Wall clock time and date at job start Mon Mar 30 2020 05:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47124 * 2 1 4 4 C 1.50695 * 109.47231 * 239.99946 * 2 1 3 5 5 H 1.08005 * 119.99701 * 237.00883 * 4 2 1 6 6 C 1.37873 * 120.00341 * 57.00241 * 4 2 1 7 7 N 1.31515 * 119.99680 * 5.55068 * 6 4 2 8 8 Si 1.86798 * 119.99981 * 185.54023 * 6 4 2 9 9 H 1.48503 * 109.46954 * 85.00430 * 8 6 4 10 10 H 1.48505 * 109.47152 * 205.00182 * 8 6 4 11 11 H 1.48494 * 109.47480 * 325.00551 * 8 6 4 12 12 C 1.53005 * 109.46871 * 119.99352 * 2 1 3 13 13 N 1.46494 * 109.47379 * 300.00277 * 12 2 1 14 14 C 1.34770 * 120.00165 * 180.02562 * 13 12 2 15 15 O 1.21287 * 120.00157 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00269 * 180.02562 * 14 13 12 17 17 H 1.08993 * 109.47105 * 59.99814 * 16 14 13 18 18 C 1.53005 * 109.46798 * 299.99269 * 16 14 13 19 19 C 1.52992 * 109.47650 * 300.00298 * 18 16 14 20 20 C 1.52999 * 109.47129 * 300.00039 * 19 18 16 21 21 C 1.53004 * 109.47316 * 59.99822 * 20 19 18 22 22 H 1.08993 * 109.46983 * 60.00146 * 21 20 19 23 23 N 1.46896 * 109.46961 * 180.02562 * 21 20 19 24 24 C 1.53000 * 109.46989 * 300.00025 * 21 20 19 25 25 H 1.09004 * 109.47374 * 293.94064 * 1 2 3 26 26 H 1.09005 * 109.47215 * 53.93599 * 1 2 3 27 27 H 1.09000 * 109.47150 * 173.93306 * 1 2 3 28 28 H 1.09001 * 109.47140 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46596 * 300.00166 * 3 2 1 30 30 H 1.09000 * 109.47166 * 59.99300 * 3 2 1 31 31 H 0.97000 * 119.99803 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46935 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.46835 * 60.00316 * 12 2 1 34 34 H 0.97007 * 120.00004 * 359.97438 * 13 12 2 35 35 H 1.09000 * 109.46886 * 179.97438 * 18 16 14 36 36 H 1.09000 * 109.46528 * 60.00765 * 18 16 14 37 37 H 1.09002 * 109.47311 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.47476 * 59.99749 * 19 18 16 39 39 H 1.09007 * 109.47052 * 299.99966 * 20 19 18 40 40 H 1.09001 * 109.47176 * 179.97438 * 20 19 18 41 41 H 1.00901 * 111.00357 * 299.99323 * 23 21 20 42 42 H 1.00897 * 111.00423 * 63.95366 * 23 21 20 43 43 H 1.09002 * 109.47133 * 179.97438 * 24 21 20 44 44 H 1.09000 * 109.47670 * 300.00031 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6925 -1.5595 -1.1320 6 6 1.6491 -0.2766 -2.4817 7 7 0.9351 0.8208 -2.6071 8 14 2.1443 -1.2472 -3.9990 9 1 1.1620 -2.3364 -4.2321 10 1 2.1709 -0.3441 -5.1775 11 1 3.4933 -1.8329 -3.7935 12 6 2.0400 -0.7211 1.2494 13 7 1.5516 -0.0305 2.4454 14 6 1.8775 -0.4905 3.6695 15 8 2.5748 -1.4766 3.7810 16 6 1.3747 0.2196 4.9000 17 1 0.2847 0.2188 4.9000 18 6 1.8837 1.6625 4.8999 19 6 3.4137 1.6636 4.8998 20 6 3.9242 0.9428 6.1491 21 6 3.4153 -0.5001 6.1492 22 1 3.7790 -1.0137 5.2594 23 7 3.9051 -1.1918 7.3490 24 6 1.8853 -0.5012 6.1493 25 1 -0.3634 0.4170 0.9393 26 1 -0.3634 0.6050 -0.8308 27 1 -0.3633 -1.0219 -0.1086 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.6658 1.1262 -3.4875 32 1 3.1300 -0.7207 1.2496 33 1 1.6766 -1.7488 1.2494 34 1 0.9942 0.7584 2.3564 35 1 1.5197 2.1762 5.7896 36 1 1.5199 2.1759 4.0099 37 1 3.7763 2.6916 4.8992 38 1 3.7774 1.1500 4.0099 39 1 3.5605 1.4565 7.0391 40 1 5.0143 0.9433 6.1488 41 1 4.9137 -1.2047 7.3727 42 1 3.5290 -0.7734 8.1866 43 1 1.5227 -1.5291 6.1490 44 1 1.5216 0.0125 7.0392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316015230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:12 Heat of formation + Delta-G solvation = -66.343849 kcal Electronic energy + Delta-G solvation = -21874.250064 eV Core-core repulsion = 18825.076683 eV Total energy + Delta-G solvation = -3049.173381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.30603 -37.64487 -36.15822 -33.87776 -33.02149 -31.10213 -30.64558 -27.91369 -25.74696 -25.72721 -25.06306 -22.98344 -22.00709 -20.82734 -19.27679 -18.71064 -16.55898 -16.05507 -15.85493 -15.65701 -15.03588 -14.67000 -14.48556 -14.09031 -13.84229 -13.38157 -13.09645 -12.89741 -12.60630 -12.29137 -12.18648 -12.07789 -11.92824 -11.42911 -11.19041 -11.05008 -10.89125 -10.77073 -10.68198 -10.61662 -10.37971 -10.22935 -10.19328 -9.62618 -9.41510 -9.07333 -8.78513 -8.62477 -8.42141 -8.25985 -6.02760 -4.11434 3.10437 3.28930 3.35371 3.38874 3.78572 4.40205 4.41288 4.70808 4.73020 5.00078 5.08118 5.13161 5.24486 5.32504 5.42222 5.50330 5.55149 5.62094 5.82741 5.91715 5.98609 6.11545 6.19447 6.25062 6.30589 6.34453 6.50967 6.53318 6.80721 6.81455 6.93432 7.01613 7.07759 7.18069 7.35544 7.45169 7.55340 7.69910 7.99121 8.08241 8.17293 8.38600 8.77002 8.89333 9.54048 10.99245 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035180 B = 0.004326 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.711422 B = 6471.032438 C = 6665.677729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.132 3.868 13 N -0.716 5.716 14 C 0.509 3.491 15 O -0.546 6.546 16 C -0.110 4.110 17 H 0.095 0.905 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.151 4.151 21 C 0.076 3.924 22 H 0.114 0.886 23 N -0.843 5.843 24 C -0.086 4.086 25 H 0.006 0.994 26 H 0.081 0.919 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.085 0.915 30 H 0.005 0.995 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.396 0.604 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.338 0.662 42 H 0.330 0.670 43 H 0.075 0.925 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 4.032 15.917 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.010 3.990 13 N -0.367 5.367 14 C 0.295 3.705 15 O -0.425 6.425 16 C -0.132 4.132 17 H 0.113 0.887 18 C -0.148 4.148 19 C -0.158 4.158 20 C -0.190 4.190 21 C -0.035 4.035 22 H 0.132 0.868 23 N -0.370 5.370 24 C -0.125 4.125 25 H 0.025 0.975 26 H 0.099 0.901 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.232 0.768 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.093 0.907 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.003 2.773 15.523 15.801 hybrid contribution 0.362 0.909 -0.701 1.203 sum 1.365 3.681 14.822 15.333 Atomic orbital electron populations 1.21800 0.97762 1.00123 0.98917 1.18355 0.92741 0.92742 0.90682 1.21836 0.98517 0.98347 0.99951 1.20970 1.29315 1.14310 0.89968 0.92488 1.24870 0.94986 0.94765 0.98784 1.69826 1.37896 1.21402 1.23255 0.86608 0.79052 0.79934 0.82397 1.20624 1.21345 1.19977 1.21673 0.97992 0.95792 0.83568 1.46343 1.52593 1.31673 1.06067 1.20459 0.80689 0.84607 0.84775 1.90607 1.38460 1.26762 1.86641 1.21383 1.01556 0.96081 0.94211 0.88699 1.21526 0.96153 0.94465 1.02611 1.21488 0.95325 1.00402 0.98543 1.22420 1.00278 0.98143 0.98204 1.21878 0.95071 0.91403 0.95162 0.86829 1.58923 1.13443 1.60181 1.04438 1.21253 0.95156 1.00925 0.95123 0.97492 0.90058 0.95218 0.95532 0.89648 0.97615 0.93036 0.92901 0.92803 0.76839 0.91173 0.91181 0.91877 0.91405 0.92602 0.92432 0.85019 0.85819 0.90651 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.03 37.16 0.30 -2.57 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.86 8.11 37.16 0.30 -2.56 16 4 C -0.51 -13.26 8.01 -34.44 -0.28 -13.53 16 5 H 0.06 1.51 7.75 -52.48 -0.41 1.11 16 6 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 7 N -0.89 -23.50 9.45 55.43 0.52 -22.98 16 8 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.79 4.50 -4.04 -0.02 2.77 16 13 N -0.72 -12.40 4.80 -60.29 -0.29 -12.69 16 14 C 0.51 8.47 5.64 -10.99 -0.06 8.41 16 15 O -0.55 -10.96 13.66 5.55 0.08 -10.89 16 16 C -0.11 -1.37 3.01 -91.76 -0.28 -1.64 16 17 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 18 C -0.11 -1.17 5.35 -26.73 -0.14 -1.32 16 19 C -0.12 -1.38 5.70 -26.74 -0.15 -1.54 16 20 C -0.15 -1.63 5.49 -26.73 -0.15 -1.78 16 21 C 0.08 0.96 2.95 -67.71 -0.20 0.76 16 22 H 0.11 1.88 5.51 -51.93 -0.29 1.59 16 23 N -0.84 -9.33 9.25 -4.67 -0.04 -9.37 16 24 C -0.09 -1.05 4.63 -26.73 -0.12 -1.18 16 25 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 26 H 0.08 2.00 6.25 -51.93 -0.32 1.67 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 2.11 6.10 -51.93 -0.32 1.79 16 30 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 31 H 0.26 6.67 8.31 -40.82 -0.34 6.34 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.40 6.24 5.57 -40.82 -0.23 6.02 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.97 7.22 -51.93 -0.37 0.59 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.34 3.30 9.04 -39.29 -0.36 2.95 16 42 H 0.33 2.99 8.98 -39.29 -0.35 2.64 16 43 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -28.01 330.48 -8.27 -36.27 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.53 Total: 10.26 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -0.97 Total: -11.30 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.19 Total: -45.04 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.01 -8.27 -36.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316015230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.071 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds