Wall clock time and date at job start Mon Mar 30 2020 05:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46667 * 2 1 4 4 C 1.50694 * 109.47409 * 120.00128 * 2 1 3 5 5 H 1.08000 * 119.99725 * 119.85456 * 4 2 1 6 6 C 1.37876 * 120.00135 * 299.85184 * 4 2 1 7 7 N 1.31512 * 120.00227 * 1.61313 * 6 4 2 8 8 Si 1.86798 * 119.99946 * 181.61900 * 6 4 2 9 9 H 1.48504 * 109.47206 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47044 * 299.99818 * 8 6 4 11 11 H 1.48497 * 109.47530 * 59.99719 * 8 6 4 12 12 C 1.53000 * 109.46954 * 240.00417 * 2 1 3 13 13 N 1.46503 * 109.47210 * 59.99660 * 12 2 1 14 14 C 1.34779 * 120.00059 * 179.97438 * 13 12 2 15 15 O 1.21286 * 119.99853 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99802 * 179.97438 * 14 13 12 17 17 H 1.08996 * 110.01851 * 30.82941 * 16 14 13 18 18 C 1.54270 * 110.03047 * 152.22578 * 16 14 13 19 19 C 1.54889 * 104.19738 * 142.89542 * 18 16 14 20 20 C 1.54895 * 102.74591 * 322.05403 * 19 18 16 21 21 C 1.53873 * 110.03182 * 269.38846 * 16 14 13 22 22 H 1.09002 * 110.03565 * 121.43498 * 21 16 14 23 23 C 1.53001 * 110.03274 * 0.02562 * 21 16 14 24 24 N 1.46908 * 109.46915 * 175.00884 * 23 21 16 25 25 H 1.09004 * 109.46922 * 292.28060 * 1 2 3 26 26 H 1.08996 * 109.47694 * 52.28455 * 1 2 3 27 27 H 1.09000 * 109.46865 * 172.28748 * 1 2 3 28 28 H 1.09008 * 109.46741 * 187.97518 * 3 2 1 29 29 H 1.08999 * 109.47338 * 307.97653 * 3 2 1 30 30 H 1.09001 * 109.46603 * 67.98196 * 3 2 1 31 31 H 0.97006 * 119.99297 * 356.66988 * 7 6 4 32 32 H 1.09003 * 109.47083 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.47272 * 299.99445 * 12 2 1 34 34 H 0.96995 * 119.99700 * 0.02562 * 13 12 2 35 35 H 1.09001 * 110.47923 * 261.57411 * 18 16 14 36 36 H 1.08998 * 110.48499 * 24.21050 * 18 16 14 37 37 H 1.08998 * 110.75816 * 80.36998 * 19 18 16 38 38 H 1.09000 * 110.75195 * 203.56108 * 19 18 16 39 39 H 1.09001 * 110.48323 * 156.62450 * 20 19 18 40 40 H 1.08998 * 110.48297 * 279.26736 * 20 19 18 41 41 H 1.08994 * 109.47229 * 295.00419 * 23 21 16 42 42 H 1.08994 * 109.46929 * 55.00975 * 23 21 16 43 43 H 1.00894 * 111.00305 * 56.04425 * 24 23 21 44 44 H 1.00898 * 110.99660 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6514 -1.5898 1.1312 6 6 1.7019 -0.2376 2.4827 7 7 0.9222 0.8145 2.6037 8 14 2.3617 -1.0915 4.0074 9 1 1.8640 -0.3935 5.2201 10 1 1.8999 -2.5028 4.0234 11 1 3.8462 -1.0566 3.9911 12 6 2.0400 -0.7212 -1.2493 13 7 1.5515 -0.0305 -2.4454 14 6 1.8775 -0.4906 -3.6696 15 8 2.5748 -1.4767 -3.7809 16 6 1.3746 0.2195 -4.9000 17 1 1.2634 1.2846 -4.6968 18 6 2.3546 0.0046 -6.0718 19 6 1.4384 -0.1314 -7.3132 20 6 0.2341 -0.9351 -6.7628 21 6 0.0264 -0.3779 -5.3393 22 1 -0.7399 0.3973 -5.3499 23 6 -0.3818 -1.5055 -4.3890 24 7 -1.7230 -1.9862 -4.7472 25 1 -0.3633 0.3896 0.9510 26 1 -0.3634 0.6286 -0.8129 27 1 -0.3633 -1.0184 -0.1379 28 1 3.1206 1.4459 -0.1426 29 1 1.5648 1.9959 -0.8101 30 1 1.7977 1.9135 0.9527 31 1 0.6190 1.2869 1.8126 32 1 3.1300 -0.7208 -1.2496 33 1 1.6767 -1.7489 -1.2493 34 1 0.9942 0.7583 -2.3563 35 1 3.0163 0.8642 -6.1783 36 1 2.9332 -0.9071 -5.9229 37 1 1.1193 0.8490 -7.6671 38 1 1.9430 -0.6817 -8.1073 39 1 -0.6518 -0.7612 -7.3736 40 1 0.4703 -1.9985 -6.7255 41 1 0.3318 -2.3254 -4.4704 42 1 -0.3911 -1.1321 -3.3651 43 1 -1.7567 -2.2779 -5.7124 44 1 -2.0157 -2.7316 -4.1334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316067478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:07 Heat of formation + Delta-G solvation = -57.830329 kcal Electronic energy + Delta-G solvation = -21875.391799 eV Core-core repulsion = 18826.587592 eV Total energy + Delta-G solvation = -3048.804207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32143 -37.76406 -36.54200 -34.15614 -33.53179 -30.78870 -29.35591 -28.71453 -26.06214 -25.96864 -24.50592 -23.68455 -21.41467 -20.68139 -19.19092 -18.87471 -17.19867 -16.54799 -16.22859 -15.61476 -15.39718 -14.71370 -14.51499 -14.05843 -13.75782 -13.56125 -13.15825 -12.82759 -12.72629 -12.66360 -12.57114 -11.71820 -11.57113 -11.28442 -11.19271 -11.16603 -10.92470 -10.80923 -10.75215 -10.66598 -10.62263 -10.60913 -10.09716 -9.89842 -9.57261 -9.39152 -8.77034 -8.46893 -8.42956 -8.30818 -6.27032 -4.12288 2.97702 3.43177 3.43748 3.62362 3.67335 4.30602 4.40598 4.50590 4.57096 4.84139 5.18764 5.22010 5.25571 5.31987 5.39705 5.42575 5.49073 5.56790 5.74785 5.79711 5.87108 5.94988 5.98936 6.08174 6.15901 6.22475 6.25431 6.29779 6.56141 6.60416 6.70473 6.77705 6.88584 7.03794 7.06603 7.09720 7.34955 7.49253 7.64983 7.99903 8.17974 8.37702 8.64272 8.82436 9.58536 10.98865 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031614 B = 0.004496 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.464668 B = 6226.063627 C = 6495.387622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 C -0.144 4.144 4 C -0.585 4.585 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.917 5.917 8 Si 1.065 2.935 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.288 1.288 12 C 0.140 3.860 13 N -0.720 5.720 14 C 0.514 3.486 15 O -0.551 6.551 16 C -0.112 4.112 17 H 0.089 0.911 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.075 4.075 22 H 0.086 0.914 23 C 0.053 3.947 24 N -0.848 5.848 25 H 0.073 0.927 26 H 0.016 0.984 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.281 0.719 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.397 0.603 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.080 0.920 43 H 0.335 0.665 44 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 -0.257 -16.761 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.040 3.960 3 C -0.202 4.202 4 C -0.624 4.624 5 H 0.069 0.931 6 C -0.178 4.178 7 N -0.557 5.557 8 Si 0.893 3.107 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.215 1.215 12 C 0.018 3.982 13 N -0.370 5.370 14 C 0.300 3.700 15 O -0.430 6.430 16 C -0.134 4.134 17 H 0.108 0.892 18 C -0.151 4.151 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.094 4.094 22 H 0.105 0.895 23 C -0.077 4.077 24 N -0.377 5.377 25 H 0.092 0.908 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.232 0.768 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.147 0.853 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.243 -0.191 -14.957 15.126 hybrid contribution 0.287 -0.540 -1.718 1.824 sum -1.956 -0.731 -16.675 16.806 Atomic orbital electron populations 1.22060 0.98259 0.99189 1.00763 1.18519 0.92323 0.92684 0.92425 1.22054 0.99215 0.98354 1.00624 1.21743 1.35317 1.14089 0.91244 0.93100 1.25659 0.94638 0.96529 1.00962 1.70880 1.31362 1.18841 1.34649 0.83605 0.75932 0.75423 0.75720 1.20825 1.21505 1.21490 1.21570 0.98117 0.95578 0.82967 1.46415 1.52653 1.31818 1.06119 1.20382 0.80038 0.84814 0.84760 1.90645 1.38748 1.26802 1.86809 1.22019 0.96464 1.00526 0.94387 0.89219 1.22359 0.97048 1.03241 0.92429 1.22466 0.96089 1.00094 0.97306 1.22435 0.98224 0.99783 0.95204 1.21690 0.95002 0.97916 0.94784 0.89517 1.22149 0.89228 0.96753 0.99620 1.58746 1.26981 1.44004 1.08002 0.90812 0.96539 0.94613 0.94514 0.96492 0.91035 0.90301 0.92674 0.92769 0.76847 0.91495 0.89548 0.91478 0.91440 0.91353 0.91705 0.94480 0.90162 0.85269 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 7.88 37.16 0.29 -2.92 16 2 C 0.04 0.95 0.50 -155.66 -0.08 0.87 16 3 C -0.14 -3.19 7.87 37.16 0.29 -2.90 16 4 C -0.59 -15.59 8.01 -34.44 -0.28 -15.86 16 5 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 6 C 0.03 0.71 5.10 -17.82 -0.09 0.61 16 7 N -0.92 -25.79 12.11 55.43 0.67 -25.12 16 8 Si 1.06 24.46 29.90 -169.99 -5.08 19.38 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.14 2.96 4.49 -4.04 -0.02 2.94 16 13 N -0.72 -12.46 4.30 -60.29 -0.26 -12.72 16 14 C 0.51 8.59 4.73 -10.99 -0.05 8.54 16 15 O -0.55 -11.12 15.13 5.55 0.08 -11.04 16 16 C -0.11 -1.41 3.29 -90.65 -0.30 -1.71 16 17 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 18 C -0.11 -1.31 6.31 -25.07 -0.16 -1.47 16 19 C -0.12 -1.13 6.91 -24.74 -0.17 -1.30 16 20 C -0.12 -1.17 5.56 -25.07 -0.14 -1.31 16 21 C -0.07 -0.86 3.15 -89.50 -0.28 -1.14 16 22 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 23 C 0.05 0.71 4.96 -3.82 -0.02 0.69 16 24 N -0.85 -9.65 9.62 -10.37 -0.10 -9.75 16 25 H 0.07 1.82 5.19 -51.93 -0.27 1.55 16 26 H 0.02 0.31 7.05 -51.93 -0.37 -0.06 16 27 H 0.03 0.79 8.13 -51.93 -0.42 0.36 16 28 H 0.04 0.80 8.13 -51.92 -0.42 0.38 16 29 H 0.02 0.31 7.05 -51.93 -0.37 -0.06 16 30 H 0.07 1.75 5.26 -51.93 -0.27 1.48 16 31 H 0.28 7.63 3.58 -40.82 -0.15 7.49 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.40 6.27 6.31 -40.82 -0.26 6.01 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.20 6.84 -51.93 -0.36 0.85 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.68 7.76 -51.93 -0.40 0.28 16 41 H 0.04 0.57 7.23 -51.93 -0.38 0.19 16 42 H 0.08 1.25 6.68 -51.93 -0.35 0.90 16 43 H 0.34 3.20 8.23 -39.29 -0.32 2.88 16 44 H 0.34 3.66 9.08 -39.29 -0.36 3.31 16 LS Contribution 330.56 15.07 4.98 4.98 Total: -1.00 -29.47 330.56 -7.97 -37.44 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -7.27 Total: 11.79 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.00 Total: -14.96 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.31 Total: -47.59 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.08 Total: 19.38 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.47 -7.97 -37.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316067478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.392 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds