Wall clock time and date at job start Mon Mar 30 2020 05:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99493 * 2 1 4 4 C 1.50700 * 110.01547 * 58.48285 * 3 2 1 5 5 O 1.21282 * 120.00129 * 213.78379 * 4 3 2 6 6 N 1.34783 * 119.99901 * 33.78683 * 4 3 2 7 7 C 1.46505 * 119.99429 * 174.75613 * 6 4 3 8 8 C 1.52998 * 109.46633 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47310 * 300.00112 * 8 7 6 10 10 C 1.53003 * 109.47125 * 59.99843 * 8 7 6 11 11 C 1.50706 * 109.47183 * 179.97438 * 8 7 6 12 12 H 1.08000 * 119.99650 * 359.97438 * 11 8 7 13 13 C 1.37870 * 120.00034 * 180.02562 * 11 8 7 14 14 N 1.31520 * 120.00305 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00067 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47203 * 59.99985 * 15 13 11 17 17 H 1.48504 * 109.47450 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47021 * 300.00100 * 15 13 11 19 19 C 1.54262 * 110.07047 * 179.89943 * 3 2 1 20 20 C 1.54890 * 104.19757 * 95.69955 * 19 3 2 21 21 C 1.54887 * 102.74749 * 37.93844 * 20 19 3 22 22 C 1.53869 * 110.03451 * 297.09212 * 3 2 1 23 23 H 1.09000 * 109.47327 * 295.78314 * 1 2 3 24 24 H 1.08994 * 109.47816 * 55.79136 * 1 2 3 25 25 H 1.09010 * 109.46622 * 175.79058 * 1 2 3 26 26 H 1.00899 * 111.00367 * 123.95358 * 2 1 3 27 27 H 0.96997 * 120.00111 * 354.74969 * 6 4 3 28 28 H 1.08994 * 109.47374 * 59.99912 * 7 6 4 29 29 H 1.09003 * 109.46998 * 299.99569 * 7 6 4 30 30 H 1.08995 * 109.47475 * 59.99769 * 9 8 7 31 31 H 1.08998 * 109.47360 * 180.02562 * 9 8 7 32 32 H 1.09004 * 109.46938 * 299.99936 * 9 8 7 33 33 H 1.09004 * 109.47297 * 60.00331 * 10 8 7 34 34 H 1.08998 * 109.46903 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.47450 * 299.99882 * 10 8 7 36 36 H 0.96998 * 119.99980 * 179.97438 * 14 13 11 37 37 H 1.09008 * 110.48473 * 214.37643 * 19 3 2 38 38 H 1.09001 * 110.48790 * 337.01972 * 19 3 2 39 39 H 1.09005 * 110.75135 * 279.62698 * 20 19 3 40 40 H 1.09000 * 110.91833 * 156.32846 * 20 19 3 41 41 H 1.09002 * 110.49210 * 203.37908 * 21 20 19 42 42 H 1.09001 * 110.48508 * 80.73819 * 21 20 19 43 43 H 1.09005 * 110.03063 * 359.95054 * 22 3 2 44 44 H 1.08996 * 110.03525 * 121.38458 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.4891 2.1183 1.2071 5 8 1.2602 3.3070 1.1328 6 7 1.2907 1.4651 2.3693 7 6 0.9093 2.2097 3.5720 8 6 0.7475 1.2385 4.7430 9 6 -0.3401 0.2151 4.4104 10 6 2.0717 0.5130 4.9907 11 6 0.3558 2.0043 5.9805 12 1 0.2348 3.0766 5.9361 13 6 0.1530 1.3362 7.1693 14 7 0.3008 0.0305 7.2234 15 14 -0.3332 2.2854 8.7029 16 1 -1.6188 2.9889 8.4629 17 1 -0.4901 1.3427 9.8396 18 1 0.7221 3.2791 9.0254 19 6 3.5378 1.3466 0.0025 20 6 3.9225 1.4887 -1.4911 21 6 2.8682 2.4916 -2.0217 22 6 1.5696 2.0995 -1.2870 23 1 -0.3634 0.4470 0.9253 24 1 -0.3634 0.5777 -0.8498 25 1 -0.3633 -1.0250 -0.0754 26 1 1.8307 -0.5261 0.7813 27 1 1.4003 0.5022 2.4093 28 1 -0.0342 2.7261 3.3957 29 1 1.6840 2.9390 3.8087 30 1 -0.0564 -0.3388 3.5156 31 1 -0.4557 -0.4766 5.2448 32 1 -1.2835 0.7319 4.2340 33 1 2.8466 1.2420 5.2277 34 1 1.9565 -0.1786 5.8252 35 1 2.3555 -0.0409 4.0958 36 1 0.1585 -0.4395 8.0600 37 1 3.9318 2.1835 0.5792 38 1 3.9034 0.4008 0.4024 39 1 3.8373 0.5309 -2.0046 40 1 4.9288 1.8939 -1.5969 41 1 2.7450 2.3815 -3.0991 42 1 3.1541 3.5134 -1.7719 43 1 0.9731 1.4349 -1.9120 44 1 0.9968 2.9930 -1.0385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315934824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:16 Heat of formation + Delta-G solvation = -66.280907 kcal Electronic energy + Delta-G solvation = -22080.797252 eV Core-core repulsion = 19031.626600 eV Total energy + Delta-G solvation = -3049.170652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71820 -38.90796 -37.89234 -35.70183 -34.61369 -32.66096 -29.98047 -29.19257 -27.62506 -27.51873 -26.74631 -25.44814 -22.97215 -21.69452 -20.71550 -20.24766 -18.70294 -17.82945 -17.07665 -16.71057 -16.65824 -16.26863 -16.16263 -15.39856 -14.91230 -14.79001 -14.55680 -14.21626 -14.03939 -13.97736 -13.26811 -13.21952 -13.11045 -12.73081 -12.67671 -12.59283 -12.31419 -12.26506 -12.16599 -12.02413 -11.88814 -11.87672 -11.54353 -11.45990 -11.32348 -11.14560 -10.76303 -10.42852 -10.02639 -9.51561 -8.05338 -6.21395 1.41965 1.43371 1.49835 1.55047 2.17872 2.45445 3.11231 3.18189 3.50576 3.58533 3.83414 4.23184 4.34912 4.38485 4.42578 4.50706 4.52546 4.56554 4.64631 4.70618 4.80547 4.89315 4.92506 4.98114 5.03303 5.04855 5.08481 5.09249 5.12899 5.21967 5.24081 5.30074 5.49341 5.52039 5.62003 5.63404 5.79165 6.09951 6.16086 6.22838 6.39315 6.57093 6.81561 7.19204 7.46387 8.93344 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035250 B = 0.004567 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.128969 B = 6130.026672 C = 6278.409845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.659 5.659 3 C 0.102 3.898 4 C 0.479 3.521 5 O -0.588 6.588 6 N -0.709 5.709 7 C 0.148 3.852 8 C 0.052 3.948 9 C -0.117 4.117 10 C -0.119 4.119 11 C -0.532 4.532 12 H 0.042 0.958 13 C 0.031 3.969 14 N -0.897 5.897 15 Si 0.945 3.055 16 H -0.278 1.278 17 H -0.281 1.281 18 H -0.277 1.277 19 C -0.108 4.108 20 C -0.106 4.106 21 C -0.118 4.118 22 C -0.107 4.107 23 H 0.011 0.989 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.348 0.652 27 H 0.403 0.597 28 H 0.033 0.967 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.015 0.985 33 H 0.018 0.982 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.261 0.739 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.149 -3.349 -16.087 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.291 5.291 3 C 0.007 3.993 4 C 0.265 3.735 5 O -0.467 6.467 6 N -0.361 5.361 7 C 0.024 3.976 8 C 0.052 3.948 9 C -0.175 4.175 10 C -0.177 4.177 11 C -0.570 4.570 12 H 0.060 0.940 13 C -0.169 4.169 14 N -0.535 5.535 15 Si 0.771 3.229 16 H -0.204 1.204 17 H -0.206 1.206 18 H -0.203 1.203 19 C -0.146 4.146 20 C -0.144 4.144 21 C -0.156 4.156 22 C -0.145 4.145 23 H 0.030 0.970 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.167 0.833 27 H 0.241 0.759 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.019 -2.742 -16.648 17.603 hybrid contribution -0.769 0.708 2.408 2.625 sum 4.250 -2.034 -14.240 14.999 Atomic orbital electron populations 1.22440 0.87226 1.03677 1.00379 1.60740 1.08340 1.10498 1.49526 1.22036 0.97384 0.88304 0.91540 1.22439 0.76826 0.88212 0.86038 1.90619 1.53094 1.17834 1.85163 1.46215 1.69041 1.11598 1.09244 1.21264 0.97252 0.94678 0.84394 1.18350 0.93607 0.92246 0.90639 1.21640 0.97152 0.99287 0.99393 1.21660 0.96182 0.99532 1.00325 1.21208 1.47646 0.93335 0.94841 0.94000 1.25425 0.95043 0.95700 1.00759 1.69886 1.49399 1.07430 1.26823 0.85828 0.78595 0.78669 0.79783 1.20397 1.20616 1.20285 1.22405 0.89926 1.02695 0.99593 1.22407 0.98783 1.00125 0.93047 1.22325 0.93841 0.99013 1.00437 1.22192 0.99464 0.99232 0.93654 0.97029 0.91020 0.88769 0.83264 0.75936 0.94862 0.94548 0.94728 0.91681 0.96592 0.96300 0.91690 0.94547 0.92921 0.92531 0.88939 0.89532 0.90135 0.89493 0.92577 0.89269 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.91 127.69 1.26 1.53 16 2 N -0.66 -13.92 6.18 -493.12 -3.05 -16.97 16 3 C 0.10 2.58 0.81 3.50 0.00 2.58 16 4 C 0.48 16.59 5.47 87.66 0.48 17.07 16 5 O -0.59 -25.31 15.57 -3.03 -0.05 -25.36 16 6 N -0.71 -24.76 4.01 -463.05 -1.86 -26.61 16 7 C 0.15 6.42 4.51 86.38 0.39 6.81 16 8 C 0.05 2.41 0.50 -52.93 -0.03 2.39 16 9 C -0.12 -5.17 8.08 71.98 0.58 -4.59 16 10 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 11 C -0.53 -28.23 8.01 25.60 0.21 -28.02 16 12 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 13 C 0.03 1.62 5.15 84.65 0.44 2.06 16 14 N -0.90 -47.37 9.35 21.45 0.20 -47.17 16 15 Si 0.94 42.53 29.54 68.60 2.03 44.55 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C -0.11 -2.34 6.04 31.67 0.19 -2.15 16 20 C -0.11 -1.80 6.91 31.88 0.22 -1.58 16 21 C -0.12 -2.28 6.83 31.67 0.22 -2.06 16 22 C -0.11 -2.58 5.43 31.32 0.17 -2.41 16 23 H 0.01 0.30 6.51 -2.39 -0.02 0.29 16 24 H 0.07 1.53 6.40 -2.39 -0.02 1.52 16 25 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.35 6.78 7.41 -89.69 -0.66 6.11 16 27 H 0.40 12.31 4.45 -92.71 -0.41 11.89 16 28 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 31 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 32 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 35 H 0.04 1.32 6.86 -2.39 -0.02 1.30 16 36 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 37 H 0.06 1.42 7.85 -2.38 -0.02 1.41 16 38 H 0.09 1.71 7.92 -2.39 -0.02 1.69 16 39 H 0.09 1.28 8.14 -2.38 -0.02 1.27 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 1.89 6.61 -2.38 -0.02 1.88 16 44 H 0.05 1.60 6.71 -2.39 -0.02 1.59 16 Total: -1.00 -60.30 330.74 1.90 -58.40 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.09 Total: 26.17 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 4.71 Total: -13.03 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -4.70 Total: -90.74 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -60.30 1.90 -58.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315934824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.878 kcal (2) G-P(sol) polarization free energy of solvation -60.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds