Wall clock time and date at job start Mon Mar 30 2020 05:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47459 * 2 1 4 4 C 1.50703 * 109.46755 * 240.00534 * 2 1 3 5 5 H 1.08001 * 119.99979 * 239.99532 * 4 2 1 6 6 C 1.37878 * 120.00331 * 59.99929 * 4 2 1 7 7 N 1.31522 * 119.99806 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00223 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47268 * 89.99808 * 8 6 4 10 10 H 1.48507 * 109.46964 * 209.99670 * 8 6 4 11 11 H 1.48495 * 109.46870 * 329.99462 * 8 6 4 12 12 C 1.53001 * 109.47755 * 120.00573 * 2 1 3 13 13 N 1.46504 * 109.46710 * 299.99892 * 12 2 1 14 14 C 1.34774 * 119.99782 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99939 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00015 * 179.72210 * 14 13 12 17 17 H 1.09004 * 110.01256 * 333.91293 * 16 14 13 18 18 C 1.54259 * 110.03149 * 212.51886 * 16 14 13 19 19 C 1.54891 * 104.19484 * 217.10639 * 18 16 14 20 20 C 1.54887 * 102.74951 * 37.94357 * 19 18 16 21 21 C 1.53879 * 110.02818 * 95.35453 * 16 14 13 22 22 H 1.09007 * 110.02729 * 238.56729 * 21 16 14 23 23 C 1.52997 * 110.03227 * 359.97438 * 21 16 14 24 24 N 1.46907 * 109.46709 * 185.13086 * 23 21 16 25 25 H 1.09007 * 109.46682 * 299.99478 * 1 2 3 26 26 H 1.08993 * 109.47614 * 59.99305 * 1 2 3 27 27 H 1.08999 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47796 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47163 * 300.00893 * 3 2 1 30 30 H 1.09002 * 109.46899 * 60.00087 * 3 2 1 31 31 H 0.96996 * 119.99791 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.46971 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.46927 * 59.99291 * 12 2 1 34 34 H 0.97002 * 120.00143 * 359.97438 * 13 12 2 35 35 H 1.08995 * 110.48950 * 335.78333 * 18 16 14 36 36 H 1.09003 * 110.48608 * 98.29406 * 18 16 14 37 37 H 1.09002 * 110.75943 * 156.26160 * 19 18 16 38 38 H 1.09001 * 110.75381 * 279.62646 * 19 18 16 39 39 H 1.09000 * 110.48448 * 80.73420 * 20 19 18 40 40 H 1.09003 * 110.48624 * 203.37895 * 20 19 18 41 41 H 1.08993 * 109.47535 * 305.12714 * 23 21 16 42 42 H 1.08997 * 109.46901 * 65.13719 * 23 21 16 43 43 H 1.00902 * 110.99965 * 180.02562 * 24 23 21 44 44 H 1.00895 * 111.00021 * 303.96117 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9425 0.8299 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 1.3424 -2.1614 -4.4121 10 1 2.4862 -0.1410 -5.1125 11 1 3.6290 -1.7580 -3.7125 12 6 2.0401 -0.7214 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8771 -0.4916 3.6694 15 8 2.5737 -1.4782 3.7805 16 6 1.3800 0.2224 4.9000 17 1 1.1944 1.2722 4.6728 18 6 2.4173 0.1027 6.0355 19 6 1.5613 -0.0525 7.3170 20 6 0.3888 -0.9445 6.8389 21 6 0.0903 -0.4436 5.4108 22 1 -0.7219 0.2831 5.4322 23 6 -0.2839 -1.6216 4.5090 24 7 -1.5786 -2.1710 4.9332 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7079 1.1611 -3.4843 32 1 3.1301 -0.7217 1.2488 33 1 1.6767 -1.7490 1.2491 34 1 0.9944 0.7581 2.3565 35 1 3.0453 -0.7757 5.8875 36 1 3.0291 1.0032 6.0897 37 1 2.1294 -0.5499 8.1032 38 1 1.1958 0.9164 7.6571 39 1 0.6893 -1.9921 6.8207 40 1 -0.4813 -0.8074 7.4810 41 1 -0.3548 -1.2805 3.4763 42 1 0.4810 -2.3944 4.5849 43 1 -1.8480 -2.9512 4.3529 44 1 -1.5579 -2.4350 5.9068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315704113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:00 Heat of formation + Delta-G solvation = -83.099236 kcal Electronic energy + Delta-G solvation = -21788.100577 eV Core-core repulsion = 18738.200628 eV Total energy + Delta-G solvation = -3049.899949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48709 -38.92218 -37.78003 -35.10351 -34.91181 -32.80128 -30.46121 -29.58619 -27.57760 -27.45892 -26.66246 -24.68946 -22.67558 -21.50970 -20.62867 -20.21474 -18.22648 -17.65769 -17.35661 -16.74592 -16.63974 -16.36184 -15.89888 -15.43999 -15.12547 -14.87333 -14.50259 -14.36345 -14.03845 -13.89595 -13.59647 -13.20753 -13.10620 -12.70400 -12.69508 -12.55520 -12.27523 -12.14996 -12.05190 -11.93092 -11.67858 -11.59686 -11.51216 -11.45575 -11.25211 -10.77154 -10.61345 -10.40658 -9.94400 -9.65705 -8.03192 -6.19115 1.41238 1.44120 1.52288 1.71133 2.33706 2.50373 3.20242 3.40861 3.54257 3.68388 3.91788 4.20745 4.27872 4.39964 4.45757 4.48014 4.53661 4.54364 4.65385 4.70472 4.73988 4.87002 4.95373 4.97863 5.04630 5.06181 5.10650 5.18012 5.21795 5.25685 5.35098 5.37138 5.50513 5.61410 5.65907 5.66039 6.12538 6.13715 6.20589 6.42438 6.54384 6.70610 6.84881 7.35657 7.48622 8.95643 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031614 B = 0.004437 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.466241 B = 6309.071610 C = 6568.930295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.712 5.712 14 C 0.513 3.487 15 O -0.591 6.591 16 C -0.107 4.107 17 H 0.114 0.886 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.070 4.070 22 H 0.101 0.899 23 C 0.060 3.940 24 N -0.844 5.844 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.015 0.985 28 H 0.017 0.983 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.407 0.593 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.012 0.988 43 H 0.345 0.655 44 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 1.251 18.079 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.026 3.974 13 N -0.363 5.363 14 C 0.301 3.699 15 O -0.472 6.472 16 C -0.129 4.129 17 H 0.132 0.868 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.089 4.089 22 H 0.119 0.881 23 C -0.071 4.071 24 N -0.375 5.375 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.244 0.756 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.157 0.843 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.375 1.397 17.790 18.161 hybrid contribution 0.846 -1.300 -1.423 2.105 sum -2.529 0.097 16.366 16.561 Atomic orbital electron populations 1.21639 0.97098 0.98465 1.00324 1.18349 0.93201 0.93051 0.90308 1.21661 0.97865 0.97822 1.00415 1.21260 1.31757 1.12122 0.91660 0.93971 1.25443 0.95132 0.95569 1.00921 1.69908 1.36925 1.23239 1.23613 0.85772 0.78623 0.78527 0.79961 1.20499 1.20705 1.20160 1.21197 0.96731 0.94857 0.84590 1.46267 1.52723 1.31870 1.05409 1.21144 0.78973 0.84306 0.85449 1.90625 1.40528 1.28680 1.87371 1.22134 0.97352 1.01094 0.92353 0.86808 1.22371 0.96940 1.02463 0.93485 1.22460 0.95719 1.00753 0.96090 1.22432 0.99409 0.99041 0.94438 1.21719 0.95277 0.96729 0.95222 0.88078 1.21974 0.90003 0.96386 0.98731 1.58751 1.29780 1.40155 1.08781 0.94567 0.91906 0.96561 0.96366 0.91891 0.94403 0.93005 0.94696 0.94879 0.75586 0.92571 0.90096 0.90522 0.89298 0.92914 0.89162 0.92750 0.97012 0.84299 0.83901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 4 C -0.53 -28.31 8.01 25.60 0.21 -28.11 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.55 5.15 84.65 0.44 1.98 16 7 N -0.90 -48.09 9.35 21.45 0.20 -47.89 16 8 Si 0.94 42.88 29.54 68.60 2.03 44.90 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 C 0.15 6.50 4.50 86.38 0.39 6.89 16 13 N -0.71 -24.70 4.51 -463.06 -2.09 -26.79 16 14 C 0.51 17.15 4.66 87.66 0.41 17.55 16 15 O -0.59 -24.51 14.97 -3.04 -0.05 -24.56 16 16 C -0.11 -2.53 3.29 -10.82 -0.04 -2.56 16 17 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 18 C -0.11 -2.46 6.32 31.67 0.20 -2.26 16 19 C -0.11 -1.75 6.91 31.89 0.22 -1.53 16 20 C -0.12 -1.97 5.57 31.67 0.18 -1.80 16 21 C -0.07 -1.48 3.15 -10.07 -0.03 -1.52 16 22 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 23 C 0.06 1.60 4.96 86.30 0.43 2.02 16 24 N -0.84 -18.18 9.62 -186.72 -1.80 -19.98 16 25 H 0.04 1.37 6.86 -2.38 -0.02 1.35 16 26 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 27 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 30 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 31 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 32 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.03 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.41 12.47 6.16 -92.71 -0.57 11.90 16 35 H 0.06 1.55 6.91 -2.39 -0.02 1.53 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.05 1.04 7.76 -2.39 -0.02 1.02 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.05 1.70 6.88 -2.39 -0.02 1.69 16 42 H 0.01 0.37 7.05 -2.39 -0.02 0.35 16 43 H 0.34 7.12 9.08 -89.69 -0.81 6.30 16 44 H 0.35 6.01 8.23 -89.70 -0.74 5.28 16 Total: -1.00 -61.56 333.89 0.71 -60.85 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -1.12 Total: 29.88 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 3.53 Total: -16.42 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -3.68 Total: -94.66 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -61.56 0.71 -60.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315704113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.247 kcal (2) G-P(sol) polarization free energy of solvation -61.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds