Wall clock time and date at job start Mon Mar 30 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46878 * 2 1 4 4 C 1.50700 * 109.46835 * 240.00282 * 2 1 3 5 5 H 1.07995 * 119.99944 * 239.99591 * 4 2 1 6 6 C 1.37878 * 120.00156 * 59.99827 * 4 2 1 7 7 N 1.31508 * 119.99953 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99895 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46766 * 90.00236 * 8 6 4 10 10 H 1.48503 * 109.47196 * 209.99906 * 8 6 4 11 11 H 1.48500 * 109.47116 * 330.00413 * 8 6 4 12 12 C 1.52998 * 109.47310 * 119.99985 * 2 1 3 13 13 N 1.46496 * 109.47315 * 300.00536 * 12 2 1 14 14 C 1.34773 * 119.99993 * 180.02562 * 13 12 2 15 15 O 1.21284 * 120.00267 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99888 * 179.97438 * 14 13 12 17 17 N 1.46901 * 109.47148 * 179.97438 * 16 14 13 18 18 C 1.46892 * 111.00015 * 180.02562 * 17 16 14 19 19 C 1.54961 * 110.92423 * 91.54340 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29494 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47051 * 299.99477 * 1 2 3 24 24 H 1.08995 * 109.47096 * 59.99777 * 1 2 3 25 25 H 1.09001 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47139 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47576 * 300.00535 * 3 2 1 28 28 H 1.09001 * 109.47364 * 60.00322 * 3 2 1 29 29 H 0.97001 * 119.99813 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47127 * 180.02562 * 12 2 1 31 31 H 1.09005 * 109.46760 * 60.00124 * 12 2 1 32 32 H 0.96998 * 120.00124 * 359.97438 * 13 12 2 33 33 H 1.09005 * 109.46655 * 60.00288 * 16 14 13 34 34 H 1.08993 * 109.47342 * 300.00015 * 16 14 13 35 35 H 1.00904 * 110.99828 * 56.04552 * 17 16 14 36 36 H 1.09001 * 110.67587 * 328.23510 * 18 17 16 37 37 H 1.08997 * 110.47708 * 37.64092 * 19 18 17 38 38 H 1.09002 * 110.53308 * 274.97484 * 19 18 17 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09001 * 110.48482 * 264.93365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4871 -0.1401 -5.1121 11 1 3.6307 -1.7565 -3.7120 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8778 -0.4909 3.6694 15 8 2.5752 -1.4770 3.7807 16 6 1.3758 0.2197 4.9000 17 7 1.8655 -0.4728 6.0994 18 6 1.3944 0.1931 7.3210 19 6 0.0542 -0.4179 7.8027 20 6 0.0123 -0.0943 9.3105 21 6 1.4701 0.1108 9.7579 22 6 2.3484 -0.0959 8.5066 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7089 1.1614 -3.4844 30 1 3.1301 -0.7208 1.2494 31 1 1.6768 -1.7489 1.2492 32 1 0.9943 0.7581 2.3565 33 1 0.2858 0.2196 4.9003 34 1 1.7391 1.2474 4.8997 35 1 2.8720 -0.5432 6.0907 36 1 1.2930 1.2664 7.1596 37 1 0.0478 -1.4961 7.6437 38 1 -0.7857 0.0495 7.2888 39 1 -0.4331 -0.9247 9.8584 40 1 -0.5622 0.8161 9.4811 41 1 1.6034 1.1210 10.1449 42 1 1.7321 -0.6195 10.5235 43 1 3.1820 0.6064 8.5053 44 1 2.7128 -1.1222 8.4616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316061217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:11 Heat of formation + Delta-G solvation = -76.459981 kcal Electronic energy + Delta-G solvation = -20660.375665 eV Core-core repulsion = 17610.763615 eV Total energy + Delta-G solvation = -3049.612050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.77902 -39.23277 -38.08444 -35.15899 -34.96362 -32.74257 -29.72548 -29.36257 -27.55938 -27.48516 -26.96993 -25.18958 -21.67487 -21.20423 -20.91828 -20.58213 -18.41228 -17.67575 -17.15521 -16.91612 -16.59416 -16.36079 -15.98664 -15.40192 -14.97166 -14.84423 -14.51823 -14.33997 -14.10747 -13.97283 -13.31542 -13.10762 -13.06026 -12.76428 -12.66626 -12.59494 -12.24668 -12.14092 -12.08283 -11.95348 -11.90863 -11.58597 -11.48103 -11.26942 -11.20842 -10.79525 -10.65368 -10.40038 -9.91779 -9.37651 -8.02841 -6.18514 1.41931 1.44830 1.53023 1.73716 2.25629 2.48176 3.20735 3.25695 3.66729 3.81889 3.92091 4.11132 4.33083 4.43160 4.45033 4.48464 4.53431 4.57944 4.70291 4.72189 4.78416 4.84564 5.00305 5.01402 5.06228 5.11515 5.13906 5.19965 5.24199 5.26691 5.36886 5.38181 5.53222 5.61546 5.67027 5.67615 6.06090 6.15758 6.22085 6.36242 6.43694 6.73942 6.85895 7.38143 7.49284 8.96020 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.052040 B = 0.003038 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.918095 B = 9213.961179 C = 9386.857882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.150 3.850 13 N -0.712 5.712 14 C 0.501 3.499 15 O -0.583 6.583 16 C 0.052 3.948 17 N -0.682 5.682 18 C 0.079 3.921 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.127 4.127 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.260 0.740 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.409 0.591 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.346 0.654 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.278 4.318 20.921 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.201 1.201 12 C 0.025 3.975 13 N -0.364 5.364 14 C 0.288 3.712 15 O -0.463 6.463 16 C -0.080 4.080 17 N -0.315 5.315 18 C -0.031 4.031 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.157 4.157 22 C -0.165 4.165 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.246 0.754 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.166 0.834 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.366 3.280 20.839 21.228 hybrid contribution 0.720 0.369 -1.389 1.608 sum -1.645 3.649 19.451 19.858 Atomic orbital electron populations 1.21679 0.97114 0.98622 1.00489 1.18346 0.93244 0.93058 0.90241 1.21671 0.97897 0.97795 1.00496 1.21292 1.31727 1.12149 0.91711 0.93899 1.25442 0.95160 0.95583 1.00938 1.69901 1.37026 1.23225 1.23615 0.85774 0.78647 0.78522 0.79953 1.20506 1.20719 1.20148 1.21217 0.96836 0.94968 0.84435 1.46116 1.53026 1.32016 1.05279 1.21278 0.79925 0.84473 0.85537 1.90656 1.40076 1.28207 1.87346 1.21840 1.02712 0.96207 0.87262 1.60150 1.17216 1.53649 1.00465 1.22679 0.95890 0.96215 0.88266 1.22402 0.96449 1.00799 0.95788 1.22107 0.96968 1.01967 0.94983 1.22052 0.94414 1.02316 0.96931 1.22526 0.97826 1.01960 0.94146 0.94234 0.91884 0.96462 0.96355 0.91900 0.94224 0.93004 0.94560 0.94738 0.75387 0.86642 0.89877 0.83422 0.91750 0.92385 0.91661 0.91549 0.90954 0.90835 0.91325 0.90990 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.08 71.98 0.58 -4.78 16 2 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 3 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 4 C -0.53 -28.25 8.01 25.60 0.21 -28.04 16 5 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 6 C 0.03 1.51 5.15 84.66 0.44 1.94 16 7 N -0.90 -47.91 9.35 21.45 0.20 -47.71 16 8 Si 0.94 42.78 29.54 68.60 2.03 44.80 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.15 6.40 4.50 86.38 0.39 6.79 16 13 N -0.71 -24.04 4.96 -463.06 -2.30 -26.33 16 14 C 0.50 16.53 7.87 87.66 0.69 17.22 16 15 O -0.58 -24.52 16.20 -3.04 -0.05 -24.57 16 16 C 0.05 1.17 6.03 85.56 0.52 1.69 16 17 N -0.68 -15.84 6.03 -488.78 -2.95 -18.79 16 18 C 0.08 1.37 3.22 46.24 0.15 1.52 16 19 C -0.12 -1.98 6.53 31.70 0.21 -1.77 16 20 C -0.12 -1.60 6.80 31.32 0.21 -1.39 16 21 C -0.12 -1.48 6.80 31.32 0.21 -1.27 16 22 C -0.13 -1.93 6.21 31.67 0.20 -1.74 16 23 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 24 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 25 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 28 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 29 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.41 11.73 6.16 -92.71 -0.57 11.16 16 33 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 35 H 0.35 8.53 8.13 -89.69 -0.73 7.80 16 36 H 0.06 0.99 7.83 -2.39 -0.02 0.97 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -61.47 343.15 0.96 -60.51 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -0.33 Total: 24.28 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 4.35 Total: -12.19 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -5.04 Total: -92.84 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -61.47 0.96 -60.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316061217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.952 kcal (2) G-P(sol) polarization free energy of solvation -61.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds