Wall clock time and date at job start Mon Mar 30 2020 05:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00361 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47491 * 119.99896 * 8 6 4 11 11 H 1.48511 * 109.47242 * 239.99873 * 8 6 4 12 12 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 13 13 N 1.46499 * 109.47555 * 300.00682 * 12 2 1 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 N 1.46902 * 110.01590 * 58.60368 * 17 16 14 19 19 C 1.54268 * 110.02867 * 297.16687 * 17 16 14 20 20 C 1.54899 * 104.19366 * 217.10432 * 19 17 16 21 21 C 1.54892 * 102.74568 * 37.94090 * 20 19 17 22 22 C 1.53872 * 110.03635 * 179.97438 * 17 16 14 23 23 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 24 24 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 25 25 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 28 28 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 29 29 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47382 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.47216 * 60.00680 * 12 2 1 32 32 H 0.97000 * 119.99484 * 359.97438 * 13 12 2 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.00901 * 111.00470 * 300.70216 * 18 17 16 36 36 H 1.00900 * 110.99819 * 64.66166 * 18 17 16 37 37 H 1.08996 * 110.48926 * 335.77956 * 19 17 16 38 38 H 1.09005 * 110.48923 * 98.43089 * 19 17 16 39 39 H 1.09004 * 110.75265 * 279.62715 * 20 19 17 40 40 H 1.09002 * 110.91285 * 156.32985 * 20 19 17 41 41 H 1.09001 * 110.48273 * 203.37633 * 21 20 19 42 42 H 1.08998 * 110.48153 * 80.74020 * 21 20 19 43 43 H 1.09001 * 110.03440 * 238.57193 * 22 17 16 44 44 H 1.09006 * 110.02647 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3214 -1.1201 -4.0079 9 1 3.1466 -2.2868 -3.6038 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5751 -1.4769 3.7807 16 6 1.3702 0.2159 4.9000 17 6 1.8762 -0.5082 6.1492 18 7 3.3448 -0.5431 6.1499 19 6 1.3125 -1.9436 6.1927 20 6 1.0352 -2.1974 7.6953 21 6 0.5087 -0.8245 8.1823 22 6 1.3657 0.2036 7.4143 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9565 -0.8899 28 1 1.6765 1.9563 0.8901 29 1 0.7081 1.1609 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6768 -1.7489 1.2493 32 1 0.9942 0.7581 2.3564 33 1 1.7326 1.2439 4.9041 34 1 0.2803 0.2149 4.8959 35 1 3.6958 -1.0170 5.3312 36 1 3.7285 0.3874 6.2215 37 1 0.3886 -2.0082 5.6181 38 1 2.0481 -2.6539 5.8152 39 1 1.9535 -2.4663 8.2175 40 1 0.2777 -2.9701 7.8261 41 1 0.6577 -0.7182 9.2569 42 1 -0.5450 -0.7084 7.9290 43 1 2.2076 0.5221 8.0290 44 1 0.7577 1.0652 7.1382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316124285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:59 Heat of formation + Delta-G solvation = -62.808369 kcal Electronic energy + Delta-G solvation = -21441.755747 eV Core-core repulsion = 18392.735676 eV Total energy + Delta-G solvation = -3049.020071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.07078 -38.10114 -36.32224 -33.35718 -32.84747 -31.03838 -29.20797 -28.72467 -26.01598 -25.77882 -25.35206 -24.21714 -20.82166 -20.29555 -19.15250 -18.71411 -17.03286 -15.99512 -15.59526 -15.36730 -15.10186 -15.08740 -14.65440 -14.45761 -13.68373 -13.24594 -13.16782 -12.99070 -12.82558 -12.24803 -12.10667 -11.49019 -11.39198 -11.24121 -11.14383 -11.08867 -10.94025 -10.86313 -10.73655 -10.68648 -10.54478 -10.43189 -10.23622 -9.68565 -9.54999 -9.26430 -8.82484 -8.57158 -8.46580 -8.34173 -6.05902 -4.16026 2.97136 3.24670 3.33427 3.37848 3.69628 4.37140 4.50769 4.57658 4.66261 4.95244 5.13384 5.21044 5.22070 5.23909 5.49484 5.57674 5.61205 5.68762 5.81702 5.88525 6.02117 6.05068 6.14601 6.20005 6.27885 6.36901 6.42325 6.45784 6.72606 6.76917 6.88147 6.96606 6.97113 7.30148 7.41284 7.50754 7.65660 7.72644 7.96125 8.00018 8.10807 8.34410 8.65677 8.85033 9.50122 10.95550 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042339 B = 0.003727 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.169547 B = 7511.449516 C = 7647.267763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.132 3.868 13 N -0.716 5.716 14 C 0.503 3.497 15 O -0.549 6.549 16 C -0.174 4.174 17 C 0.136 3.864 18 N -0.839 5.839 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.116 4.116 23 H 0.005 0.995 24 H 0.086 0.914 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.086 0.914 28 H 0.005 0.995 29 H 0.259 0.741 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.397 0.603 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.360 0.640 36 H 0.328 0.672 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 1.357 16.532 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.009 3.991 13 N -0.365 5.365 14 C 0.289 3.711 15 O -0.429 6.429 16 C -0.217 4.217 17 C 0.042 3.958 18 N -0.375 5.375 19 C -0.141 4.141 20 C -0.159 4.159 21 C -0.159 4.159 22 C -0.154 4.154 23 H 0.024 0.976 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.232 0.768 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.180 0.820 36 H 0.140 0.860 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.460 0.315 17.070 17.135 hybrid contribution -0.118 0.668 -1.941 2.056 sum -1.578 0.983 15.129 15.243 Atomic orbital electron populations 1.21825 0.97765 0.99153 1.00050 1.18362 0.92794 0.92742 0.90658 1.21825 0.98530 0.98376 1.00045 1.21023 1.31435 1.12096 0.89885 0.92399 1.24886 0.94843 0.94924 0.98899 1.69814 1.36681 1.22809 1.23149 0.86512 0.78657 0.79763 0.82941 1.19739 1.21029 1.21044 1.21711 0.98061 0.95796 0.83529 1.46383 1.52355 1.31624 1.06188 1.20598 0.80840 0.84766 0.84910 1.90559 1.39024 1.26641 1.86627 1.22707 1.03212 1.00848 0.94907 1.21127 0.88576 0.95001 0.91063 1.59148 1.05265 1.22808 1.50275 1.22334 1.00382 0.95729 0.95640 1.22466 1.00581 0.96406 0.96425 1.22314 0.98999 0.95289 0.99315 1.22277 0.99508 0.97746 0.95830 0.97578 0.89581 0.95464 0.95491 0.89576 0.97606 0.93047 0.92784 0.92742 0.76771 0.89529 0.88889 0.81961 0.86033 0.92175 0.90128 0.91286 0.92184 0.91969 0.91950 0.90870 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.51 -13.15 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.43 9.35 55.43 0.52 -22.91 16 8 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 C 0.13 2.73 4.50 -4.04 -0.02 2.71 16 13 N -0.72 -12.18 4.96 -60.29 -0.30 -12.48 16 14 C 0.50 8.05 7.37 -10.98 -0.08 7.97 16 15 O -0.55 -10.29 12.37 5.55 0.07 -10.22 16 16 C -0.17 -2.08 4.58 -27.88 -0.13 -2.21 16 17 C 0.14 1.61 0.81 -130.48 -0.11 1.51 16 18 N -0.84 -10.68 8.71 1.64 0.01 -10.66 16 19 C -0.10 -1.32 4.89 -25.07 -0.12 -1.45 16 20 C -0.12 -1.29 6.91 -24.73 -0.17 -1.46 16 21 C -0.12 -1.13 6.83 -25.05 -0.17 -1.30 16 22 C -0.12 -1.13 6.21 -25.59 -0.16 -1.29 16 23 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 24 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 28 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 29 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.40 6.19 6.16 -40.82 -0.25 5.94 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.00 8.12 -51.93 -0.42 0.57 16 35 H 0.36 5.42 6.23 -39.29 -0.24 5.17 16 36 H 0.33 3.64 9.00 -39.29 -0.35 3.29 16 37 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 38 H 0.08 1.23 7.33 -51.93 -0.38 0.85 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.71 7.91 -51.93 -0.41 0.30 16 44 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -26.92 333.62 -8.05 -34.97 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -7.56 Total: 12.01 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -0.80 Total: -11.33 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.23 Total: -46.05 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.92 -8.05 -34.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316124285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.842 kcal (2) G-P(sol) polarization free energy of solvation -26.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds