Wall clock time and date at job start Mon Mar 30 2020 05:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99493 * 2 1 4 4 C 1.50700 * 110.01547 * 58.48285 * 3 2 1 5 5 O 1.21282 * 120.00129 * 213.78379 * 4 3 2 6 6 N 1.34783 * 119.99901 * 33.78683 * 4 3 2 7 7 C 1.46505 * 119.99429 * 174.75613 * 6 4 3 8 8 C 1.52998 * 109.46633 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47310 * 300.00112 * 8 7 6 10 10 C 1.53003 * 109.47125 * 59.99843 * 8 7 6 11 11 C 1.50706 * 109.47183 * 179.97438 * 8 7 6 12 12 H 1.08000 * 119.99650 * 359.97438 * 11 8 7 13 13 C 1.37870 * 120.00034 * 180.02562 * 11 8 7 14 14 N 1.31520 * 120.00305 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00067 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47203 * 59.99985 * 15 13 11 17 17 H 1.48504 * 109.47450 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47021 * 300.00100 * 15 13 11 19 19 C 1.54262 * 110.07047 * 179.89943 * 3 2 1 20 20 C 1.54890 * 104.19757 * 95.69955 * 19 3 2 21 21 C 1.54887 * 102.74749 * 37.93844 * 20 19 3 22 22 C 1.53869 * 110.03451 * 297.09212 * 3 2 1 23 23 H 1.09000 * 109.47327 * 295.78314 * 1 2 3 24 24 H 1.08994 * 109.47816 * 55.79136 * 1 2 3 25 25 H 1.09010 * 109.46622 * 175.79058 * 1 2 3 26 26 H 1.00899 * 111.00367 * 123.95358 * 2 1 3 27 27 H 0.96997 * 120.00111 * 354.74969 * 6 4 3 28 28 H 1.08994 * 109.47374 * 59.99912 * 7 6 4 29 29 H 1.09003 * 109.46998 * 299.99569 * 7 6 4 30 30 H 1.08995 * 109.47475 * 59.99769 * 9 8 7 31 31 H 1.08998 * 109.47360 * 180.02562 * 9 8 7 32 32 H 1.09004 * 109.46938 * 299.99936 * 9 8 7 33 33 H 1.09004 * 109.47297 * 60.00331 * 10 8 7 34 34 H 1.08998 * 109.46903 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.47450 * 299.99882 * 10 8 7 36 36 H 0.96998 * 119.99980 * 179.97438 * 14 13 11 37 37 H 1.09008 * 110.48473 * 214.37643 * 19 3 2 38 38 H 1.09001 * 110.48790 * 337.01972 * 19 3 2 39 39 H 1.09005 * 110.75135 * 279.62698 * 20 19 3 40 40 H 1.09000 * 110.91833 * 156.32846 * 20 19 3 41 41 H 1.09002 * 110.49210 * 203.37908 * 21 20 19 42 42 H 1.09001 * 110.48508 * 80.73819 * 21 20 19 43 43 H 1.09005 * 110.03063 * 359.95054 * 22 3 2 44 44 H 1.08996 * 110.03525 * 121.38458 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.4891 2.1183 1.2071 5 8 1.2602 3.3070 1.1328 6 7 1.2907 1.4651 2.3693 7 6 0.9093 2.2097 3.5720 8 6 0.7475 1.2385 4.7430 9 6 -0.3401 0.2151 4.4104 10 6 2.0717 0.5130 4.9907 11 6 0.3558 2.0043 5.9805 12 1 0.2348 3.0766 5.9361 13 6 0.1530 1.3362 7.1693 14 7 0.3008 0.0305 7.2234 15 14 -0.3332 2.2854 8.7029 16 1 -1.6188 2.9889 8.4629 17 1 -0.4901 1.3427 9.8396 18 1 0.7221 3.2791 9.0254 19 6 3.5378 1.3466 0.0025 20 6 3.9225 1.4887 -1.4911 21 6 2.8682 2.4916 -2.0217 22 6 1.5696 2.0995 -1.2870 23 1 -0.3634 0.4470 0.9253 24 1 -0.3634 0.5777 -0.8498 25 1 -0.3633 -1.0250 -0.0754 26 1 1.8307 -0.5261 0.7813 27 1 1.4003 0.5022 2.4093 28 1 -0.0342 2.7261 3.3957 29 1 1.6840 2.9390 3.8087 30 1 -0.0564 -0.3388 3.5156 31 1 -0.4557 -0.4766 5.2448 32 1 -1.2835 0.7319 4.2340 33 1 2.8466 1.2420 5.2277 34 1 1.9565 -0.1786 5.8252 35 1 2.3555 -0.0409 4.0958 36 1 0.1585 -0.4395 8.0600 37 1 3.9318 2.1835 0.5792 38 1 3.9034 0.4008 0.4024 39 1 3.8373 0.5309 -2.0046 40 1 4.9288 1.8939 -1.5969 41 1 2.7450 2.3815 -3.0991 42 1 3.1541 3.5134 -1.7719 43 1 0.9731 1.4349 -1.9120 44 1 0.9968 2.9930 -1.0385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315934824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:17 Heat of formation + Delta-G solvation = -48.964055 kcal Electronic energy + Delta-G solvation = -22080.046337 eV Core-core repulsion = 19031.626600 eV Total energy + Delta-G solvation = -3048.419737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43236 -37.53557 -36.25647 -34.53503 -33.04800 -30.84491 -28.99311 -28.16595 -25.79262 -25.69659 -24.94009 -24.47058 -21.61234 -20.82139 -19.09336 -18.74314 -17.45624 -15.93203 -15.87116 -15.63277 -15.03604 -14.77192 -14.74322 -14.08789 -13.55567 -13.25941 -13.18680 -12.95333 -12.65829 -12.28251 -12.17420 -11.62004 -11.45393 -11.31569 -11.21830 -11.11701 -10.96887 -10.95571 -10.86636 -10.76027 -10.53067 -10.43363 -10.24861 -9.95744 -9.68999 -9.38734 -8.85712 -8.49733 -8.35989 -8.35683 -6.05647 -4.15997 2.94497 3.27668 3.32097 3.35304 3.59276 4.14474 4.37264 4.51356 4.57969 4.92710 5.21038 5.21162 5.28011 5.44968 5.48740 5.51205 5.66404 5.70723 5.80487 5.89918 5.96045 6.01868 6.04146 6.17295 6.19499 6.26793 6.34416 6.44039 6.71724 6.75114 6.78391 6.89915 6.95643 6.97704 7.19041 7.29561 7.50030 7.65119 7.95550 7.97781 8.10157 8.33971 8.61656 8.84234 9.50008 10.95708 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035250 B = 0.004567 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.128969 B = 6130.026672 C = 6278.409845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.672 5.672 3 C 0.095 3.905 4 C 0.482 3.518 5 O -0.547 6.547 6 N -0.717 5.717 7 C 0.131 3.869 8 C 0.056 3.944 9 C -0.129 4.129 10 C -0.130 4.130 11 C -0.507 4.507 12 H 0.056 0.944 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.106 4.106 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.107 4.107 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.342 0.658 27 H 0.393 0.607 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.003 0.997 31 H 0.086 0.914 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.086 0.914 35 H 0.004 0.996 36 H 0.261 0.739 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.320 -1.992 -14.602 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.305 5.305 3 C 0.000 4.000 4 C 0.265 3.735 5 O -0.425 6.425 6 N -0.368 5.368 7 C 0.009 3.991 8 C 0.056 3.944 9 C -0.186 4.186 10 C -0.188 4.188 11 C -0.546 4.546 12 H 0.075 0.925 13 C -0.134 4.134 14 N -0.524 5.524 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.144 4.144 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.145 4.145 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.161 0.839 27 H 0.229 0.771 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.022 0.978 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.023 0.977 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.182 -1.353 -15.154 15.778 hybrid contribution -0.484 0.270 1.966 2.042 sum 3.698 -1.083 -13.188 13.739 Atomic orbital electron populations 1.22398 0.87323 1.02489 1.01520 1.60694 1.08408 1.11855 1.49528 1.21973 0.96304 0.88115 0.93569 1.21528 0.78119 0.88497 0.85346 1.90637 1.51550 1.15771 1.84497 1.46403 1.69046 1.11349 1.10047 1.21721 0.98817 0.95190 0.83376 1.18351 0.92964 0.92005 0.91110 1.21818 0.97879 0.99967 0.98984 1.21827 0.96982 1.00176 0.99773 1.20931 1.46938 0.93613 0.93087 0.92546 1.24872 0.94975 0.94897 0.98689 1.69788 1.49386 1.06832 1.26421 0.86624 0.79153 0.79680 0.82354 1.20286 1.21282 1.20271 1.22342 0.91482 1.02539 0.98024 1.22416 0.98345 0.99676 0.94832 1.22309 0.94800 0.99293 0.99352 1.22183 0.98431 1.00205 0.93656 0.94603 0.91293 0.90923 0.83944 0.77119 0.92789 0.92847 0.97769 0.89518 0.95493 0.95430 0.89515 0.97692 0.92915 0.90856 0.90508 0.90888 0.91652 0.91636 0.91571 0.90560 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.91 60.06 0.59 0.74 16 2 N -0.67 -8.02 6.18 -107.21 -0.66 -8.68 16 3 C 0.09 1.27 0.81 -131.64 -0.11 1.17 16 4 C 0.48 8.39 5.47 -10.98 -0.06 8.33 16 5 O -0.55 -11.52 15.57 5.56 0.09 -11.43 16 6 N -0.72 -12.70 4.01 -60.29 -0.24 -12.94 16 7 C 0.13 2.80 4.51 -4.04 -0.02 2.78 16 8 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 9 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 10 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 11 C -0.51 -13.23 8.01 -34.44 -0.28 -13.51 16 12 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 13 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 14 N -0.89 -23.38 9.35 55.43 0.52 -22.86 16 15 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.11 -1.26 6.04 -25.07 -0.15 -1.42 16 20 C -0.12 -1.16 6.91 -24.74 -0.17 -1.33 16 21 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 22 C -0.11 -1.36 5.43 -25.62 -0.14 -1.50 16 23 H 0.04 0.51 6.51 -51.93 -0.34 0.17 16 24 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 25 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 26 H 0.34 3.88 7.41 -39.29 -0.29 3.59 16 27 H 0.39 6.35 4.45 -40.82 -0.18 6.17 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 31 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 35 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 36 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.07 0.97 7.85 -51.92 -0.41 0.56 16 38 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.90 6.61 -51.93 -0.34 0.55 16 44 H 0.08 1.21 6.71 -51.93 -0.35 0.86 16 LS Contribution 330.74 15.07 4.98 4.98 Total: -1.00 -27.73 330.74 -7.75 -35.48 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.34 Total: 8.30 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.07 Total: -8.47 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.39 Total: -44.48 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.73 -7.75 -35.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315934824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.484 kcal (2) G-P(sol) polarization free energy of solvation -27.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds