Wall clock time and date at job start Mon Mar 30 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46915 * 2 1 4 4 C 1.50708 * 109.47078 * 240.00105 * 2 1 3 5 5 H 1.07992 * 119.99833 * 239.99879 * 4 2 1 6 6 C 1.37876 * 119.99659 * 59.99793 * 4 2 1 7 7 N 1.31515 * 120.00639 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99373 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46759 * 90.00457 * 8 6 4 10 10 H 1.48502 * 109.46770 * 210.00110 * 8 6 4 11 11 H 1.48498 * 109.47365 * 330.00022 * 8 6 4 12 12 C 1.52991 * 109.46918 * 120.00037 * 2 1 3 13 13 N 1.46498 * 109.47370 * 299.99857 * 12 2 1 14 14 C 1.34775 * 120.00007 * 180.02562 * 13 12 2 15 15 O 1.21275 * 120.00178 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99939 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.46987 * 185.71240 * 16 14 13 18 18 C 1.53001 * 112.85073 * 65.04541 * 17 16 14 19 19 N 1.46897 * 109.46893 * 54.20178 * 18 17 16 20 20 C 1.53787 * 113.61357 * 196.23999 * 17 16 14 21 21 C 1.53948 * 87.01874 * 89.23168 * 20 17 16 22 22 C 1.53777 * 87.11534 * 25.36411 * 21 20 17 23 23 H 1.08992 * 109.47137 * 300.00120 * 1 2 3 24 24 H 1.09003 * 109.46759 * 59.99799 * 1 2 3 25 25 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46901 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47188 * 299.99386 * 3 2 1 28 28 H 1.08992 * 109.47316 * 59.99989 * 3 2 1 29 29 H 0.96990 * 119.99893 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.46886 * 179.97438 * 12 2 1 31 31 H 1.09003 * 109.47551 * 60.00546 * 12 2 1 32 32 H 0.96999 * 119.99581 * 0.02562 * 13 12 2 33 33 H 1.09005 * 109.47012 * 65.71413 * 16 14 13 34 34 H 1.08990 * 109.46954 * 305.71614 * 16 14 13 35 35 H 1.08996 * 109.46892 * 294.20480 * 18 17 16 36 36 H 1.08999 * 109.47174 * 174.20474 * 18 17 16 37 37 H 1.00905 * 111.00316 * 54.49747 * 19 18 17 38 38 H 1.00908 * 110.99922 * 178.44822 * 19 18 17 39 39 H 1.09001 * 113.61049 * 203.75506 * 20 17 16 40 40 H 1.09000 * 113.61245 * 334.64812 * 20 17 16 41 41 H 1.08999 * 113.53919 * 270.80934 * 21 20 17 42 42 H 1.09004 * 113.74481 * 139.94744 * 21 20 17 43 43 H 1.09001 * 113.61994 * 220.09165 * 22 21 20 44 44 H 1.09000 * 113.69362 * 89.19648 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1615 -4.4124 10 1 2.4873 -0.1402 -5.1121 11 1 3.6309 -1.7565 -3.7120 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4909 3.6694 15 8 2.5749 -1.4769 3.7807 16 6 1.3749 0.2192 4.9000 17 6 1.9993 -0.4139 6.1450 18 6 3.5160 -0.2241 6.2109 19 7 3.8363 1.2047 6.0931 20 6 1.2752 -0.0475 7.4514 21 6 0.3845 -1.2795 7.2090 22 6 1.5485 -1.8634 6.3911 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.7095 1.1618 -3.4844 30 1 3.1300 -0.7216 1.2489 31 1 1.6767 -1.7489 1.2492 32 1 0.9937 0.7578 2.3563 33 1 0.2897 0.1307 4.9527 34 1 1.6514 1.2723 4.8502 35 1 3.9864 -0.7705 5.3934 36 1 3.8885 -0.6027 7.1628 37 1 3.3399 1.7449 6.7859 38 1 4.8313 1.3589 6.1592 39 1 1.9045 -0.1311 8.3375 40 1 0.7365 0.8987 7.4014 41 1 -0.5029 -1.0647 6.6137 42 1 0.1605 -1.8441 8.1141 43 1 1.2300 -2.3811 5.4863 44 1 2.2532 -2.4449 6.9855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316023318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:56 Heat of formation + Delta-G solvation = -53.200496 kcal Electronic energy + Delta-G solvation = -21516.545026 eV Core-core repulsion = 18467.941583 eV Total energy + Delta-G solvation = -3048.603443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39066 -39.61961 -37.90534 -34.90512 -34.71363 -32.79375 -30.73876 -27.56635 -27.55028 -27.21542 -26.51158 -25.99684 -22.88659 -21.58149 -20.57331 -19.20911 -18.16247 -17.53218 -17.20115 -16.69117 -16.40838 -16.34968 -15.83826 -15.35923 -15.18353 -14.78464 -14.55386 -14.45325 -13.99259 -13.63760 -13.27294 -13.14081 -13.07879 -12.91253 -12.78229 -12.61741 -12.58125 -12.23596 -12.20956 -12.12972 -11.47429 -11.38614 -11.26709 -11.11755 -10.92072 -10.71165 -10.40075 -10.38803 -9.81009 -9.51040 -8.01557 -6.17386 1.42231 1.44822 1.53335 1.89675 2.40131 2.56716 3.21656 3.57018 3.64734 3.74243 4.02850 4.09328 4.15306 4.30304 4.50473 4.52968 4.57045 4.70016 4.74060 4.83348 4.88006 4.91024 4.96679 5.03009 5.07787 5.14370 5.14495 5.15290 5.21247 5.35327 5.41302 5.48943 5.59370 5.67499 5.68367 5.69562 6.16270 6.23196 6.30158 6.44763 6.70646 6.82465 6.86832 7.50159 7.50270 8.97295 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035145 B = 0.003965 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.510686 B = 7060.542717 C = 7131.203395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 C -0.118 4.118 4 C -0.529 4.529 5 H 0.041 0.959 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.152 3.848 13 N -0.716 5.716 14 C 0.507 3.493 15 O -0.584 6.584 16 C -0.102 4.102 17 C -0.063 4.063 18 C 0.078 3.922 19 N -0.852 5.852 20 C -0.117 4.117 21 C -0.137 4.137 22 C -0.132 4.132 23 H 0.038 0.962 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.260 0.740 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.406 0.594 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.048 0.952 36 H 0.032 0.968 37 H 0.348 0.652 38 H 0.345 0.655 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 2.702 19.892 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.176 4.176 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.028 3.972 13 N -0.368 5.368 14 C 0.295 3.705 15 O -0.465 6.465 16 C -0.141 4.141 17 C -0.064 4.064 18 C -0.052 4.052 19 N -0.383 5.383 20 C -0.155 4.155 21 C -0.174 4.174 22 C -0.170 4.170 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.243 0.757 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.259 2.070 19.080 19.233 hybrid contribution 0.749 -0.553 -0.525 1.069 sum -0.510 1.517 18.555 18.624 Atomic orbital electron populations 1.21651 0.97057 0.98548 1.00402 1.18360 0.93287 0.93021 0.90366 1.21640 0.97717 0.97871 1.00345 1.21276 1.31702 1.12104 0.91722 0.94018 1.25446 0.95152 0.95586 1.00917 1.69905 1.37034 1.23207 1.23585 0.85771 0.78626 0.78532 0.79945 1.20435 1.20688 1.20208 1.21140 0.96517 0.94832 0.84704 1.46179 1.53133 1.32008 1.05488 1.21300 0.79567 0.84205 0.85397 1.90605 1.39969 1.28513 1.87387 1.21362 1.01634 1.01463 0.89681 1.21524 0.93968 0.96474 0.94419 1.21670 0.95254 0.89372 0.98943 1.58610 1.13627 1.07601 1.58452 1.22985 0.98012 0.98856 0.95614 1.22876 0.96778 0.97581 1.00213 1.22922 0.98626 0.95916 0.99584 0.94351 0.91923 0.96460 0.96614 0.91925 0.94418 0.93015 0.95113 0.94885 0.75740 0.87611 0.86861 0.93360 0.94963 0.83847 0.84233 0.89196 0.89697 0.89955 0.90474 0.93706 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 2 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 3 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 4 C -0.53 -28.69 8.01 25.60 0.21 -28.49 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 6 C 0.03 1.54 5.15 84.65 0.44 1.97 16 7 N -0.90 -48.49 9.35 21.45 0.20 -48.29 16 8 Si 0.94 43.23 29.54 68.60 2.03 45.26 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 C 0.15 6.73 4.50 86.38 0.39 7.12 16 13 N -0.72 -25.48 4.96 -463.07 -2.30 -27.78 16 14 C 0.51 17.20 7.32 87.66 0.64 17.84 16 15 O -0.58 -24.05 13.09 -3.01 -0.04 -24.09 16 16 C -0.10 -2.39 4.92 29.85 0.15 -2.24 16 17 C -0.06 -1.35 0.43 -51.65 -0.02 -1.37 16 18 C 0.08 1.82 5.86 86.30 0.51 2.33 16 19 N -0.85 -16.48 8.82 -186.73 -1.65 -18.13 16 20 C -0.12 -1.71 7.00 31.18 0.22 -1.49 16 21 C -0.14 -2.27 7.74 31.18 0.24 -2.03 16 22 C -0.13 -3.08 6.56 31.12 0.20 -2.88 16 23 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 24 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 25 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 28 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 29 H 0.26 13.50 8.31 -92.72 -0.77 12.73 16 30 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.41 12.66 6.16 -92.71 -0.57 12.09 16 33 H 0.11 2.06 7.32 -2.38 -0.02 2.05 16 34 H 0.11 2.42 7.55 -2.39 -0.02 2.40 16 35 H 0.05 1.53 6.56 -2.39 -0.02 1.52 16 36 H 0.03 0.66 8.06 -2.39 -0.02 0.64 16 37 H 0.35 5.03 8.75 -89.69 -0.78 4.25 16 38 H 0.34 5.97 9.08 -89.69 -0.81 5.15 16 39 H 0.09 1.13 8.04 -2.39 -0.02 1.11 16 40 H 0.08 1.00 8.10 -2.39 -0.02 0.98 16 41 H 0.08 1.32 7.61 -2.39 -0.02 1.30 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.04 1.32 6.94 -2.39 -0.02 1.31 16 44 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 Total: -1.00 -62.22 336.12 1.18 -61.04 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -1.16 Total: 28.44 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 4.10 Total: -16.46 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -3.74 Total: -94.19 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.04 Total: -24.09 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -62.22 1.18 -61.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316023318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.842 kcal (2) G-P(sol) polarization free energy of solvation -62.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds