Wall clock time and date at job start Mon Mar 30 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46878 * 2 1 4 4 C 1.50700 * 109.46835 * 240.00282 * 2 1 3 5 5 H 1.07995 * 119.99944 * 239.99591 * 4 2 1 6 6 C 1.37878 * 120.00156 * 59.99827 * 4 2 1 7 7 N 1.31508 * 119.99953 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99895 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46766 * 90.00236 * 8 6 4 10 10 H 1.48503 * 109.47196 * 209.99906 * 8 6 4 11 11 H 1.48500 * 109.47116 * 330.00413 * 8 6 4 12 12 C 1.52998 * 109.47310 * 119.99985 * 2 1 3 13 13 N 1.46496 * 109.47315 * 300.00536 * 12 2 1 14 14 C 1.34773 * 119.99993 * 180.02562 * 13 12 2 15 15 O 1.21284 * 120.00267 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99888 * 179.97438 * 14 13 12 17 17 N 1.46901 * 109.47148 * 179.97438 * 16 14 13 18 18 C 1.46892 * 111.00015 * 180.02562 * 17 16 14 19 19 C 1.54961 * 110.92423 * 91.54340 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29494 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47051 * 299.99477 * 1 2 3 24 24 H 1.08995 * 109.47096 * 59.99777 * 1 2 3 25 25 H 1.09001 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47139 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47576 * 300.00535 * 3 2 1 28 28 H 1.09001 * 109.47364 * 60.00322 * 3 2 1 29 29 H 0.97001 * 119.99813 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47127 * 180.02562 * 12 2 1 31 31 H 1.09005 * 109.46760 * 60.00124 * 12 2 1 32 32 H 0.96998 * 120.00124 * 359.97438 * 13 12 2 33 33 H 1.09005 * 109.46655 * 60.00288 * 16 14 13 34 34 H 1.08993 * 109.47342 * 300.00015 * 16 14 13 35 35 H 1.00904 * 110.99828 * 56.04552 * 17 16 14 36 36 H 1.09001 * 110.67587 * 328.23510 * 18 17 16 37 37 H 1.08997 * 110.47708 * 37.64092 * 19 18 17 38 38 H 1.09002 * 110.53308 * 274.97484 * 19 18 17 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09001 * 110.48482 * 264.93365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4871 -0.1401 -5.1121 11 1 3.6307 -1.7565 -3.7120 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8778 -0.4909 3.6694 15 8 2.5752 -1.4770 3.7807 16 6 1.3758 0.2197 4.9000 17 7 1.8655 -0.4728 6.0994 18 6 1.3944 0.1931 7.3210 19 6 0.0542 -0.4179 7.8027 20 6 0.0123 -0.0943 9.3105 21 6 1.4701 0.1108 9.7579 22 6 2.3484 -0.0959 8.5066 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7089 1.1614 -3.4844 30 1 3.1301 -0.7208 1.2494 31 1 1.6768 -1.7489 1.2492 32 1 0.9943 0.7581 2.3565 33 1 0.2858 0.2196 4.9003 34 1 1.7391 1.2474 4.8997 35 1 2.8720 -0.5432 6.0907 36 1 1.2930 1.2664 7.1596 37 1 0.0478 -1.4961 7.6437 38 1 -0.7857 0.0495 7.2888 39 1 -0.4331 -0.9247 9.8584 40 1 -0.5622 0.8161 9.4811 41 1 1.6034 1.1210 10.1449 42 1 1.7321 -0.6195 10.5235 43 1 3.1820 0.6064 8.5053 44 1 2.7128 -1.1222 8.4616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316061217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:11 Heat of formation + Delta-G solvation = -58.637448 kcal Electronic energy + Delta-G solvation = -20659.602822 eV Core-core repulsion = 17610.763615 eV Total energy + Delta-G solvation = -3048.839207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.41948 -38.37822 -36.37069 -34.22679 -33.24039 -30.91040 -28.97819 -28.46829 -25.96194 -25.72949 -25.27077 -23.86769 -20.76624 -20.26369 -19.95583 -18.77395 -17.04870 -16.31531 -15.88567 -15.60211 -15.31404 -15.03975 -14.59185 -14.12626 -13.97214 -13.44886 -13.26268 -12.96745 -12.77865 -12.20404 -12.09713 -11.94002 -11.46197 -11.36781 -11.30202 -11.21397 -11.18304 -10.87279 -10.85206 -10.69404 -10.61668 -10.38477 -10.20323 -9.63383 -9.52118 -9.20628 -8.78670 -8.51682 -8.42777 -8.27876 -6.02269 -4.12237 3.09720 3.28421 3.35319 3.39017 3.55718 4.19833 4.35954 4.41782 4.47975 4.75359 5.08997 5.14832 5.24533 5.24844 5.28884 5.33060 5.42655 5.45102 5.50852 5.67134 5.72762 5.83535 5.94463 6.06766 6.16036 6.24401 6.34218 6.50915 6.79122 6.82085 6.87824 6.97001 7.02038 7.06022 7.30093 7.35891 7.55539 7.69471 8.00864 8.07933 8.17316 8.38900 8.75260 8.88914 9.53639 10.99181 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.052040 B = 0.003038 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.918095 B = 9213.961179 C = 9386.857882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.133 3.867 13 N -0.719 5.719 14 C 0.502 3.498 15 O -0.540 6.540 16 C 0.040 3.960 17 N -0.665 5.665 18 C 0.079 3.921 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.128 4.128 23 H 0.006 0.994 24 H 0.085 0.915 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.006 0.994 29 H 0.260 0.740 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.397 0.603 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.351 0.649 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 3.064 19.442 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.011 3.989 13 N -0.370 5.370 14 C 0.287 3.713 15 O -0.418 6.418 16 C -0.092 4.092 17 N -0.298 5.298 18 C -0.031 4.031 19 C -0.153 4.153 20 C -0.163 4.163 21 C -0.159 4.159 22 C -0.166 4.166 23 H 0.025 0.975 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.232 0.768 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.171 0.829 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.745 1.999 19.343 19.525 hybrid contribution 0.532 0.782 -0.957 1.346 sum -1.213 2.782 18.386 18.635 Atomic orbital electron populations 1.21832 0.97766 0.99199 1.00055 1.18352 0.92793 0.92721 0.90609 1.21829 0.98550 0.98400 1.00055 1.20997 1.31445 1.12077 0.89918 0.92442 1.24880 0.94880 0.94909 0.98858 1.69801 1.36770 1.22738 1.23214 0.86572 0.79344 0.79388 0.82575 1.20695 1.21271 1.19903 1.21690 0.98019 0.95807 0.83414 1.46297 1.52872 1.31844 1.06023 1.20438 0.81098 0.85068 0.84709 1.90671 1.38196 1.26153 1.86761 1.21876 1.01907 0.95775 0.89690 1.60138 1.17417 1.52595 0.99624 1.22594 0.95582 0.95819 0.89087 1.22403 0.96443 1.02050 0.94382 1.22114 0.96531 1.01335 0.96320 1.22046 0.95000 1.01451 0.97441 1.22537 0.97537 1.02478 0.94018 0.97500 0.89614 0.95428 0.95480 0.89594 0.97536 0.93016 0.92851 0.92761 0.76837 0.88434 0.92655 0.82889 0.92988 0.90432 0.92033 0.91804 0.92054 0.92002 0.91761 0.91814 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 4 C -0.51 -13.30 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.13 2.85 4.50 -4.04 -0.02 2.83 16 13 N -0.72 -12.69 4.96 -60.29 -0.30 -12.99 16 14 C 0.50 8.62 7.87 -10.98 -0.09 8.54 16 15 O -0.54 -11.37 16.20 5.55 0.09 -11.28 16 16 C 0.04 0.51 6.03 -4.97 -0.03 0.48 16 17 N -0.67 -8.25 6.03 -105.84 -0.64 -8.89 16 18 C 0.08 0.78 3.22 -65.68 -0.21 0.56 16 19 C -0.11 -1.08 6.53 -25.03 -0.16 -1.24 16 20 C -0.12 -0.96 6.80 -25.61 -0.17 -1.14 16 21 C -0.12 -0.90 6.80 -25.62 -0.17 -1.07 16 22 C -0.13 -1.09 6.21 -25.07 -0.16 -1.24 16 23 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 24 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 29 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.40 6.26 6.16 -40.82 -0.25 6.01 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.35 4.49 8.13 -39.29 -0.32 4.17 16 36 H 0.05 0.49 7.83 -51.93 -0.41 0.08 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -28.47 343.15 -8.82 -37.28 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.78 Total: 6.35 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.86 Total: -8.28 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.42 Total: -45.00 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.47 -8.82 -37.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316061217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.354 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds