Wall clock time and date at job start Mon Mar 30 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46915 * 2 1 4 4 C 1.50708 * 109.47078 * 240.00105 * 2 1 3 5 5 H 1.07992 * 119.99833 * 239.99879 * 4 2 1 6 6 C 1.37876 * 119.99659 * 59.99793 * 4 2 1 7 7 N 1.31515 * 120.00639 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99373 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46759 * 90.00457 * 8 6 4 10 10 H 1.48502 * 109.46770 * 210.00110 * 8 6 4 11 11 H 1.48498 * 109.47365 * 330.00022 * 8 6 4 12 12 C 1.52991 * 109.46918 * 120.00037 * 2 1 3 13 13 N 1.46498 * 109.47370 * 299.99857 * 12 2 1 14 14 C 1.34775 * 120.00007 * 180.02562 * 13 12 2 15 15 O 1.21275 * 120.00178 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99939 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.46987 * 185.71240 * 16 14 13 18 18 C 1.53001 * 112.85073 * 65.04541 * 17 16 14 19 19 N 1.46897 * 109.46893 * 54.20178 * 18 17 16 20 20 C 1.53787 * 113.61357 * 196.23999 * 17 16 14 21 21 C 1.53948 * 87.01874 * 89.23168 * 20 17 16 22 22 C 1.53777 * 87.11534 * 25.36411 * 21 20 17 23 23 H 1.08992 * 109.47137 * 300.00120 * 1 2 3 24 24 H 1.09003 * 109.46759 * 59.99799 * 1 2 3 25 25 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46901 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47188 * 299.99386 * 3 2 1 28 28 H 1.08992 * 109.47316 * 59.99989 * 3 2 1 29 29 H 0.96990 * 119.99893 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.46886 * 179.97438 * 12 2 1 31 31 H 1.09003 * 109.47551 * 60.00546 * 12 2 1 32 32 H 0.96999 * 119.99581 * 0.02562 * 13 12 2 33 33 H 1.09005 * 109.47012 * 65.71413 * 16 14 13 34 34 H 1.08990 * 109.46954 * 305.71614 * 16 14 13 35 35 H 1.08996 * 109.46892 * 294.20480 * 18 17 16 36 36 H 1.08999 * 109.47174 * 174.20474 * 18 17 16 37 37 H 1.00905 * 111.00316 * 54.49747 * 19 18 17 38 38 H 1.00908 * 110.99922 * 178.44822 * 19 18 17 39 39 H 1.09001 * 113.61049 * 203.75506 * 20 17 16 40 40 H 1.09000 * 113.61245 * 334.64812 * 20 17 16 41 41 H 1.08999 * 113.53919 * 270.80934 * 21 20 17 42 42 H 1.09004 * 113.74481 * 139.94744 * 21 20 17 43 43 H 1.09001 * 113.61994 * 220.09165 * 22 21 20 44 44 H 1.09000 * 113.69362 * 89.19648 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1615 -4.4124 10 1 2.4873 -0.1402 -5.1121 11 1 3.6309 -1.7565 -3.7120 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4909 3.6694 15 8 2.5749 -1.4769 3.7807 16 6 1.3749 0.2192 4.9000 17 6 1.9993 -0.4139 6.1450 18 6 3.5160 -0.2241 6.2109 19 7 3.8363 1.2047 6.0931 20 6 1.2752 -0.0475 7.4514 21 6 0.3845 -1.2795 7.2090 22 6 1.5485 -1.8634 6.3911 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.7095 1.1618 -3.4844 30 1 3.1300 -0.7216 1.2489 31 1 1.6767 -1.7489 1.2492 32 1 0.9937 0.7578 2.3563 33 1 0.2897 0.1307 4.9527 34 1 1.6514 1.2723 4.8502 35 1 3.9864 -0.7705 5.3934 36 1 3.8885 -0.6027 7.1628 37 1 3.3399 1.7449 6.7859 38 1 4.8313 1.3589 6.1592 39 1 1.9045 -0.1311 8.3375 40 1 0.7365 0.8987 7.4014 41 1 -0.5029 -1.0647 6.6137 42 1 0.1605 -1.8441 8.1141 43 1 1.2300 -2.3811 5.4863 44 1 2.2532 -2.4449 6.9855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316023318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:56 Heat of formation + Delta-G solvation = -34.693982 kcal Electronic energy + Delta-G solvation = -21515.742523 eV Core-core repulsion = 18467.941583 eV Total energy + Delta-G solvation = -3047.800940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28507 -38.29928 -36.16160 -33.85996 -33.14641 -30.98149 -29.55971 -26.34597 -25.67285 -25.65834 -25.37684 -24.42308 -21.97855 -20.17129 -18.78805 -18.13068 -16.64142 -16.29441 -15.68201 -15.43461 -15.15549 -14.72926 -14.44071 -14.22573 -14.14785 -13.29569 -12.98726 -12.84809 -12.61664 -12.28809 -12.07824 -11.96368 -11.79310 -11.33622 -11.28758 -11.14318 -10.82133 -10.66560 -10.52153 -10.32421 -10.25161 -10.15021 -10.03627 -9.57315 -9.36916 -9.02980 -8.72877 -8.66822 -8.38220 -8.18074 -5.98252 -4.08097 3.27345 3.30579 3.37424 3.41532 3.87147 4.41415 4.45398 4.57075 4.62494 4.82705 4.98473 5.09235 5.28351 5.41954 5.47976 5.55129 5.67315 5.73688 5.78119 5.85962 5.87704 6.12704 6.28745 6.30950 6.38535 6.41452 6.43987 6.57898 6.86520 6.89061 7.00995 7.08136 7.12360 7.16982 7.41244 7.42792 7.61016 7.73473 8.06137 8.15930 8.27623 8.43841 8.88082 8.94571 9.57473 11.03087 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035145 B = 0.003965 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.510686 B = 7060.542717 C = 7131.203395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.504 4.504 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.134 3.866 13 N -0.720 5.720 14 C 0.512 3.488 15 O -0.552 6.552 16 C -0.112 4.112 17 C -0.056 4.056 18 C 0.073 3.927 19 N -0.847 5.847 20 C -0.136 4.136 21 C -0.145 4.145 22 C -0.122 4.122 23 H 0.006 0.994 24 H 0.084 0.916 25 H 0.025 0.975 26 H 0.026 0.974 27 H 0.084 0.916 28 H 0.007 0.993 29 H 0.259 0.741 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.396 0.604 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.020 0.980 37 H 0.334 0.666 38 H 0.339 0.661 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 1.513 18.029 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.011 3.989 13 N -0.370 5.370 14 C 0.298 3.702 15 O -0.432 6.432 16 C -0.152 4.152 17 C -0.057 4.057 18 C -0.057 4.057 19 N -0.376 5.376 20 C -0.173 4.173 21 C -0.182 4.182 22 C -0.160 4.160 23 H 0.025 0.975 24 H 0.103 0.897 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.103 0.897 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.231 0.769 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.038 0.962 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.379 0.857 17.197 17.222 hybrid contribution 0.438 -0.145 0.042 0.464 sum 0.059 0.712 17.239 17.254 Atomic orbital electron populations 1.21819 0.97841 0.99062 1.00031 1.18354 0.92728 0.92802 0.90674 1.21807 0.98544 0.98327 1.00026 1.21000 1.31337 1.12012 0.89963 0.92529 1.24877 0.94916 0.94917 0.98805 1.69806 1.36824 1.22730 1.23134 0.86589 0.79322 0.79386 0.82672 1.20752 1.21286 1.19927 1.21630 0.97979 0.95582 0.83660 1.46310 1.52775 1.31783 1.06130 1.20437 0.80492 0.84594 0.84690 1.90606 1.38674 1.26929 1.86954 1.21339 1.00468 1.01538 0.91847 1.21451 0.94171 0.96654 0.93376 1.21844 0.95027 0.88813 1.00017 1.58678 1.12806 1.08396 1.57681 1.23066 0.98724 0.98413 0.97128 1.22890 0.97568 0.97545 1.00221 1.22891 0.97042 0.95731 1.00344 0.97483 0.89685 0.95559 0.95515 0.89727 0.97415 0.93067 0.92987 0.93066 0.76932 0.89801 0.88176 0.89250 0.96182 0.85445 0.84920 0.90502 0.91441 0.90286 0.91822 0.90464 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 4 C -0.50 -13.42 8.01 -34.44 -0.28 -13.70 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.86 9.35 55.43 0.52 -23.34 16 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.13 2.92 4.50 -4.05 -0.02 2.90 16 13 N -0.72 -13.09 4.96 -60.30 -0.30 -13.39 16 14 C 0.51 8.83 7.32 -10.98 -0.08 8.75 16 15 O -0.55 -11.12 13.09 5.56 0.07 -11.05 16 16 C -0.11 -1.44 4.92 -27.88 -0.14 -1.58 16 17 C -0.06 -0.65 0.43 -153.69 -0.07 -0.72 16 18 C 0.07 0.89 5.86 -3.83 -0.02 0.87 16 19 N -0.85 -9.04 8.82 -10.37 -0.09 -9.13 16 20 C -0.14 -1.25 7.00 -25.83 -0.18 -1.43 16 21 C -0.14 -1.41 7.74 -25.83 -0.20 -1.61 16 22 C -0.12 -1.48 6.56 -25.92 -0.17 -1.65 16 23 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 24 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 28 H 0.01 0.14 6.86 -51.93 -0.36 -0.21 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.40 6.60 6.16 -40.82 -0.25 6.35 16 33 H 0.08 0.96 7.32 -51.93 -0.38 0.58 16 34 H 0.10 1.24 7.55 -51.93 -0.39 0.84 16 35 H 0.09 1.39 6.56 -51.93 -0.34 1.05 16 36 H 0.02 0.22 8.06 -51.93 -0.42 -0.20 16 37 H 0.33 2.93 8.75 -39.29 -0.34 2.59 16 38 H 0.34 3.19 9.08 -39.29 -0.36 2.83 16 39 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 40 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 41 H 0.08 0.76 7.61 -51.93 -0.40 0.36 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 1.13 6.94 -51.93 -0.36 0.77 16 44 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -28.34 336.12 -7.97 -36.31 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -7.50 Total: 10.23 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -0.72 Total: -10.62 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.13 Total: -45.86 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.34 -7.97 -36.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316023318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.619 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds