Wall clock time and date at job start Mon Mar 30 2020 05:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47124 * 2 1 4 4 C 1.50695 * 109.47231 * 239.99946 * 2 1 3 5 5 H 1.08005 * 119.99701 * 237.00883 * 4 2 1 6 6 C 1.37873 * 120.00341 * 57.00241 * 4 2 1 7 7 N 1.31515 * 119.99680 * 5.55068 * 6 4 2 8 8 Si 1.86798 * 119.99981 * 185.54023 * 6 4 2 9 9 H 1.48503 * 109.46954 * 85.00430 * 8 6 4 10 10 H 1.48505 * 109.47152 * 205.00182 * 8 6 4 11 11 H 1.48494 * 109.47480 * 325.00551 * 8 6 4 12 12 C 1.53005 * 109.46871 * 119.99352 * 2 1 3 13 13 N 1.46494 * 109.47379 * 300.00277 * 12 2 1 14 14 C 1.34770 * 120.00165 * 180.02562 * 13 12 2 15 15 O 1.21287 * 120.00157 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00269 * 180.02562 * 14 13 12 17 17 H 1.08993 * 109.47105 * 59.99814 * 16 14 13 18 18 C 1.53005 * 109.46798 * 299.99269 * 16 14 13 19 19 C 1.52992 * 109.47650 * 300.00298 * 18 16 14 20 20 C 1.52999 * 109.47129 * 300.00039 * 19 18 16 21 21 C 1.53004 * 109.47316 * 59.99822 * 20 19 18 22 22 H 1.08993 * 109.46983 * 60.00146 * 21 20 19 23 23 N 1.46896 * 109.46961 * 180.02562 * 21 20 19 24 24 C 1.53000 * 109.46989 * 300.00025 * 21 20 19 25 25 H 1.09004 * 109.47374 * 293.94064 * 1 2 3 26 26 H 1.09005 * 109.47215 * 53.93599 * 1 2 3 27 27 H 1.09000 * 109.47150 * 173.93306 * 1 2 3 28 28 H 1.09001 * 109.47140 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46596 * 300.00166 * 3 2 1 30 30 H 1.09000 * 109.47166 * 59.99300 * 3 2 1 31 31 H 0.97000 * 119.99803 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46935 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.46835 * 60.00316 * 12 2 1 34 34 H 0.97007 * 120.00004 * 359.97438 * 13 12 2 35 35 H 1.09000 * 109.46886 * 179.97438 * 18 16 14 36 36 H 1.09000 * 109.46528 * 60.00765 * 18 16 14 37 37 H 1.09002 * 109.47311 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.47476 * 59.99749 * 19 18 16 39 39 H 1.09007 * 109.47052 * 299.99966 * 20 19 18 40 40 H 1.09001 * 109.47176 * 179.97438 * 20 19 18 41 41 H 1.00901 * 111.00357 * 299.99323 * 23 21 20 42 42 H 1.00897 * 111.00423 * 63.95366 * 23 21 20 43 43 H 1.09002 * 109.47133 * 179.97438 * 24 21 20 44 44 H 1.09000 * 109.47670 * 300.00031 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6925 -1.5595 -1.1320 6 6 1.6491 -0.2766 -2.4817 7 7 0.9351 0.8208 -2.6071 8 14 2.1443 -1.2472 -3.9990 9 1 1.1620 -2.3364 -4.2321 10 1 2.1709 -0.3441 -5.1775 11 1 3.4933 -1.8329 -3.7935 12 6 2.0400 -0.7211 1.2494 13 7 1.5516 -0.0305 2.4454 14 6 1.8775 -0.4905 3.6695 15 8 2.5748 -1.4766 3.7810 16 6 1.3747 0.2196 4.9000 17 1 0.2847 0.2188 4.9000 18 6 1.8837 1.6625 4.8999 19 6 3.4137 1.6636 4.8998 20 6 3.9242 0.9428 6.1491 21 6 3.4153 -0.5001 6.1492 22 1 3.7790 -1.0137 5.2594 23 7 3.9051 -1.1918 7.3490 24 6 1.8853 -0.5012 6.1493 25 1 -0.3634 0.4170 0.9393 26 1 -0.3634 0.6050 -0.8308 27 1 -0.3633 -1.0219 -0.1086 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.6658 1.1262 -3.4875 32 1 3.1300 -0.7207 1.2496 33 1 1.6766 -1.7488 1.2494 34 1 0.9942 0.7584 2.3564 35 1 1.5197 2.1762 5.7896 36 1 1.5199 2.1759 4.0099 37 1 3.7763 2.6916 4.8992 38 1 3.7774 1.1500 4.0099 39 1 3.5605 1.4565 7.0391 40 1 5.0143 0.9433 6.1488 41 1 4.9137 -1.2047 7.3727 42 1 3.5290 -0.7734 8.1866 43 1 1.5227 -1.5291 6.1490 44 1 1.5216 0.0125 7.0392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316015230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:12 Heat of formation + Delta-G solvation = -84.948562 kcal Electronic energy + Delta-G solvation = -21875.056825 eV Core-core repulsion = 18825.076683 eV Total energy + Delta-G solvation = -3049.980142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51546 -38.95861 -37.76185 -35.16730 -34.40951 -32.65544 -31.85172 -28.84835 -27.56658 -27.48671 -26.85712 -24.16722 -22.94046 -21.93207 -20.63407 -20.42672 -18.04943 -17.48244 -17.09146 -16.86800 -16.53977 -16.25462 -15.77220 -15.20947 -15.08003 -14.72577 -14.49842 -14.44911 -13.98460 -13.71941 -13.25834 -13.17290 -13.12161 -13.02935 -12.95077 -12.68897 -12.60305 -12.24964 -12.14894 -11.95109 -11.77075 -11.53074 -11.47315 -11.24809 -11.10699 -10.73060 -10.43450 -10.36989 -9.85543 -9.47147 -8.03518 -6.17774 1.41734 1.44423 1.51881 1.79420 2.36845 2.52745 3.20389 3.51542 3.75664 3.81163 4.00590 4.17258 4.22803 4.34115 4.45874 4.50905 4.52121 4.62874 4.66976 4.73178 4.74255 4.96406 5.00716 5.03621 5.05659 5.11716 5.13418 5.18977 5.26614 5.28017 5.35252 5.40402 5.55429 5.66686 5.67515 5.68978 6.14064 6.21561 6.33022 6.43154 6.70267 6.76056 6.85965 7.43636 7.49477 8.95859 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035180 B = 0.004326 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.711422 B = 6471.032438 C = 6665.677729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.051 3.949 3 C -0.117 4.117 4 C -0.531 4.531 5 H 0.041 0.959 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.942 3.058 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.711 5.711 14 C 0.505 3.495 15 O -0.584 6.584 16 C -0.102 4.102 17 H 0.121 0.879 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.143 4.143 21 C 0.077 3.923 22 H 0.068 0.932 23 N -0.851 5.851 24 C -0.084 4.084 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.260 0.740 32 H 0.032 0.968 33 H 0.033 0.967 34 H 0.407 0.593 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.343 0.657 42 H 0.345 0.655 43 H 0.051 0.949 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 5.608 17.854 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.050 3.950 3 C -0.175 4.175 4 C -0.570 4.570 5 H 0.059 0.941 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.362 5.362 14 C 0.294 3.706 15 O -0.465 6.465 16 C -0.124 4.124 17 H 0.139 0.861 18 C -0.143 4.143 19 C -0.160 4.160 20 C -0.182 4.182 21 C -0.035 4.035 22 H 0.086 0.914 23 N -0.380 5.380 24 C -0.122 4.122 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.244 0.756 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.070 0.930 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.084 4.370 17.479 18.017 hybrid contribution 0.693 0.375 -1.267 1.492 sum 0.776 4.745 16.211 16.909 Atomic orbital electron populations 1.21634 0.97001 0.99090 0.99759 1.18359 0.93267 0.93069 0.90300 1.21652 0.97721 0.97747 1.00344 1.21254 1.29550 1.14390 0.91777 0.94063 1.25420 0.95171 0.95545 1.00796 1.69921 1.38126 1.21877 1.23641 0.85818 0.78480 0.78887 0.79880 1.20439 1.20744 1.20266 1.21170 0.96594 0.94947 0.84662 1.46165 1.52879 1.31864 1.05334 1.21356 0.79588 0.84115 0.85579 1.90610 1.40004 1.28705 1.87192 1.21450 1.02894 0.96632 0.91398 0.86136 1.21572 0.95124 0.93121 1.04483 1.21512 0.96360 1.00854 0.97305 1.22337 1.00214 0.96798 0.98855 1.21667 0.95563 0.92243 0.94010 0.91387 1.58839 1.14072 1.60458 1.04600 1.21260 0.94663 1.00027 0.96298 0.94194 0.92141 0.96504 0.96595 0.91952 0.94352 0.93023 0.94967 0.94811 0.75580 0.87803 0.90757 0.90293 0.95068 0.89991 0.92656 0.84402 0.84166 0.93021 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.03 71.98 0.58 -4.59 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.15 8.11 71.98 0.58 -4.57 16 4 C -0.53 -28.40 8.01 25.60 0.20 -28.20 16 5 H 0.04 2.27 7.75 -2.91 -0.02 2.25 16 6 C 0.03 1.63 5.13 84.65 0.43 2.06 16 7 N -0.90 -47.81 9.45 21.45 0.20 -47.61 16 8 Si 0.94 42.90 29.54 68.60 2.03 44.93 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 C 0.15 6.48 4.50 86.38 0.39 6.87 16 13 N -0.71 -24.13 4.80 -463.06 -2.22 -26.35 16 14 C 0.51 16.59 5.64 87.66 0.49 17.08 16 15 O -0.58 -24.20 13.66 -3.05 -0.04 -24.24 16 16 C -0.10 -2.25 3.01 -11.54 -0.03 -2.29 16 17 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 18 C -0.11 -1.85 5.35 30.59 0.16 -1.69 16 19 C -0.12 -2.56 5.70 30.59 0.17 -2.38 16 20 C -0.14 -2.74 5.49 30.60 0.17 -2.57 16 21 C 0.08 1.85 2.95 44.92 0.13 1.99 16 22 H 0.07 2.32 5.51 -2.39 -0.01 2.31 16 23 N -0.85 -17.69 9.25 -168.69 -1.56 -19.25 16 24 C -0.08 -1.86 4.63 30.60 0.14 -1.72 16 25 H 0.04 1.45 6.71 -2.38 -0.02 1.44 16 26 H 0.06 2.94 6.25 -2.38 -0.01 2.93 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 3.07 6.10 -2.39 -0.01 3.05 16 30 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 31 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 32 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.41 11.92 5.57 -92.70 -0.52 11.40 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.28 7.56 -2.39 -0.02 1.26 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.03 0.87 7.22 -2.39 -0.02 0.86 16 39 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.34 6.41 9.04 -89.69 -0.81 5.60 16 42 H 0.34 5.36 8.98 -89.70 -0.81 4.56 16 43 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -62.73 330.48 0.68 -62.05 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -1.13 Total: 28.17 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 3.40 Total: -17.69 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -3.58 Total: -93.21 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.04 Total: -24.24 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -62.73 0.68 -62.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316015230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.903 kcal (2) G-P(sol) polarization free energy of solvation -62.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds