7581 2.3565 35 1 3.0453 -0.7757 5.8875 36 1 3.0291 1.0032 6.0897 37 1 2.1294 -0.5499 8.1032 38 1 1.1958 0.9164 7.6571 39 1 0.6893 -1.9921 6.8207 40 1 -0.4813 -0.8074 7.4810 41 1 -0.3548 -1.2805 3.4763 42 1 0.4810 -2.3944 4.5849 43 1 -1.8480 -2.9512 4.3529 44 1 -1.5579 -2.4350 5.9068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315704113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:01 Heat of formation + Delta-G solvation = -64.696613 kcal Electronic energy + Delta-G solvation = -21787.302580 eV Core-core repulsion = 18738.200628 eV Total energy + Delta-G solvation = -3049.101952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.23601 -37.60455 -36.15783 -34.08225 -33.24882 -30.99181 -29.38456 -28.67320 -25.72331 -25.61506 -24.89381 -23.65396 -21.39139 -20.63034 -19.09370 -18.66039 -16.90513 -16.29807 -15.86819 -15.53133 -15.19237 -14.73302 -14.63615 -14.17671 -13.94471 -13.36992 -13.04554 -12.86978 -12.64883 -12.57050 -12.21025 -11.63238 -11.41288 -11.19674 -11.14420 -11.08767 -10.86068 -10.77218 -10.69995 -10.68223 -10.60555 -10.37650 -10.19943 -9.62978 -9.49326 -9.17390 -8.78343 -8.71014 -8.42930 -8.28026 -6.01944 -4.12081 3.05831 3.28039 3.35106 3.38797 3.76912 4.35792 4.40400 4.46601 4.62759 4.89341 5.24735 5.25500 5.28256 5.31349 5.45810 5.48594 5.54209 5.61789 5.79495 5.85720 5.91998 5.99959 6.12784 6.21519 6.31171 6.33032 6.33959 6.51796 6.78424 6.83572 6.94478 7.02124 7.05354 7.09302 7.36180 7.39403 7.56173 7.69510 8.01324 8.07839 8.17175 8.38906 8.73606 8.88767 9.53736 10.99386 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031614 B = 0.004437 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.466241 B = 6309.071610 C = 6568.930295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.717 5.717 14 C 0.513 3.487 15 O -0.554 6.554 16 C -0.112 4.112 17 H 0.089 0.911 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.074 4.074 22 H 0.086 0.914 23 C 0.054 3.946 24 N -0.849 5.849 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.025 0.975 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.398 0.602 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.342 0.658 44 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.614 0.126 16.241 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.010 3.990 13 N -0.367 5.367 14 C 0.299 3.701 15 O -0.433 6.433 16 C -0.134 4.134 17 H 0.107 0.893 18 C -0.150 4.150 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.093 4.093 22 H 0.104 0.896 23 C -0.077 4.077 24 N -0.378 5.378 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.233 0.767 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.154 0.846 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.476 0.258 15.930 16.124 hybrid contribution 0.573 -0.908 -0.863 1.377 sum -1.903 -0.650 15.068 15.201 Atomic orbital electron populations 1.21816 0.97703 0.99098 1.00110 1.18352 0.92804 0.92745 0.90583 1.21823 0.98533 0.98368 1.00078 1.20982 1.31467 1.12057 0.89930 0.92535 1.24878 0.94877 0.94905 0.98826 1.69807 1.36662 1.22734 1.23205 0.86581 0.79308 0.79401 0.82639 1.20724 1.21257 1.19934 1.21685 0.98046 0.95676 0.83636 1.46425 1.52491 1.31737 1.06063 1.20366 0.80101 0.84847 0.84773 1.90638 1.38895 1.26883 1.86856 1.22014 0.96598 1.00329 0.94437 0.89291 1.22351 0.97003 1.03097 0.92587 1.22464 0.96542 0.99694 0.97231 1.22437 0.98195 0.99627 0.95394 1.21677 0.95622 0.97371 0.94654 0.89565 1.22140 0.89853 0.96232 0.99440 1.58763 1.31344 1.39850 1.07813 0.97458 0.89627 0.95550 0.95495 0.89620 0.97490 0.93017 0.92860 0.92975 0.76710 0.89683 0.91494 0.91489 0.91470 0.91707 0.91418 0.90284 0.94240 0.84638 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.15 0.30 -2.62 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.26 8.01 -34.44 -0.28 -13.54 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.61 9.35 55.43 0.52 -23.09 16 8 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 13 N -0.72 -12.63 4.51 -60.29 -0.27 -12.91 16 14 C 0.51 8.67 4.66 -10.99 -0.05 8.62 16 15 O -0.55 -11.22 14.97 5.55 0.08 -11.13 16 16 C -0.11 -1.43 3.29 -90.65 -0.30 -1.73 16 17 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.11 -1.32 6.32 -25.08 -0.16 -1.48 16 19 C -0.12 -1.15 6.91 -24.74 -0.17 -1.32 16 20 C -0.12 -1.19 5.57 -25.08 -0.14 -1.33 16 21 C -0.07 -0.87 3.15 -89.50 -0.28 -1.15 16 22 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 23 C 0.05 0.73 4.96 -3.82 -0.02 0.71 16 24 N -0.85 -9.75 9.62 -10.37 -0.10 -9.85 16 25 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 26 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 30 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.40 6.46 6.16 -40.82 -0.25 6.21 16 35 H 0.08 1.19 6.91 -51.93 -0.36 0.83 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.69 7.76 -51.93 -0.40 0.29 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.25 6.88 -51.93 -0.36 0.89 16 42 H 0.04 0.61 7.05 -51.93 -0.37 0.25 16 43 H 0.34 3.67 9.08 -39.29 -0.36 3.31 16 44 H 0.33 3.23 8.23 -39.29 -0.32 2.91 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -28.06 333.89 -8.27 -36.33 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -7.53 Total: 10.71 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.98 Total: -10.83 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.15 Total: -45.85 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.06 -8.27 -36.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315704113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.362 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds