Wall clock time and date at job start Mon Mar 30 2020 05:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46733 * 2 1 4 4 C 1.50699 * 109.47155 * 240.00542 * 2 1 3 5 5 H 1.07999 * 120.00019 * 239.99808 * 4 2 1 6 6 C 1.37877 * 120.00129 * 59.99523 * 4 2 1 7 7 N 1.31516 * 120.00113 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00167 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 59.99928 * 8 6 4 10 10 H 1.48506 * 109.47081 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46734 * 299.99975 * 8 6 4 12 12 C 1.52997 * 109.47452 * 120.00374 * 2 1 3 13 13 N 1.46500 * 109.47007 * 300.00097 * 12 2 1 14 14 C 1.34775 * 119.99770 * 179.97438 * 13 12 2 15 15 O 1.21277 * 120.00326 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99841 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47128 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47415 * 59.99994 * 18 17 16 20 20 N 1.46906 * 109.46907 * 59.99794 * 19 18 17 21 21 C 1.53002 * 109.46978 * 300.00098 * 19 18 17 22 22 C 1.53002 * 109.47454 * 59.99922 * 21 19 18 23 23 H 1.08998 * 109.47061 * 299.98958 * 1 2 3 24 24 H 1.09000 * 109.47360 * 59.99776 * 1 2 3 25 25 H 1.09002 * 109.46668 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46976 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47878 * 300.00216 * 3 2 1 28 28 H 1.09001 * 109.46989 * 60.00699 * 3 2 1 29 29 H 0.96999 * 120.00366 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.46952 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.46695 * 59.99734 * 12 2 1 32 32 H 0.97005 * 119.99837 * 0.02562 * 13 12 2 33 33 H 1.09002 * 109.47485 * 300.00265 * 16 14 13 34 34 H 1.08996 * 109.46698 * 59.99930 * 17 16 14 35 35 H 1.09002 * 109.47097 * 299.99949 * 17 16 14 36 36 H 1.09002 * 109.47070 * 299.99941 * 18 17 16 37 37 H 1.09000 * 109.46986 * 180.02562 * 18 17 16 38 38 H 1.08992 * 109.47280 * 180.02562 * 19 18 17 39 39 H 1.00900 * 110.99744 * 180.02562 * 20 19 18 40 40 H 1.00907 * 110.99952 * 303.95213 * 20 19 18 41 41 H 1.09004 * 109.47006 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.47097 * 299.99801 * 21 19 18 43 43 H 1.09000 * 109.47312 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.47067 * 59.99861 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8259 -2.5199 -4.0080 10 1 1.8268 -0.4195 -5.2205 11 1 3.8064 -1.1205 -4.0083 12 6 2.0401 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8770 -0.4916 3.6694 15 8 2.5743 -1.4777 3.7806 16 6 1.3743 0.2183 4.8999 17 6 1.8844 -0.5029 6.1492 18 6 1.3734 0.2176 7.3984 19 6 -0.1566 0.2164 7.3980 20 7 -0.6451 -1.1690 7.3974 21 6 -0.6667 0.9376 6.1487 22 6 -0.1558 0.2172 4.8994 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9565 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 0.7094 1.1620 -3.4843 30 1 3.1301 -0.7209 1.2493 31 1 1.6767 -1.7490 1.2491 32 1 0.9938 0.7577 2.3564 33 1 1.7374 1.2461 4.9004 34 1 2.9744 -0.5023 6.1492 35 1 1.5215 -1.5307 6.1490 36 1 1.7359 1.2456 7.3989 37 1 1.7372 -0.2959 8.2884 38 1 -0.5206 0.7301 8.2877 39 1 -1.6538 -1.1967 7.3966 40 1 -0.2690 -1.6848 6.6159 41 1 -1.7568 0.9364 6.1482 42 1 -0.3042 1.9656 6.1491 43 1 -0.5196 0.7307 4.0094 44 1 -0.5183 -0.8108 4.8990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316096404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:19 Heat of formation + Delta-G solvation = -87.083932 kcal Electronic energy + Delta-G solvation = -21551.197116 eV Core-core repulsion = 18501.124377 eV Total energy + Delta-G solvation = -3050.072739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33413 -39.38340 -38.04037 -35.04395 -33.90428 -32.65565 -31.65272 -29.62749 -27.58130 -27.48492 -26.79188 -24.12381 -23.49203 -21.32113 -20.61464 -19.92761 -18.43861 -17.71791 -17.29410 -16.72561 -16.50824 -16.39051 -15.65259 -15.25677 -15.08778 -14.79416 -14.73246 -14.14807 -14.08009 -13.67829 -13.49459 -13.21368 -13.11537 -13.07600 -12.81676 -12.65787 -12.63574 -12.26503 -12.14648 -12.08009 -11.64037 -11.50136 -11.46193 -11.30435 -11.12457 -10.76177 -10.56323 -10.40667 -9.93037 -9.51092 -8.03474 -6.19338 1.43003 1.44276 1.50815 1.70194 2.32799 2.49951 3.20004 3.63501 3.66785 3.77292 3.87715 4.19518 4.24850 4.28782 4.44846 4.48640 4.49387 4.53416 4.54685 4.69479 4.78439 4.91020 4.98071 5.03729 5.09240 5.10407 5.17172 5.18391 5.20118 5.30875 5.35781 5.37218 5.47795 5.60073 5.65554 5.65650 6.13710 6.20152 6.33264 6.42257 6.62529 6.68837 6.84404 7.34311 7.48385 8.95120 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039993 B = 0.003920 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.961267 B = 7141.292722 C = 7374.817499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.532 4.532 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.147 3.853 13 N -0.709 5.709 14 C 0.503 3.497 15 O -0.594 6.594 16 C -0.096 4.096 17 C -0.097 4.097 18 C -0.107 4.107 19 C 0.090 3.910 20 N -0.854 5.854 21 C -0.145 4.145 22 C -0.110 4.110 23 H 0.037 0.963 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.261 0.739 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.408 0.592 33 H 0.116 0.884 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.345 0.655 40 H 0.337 0.663 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.032 4.278 17.425 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.360 5.360 14 C 0.291 3.709 15 O -0.475 6.475 16 C -0.117 4.117 17 C -0.135 4.135 18 C -0.144 4.144 19 C -0.022 4.022 20 N -0.386 5.386 21 C -0.184 4.184 22 C -0.148 4.148 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.245 0.755 33 H 0.133 0.867 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.252 3.635 18.042 18.889 hybrid contribution -0.077 -0.204 -2.373 2.383 sum -4.329 3.430 15.669 16.614 Atomic orbital electron populations 1.21651 0.97006 0.98577 1.00402 1.18355 0.93324 0.93034 0.90259 1.21662 0.97843 0.97816 1.00419 1.21248 1.31856 1.12218 0.91690 0.93932 1.25432 0.95101 0.95580 1.00887 1.69891 1.36882 1.23184 1.23688 0.85840 0.78616 0.78837 0.79651 1.20303 1.20692 1.20329 1.21242 0.96827 0.95022 0.84607 1.46171 1.52668 1.31857 1.05352 1.21451 0.79490 0.84264 0.85720 1.90644 1.40485 1.28773 1.87591 1.21379 0.97879 1.01245 0.91218 1.21279 1.00255 0.99096 0.92871 1.21569 0.94890 1.01255 0.96715 1.21489 0.94771 0.88680 0.97225 1.59032 1.14170 1.13600 1.51753 1.22310 1.01219 1.00773 0.94106 1.21526 0.91834 1.01378 1.00076 0.94373 0.91887 0.96448 0.96450 0.91859 0.94380 0.92985 0.94679 0.94652 0.75497 0.86659 0.92667 0.92637 0.89910 0.91226 0.88979 0.84148 0.84862 0.90593 0.89793 0.90744 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 4 C -0.53 -28.22 8.01 25.60 0.21 -28.01 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.58 5.15 84.65 0.44 2.01 16 7 N -0.90 -47.57 9.35 21.45 0.20 -47.37 16 8 Si 0.94 42.57 29.54 68.60 2.03 44.60 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.15 6.30 4.50 86.38 0.39 6.69 16 13 N -0.71 -24.05 4.85 -463.07 -2.25 -26.29 16 14 C 0.50 16.61 7.15 87.66 0.63 17.23 16 15 O -0.59 -24.89 15.98 -3.02 -0.05 -24.94 16 16 C -0.10 -2.14 2.53 -11.54 -0.03 -2.17 16 17 C -0.10 -2.16 4.23 30.60 0.13 -2.03 16 18 C -0.11 -1.71 5.64 30.59 0.17 -1.54 16 19 C 0.09 1.27 3.69 44.91 0.17 1.44 16 20 N -0.85 -13.95 9.12 -168.68 -1.54 -15.49 16 21 C -0.14 -1.89 5.61 30.60 0.17 -1.72 16 22 C -0.11 -2.00 4.84 30.60 0.15 -1.86 16 23 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 24 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 25 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 28 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 29 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 30 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.41 11.92 5.58 -92.70 -0.52 11.40 16 33 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 35 H 0.05 1.42 6.53 -2.39 -0.02 1.41 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 39 H 0.35 4.58 9.04 -89.69 -0.81 3.77 16 40 H 0.34 6.38 5.44 -89.69 -0.49 5.89 16 41 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 1.33 7.57 -2.39 -0.02 1.31 16 44 H 0.06 1.13 6.76 -2.39 -0.02 1.12 16 Total: -1.00 -60.88 330.52 1.13 -59.75 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -0.81 Total: 26.69 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 3.55 Total: -16.94 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -3.58 Total: -89.16 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -60.88 1.13 -59.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316096404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.333 kcal (2) G-P(sol) polarization free energy of solvation -60.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds