Wall clock time and date at job start Mon Mar 30 2020 05:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00361 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47491 * 119.99896 * 8 6 4 11 11 H 1.48511 * 109.47242 * 239.99873 * 8 6 4 12 12 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 13 13 N 1.46499 * 109.47555 * 300.00682 * 12 2 1 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 N 1.46902 * 110.01590 * 58.60368 * 17 16 14 19 19 C 1.54268 * 110.02867 * 297.16687 * 17 16 14 20 20 C 1.54899 * 104.19366 * 217.10432 * 19 17 16 21 21 C 1.54892 * 102.74568 * 37.94090 * 20 19 17 22 22 C 1.53872 * 110.03635 * 179.97438 * 17 16 14 23 23 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 24 24 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 25 25 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 28 28 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 29 29 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47382 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.47216 * 60.00680 * 12 2 1 32 32 H 0.97000 * 119.99484 * 359.97438 * 13 12 2 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.00901 * 111.00470 * 300.70216 * 18 17 16 36 36 H 1.00900 * 110.99819 * 64.66166 * 18 17 16 37 37 H 1.08996 * 110.48926 * 335.77956 * 19 17 16 38 38 H 1.09005 * 110.48923 * 98.43089 * 19 17 16 39 39 H 1.09004 * 110.75265 * 279.62715 * 20 19 17 40 40 H 1.09002 * 110.91285 * 156.32985 * 20 19 17 41 41 H 1.09001 * 110.48273 * 203.37633 * 21 20 19 42 42 H 1.08998 * 110.48153 * 80.74020 * 21 20 19 43 43 H 1.09001 * 110.03440 * 238.57193 * 22 17 16 44 44 H 1.09006 * 110.02647 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3214 -1.1201 -4.0079 9 1 3.1466 -2.2868 -3.6038 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5751 -1.4769 3.7807 16 6 1.3702 0.2159 4.9000 17 6 1.8762 -0.5082 6.1492 18 7 3.3448 -0.5431 6.1499 19 6 1.3125 -1.9436 6.1927 20 6 1.0352 -2.1974 7.6953 21 6 0.5087 -0.8245 8.1823 22 6 1.3657 0.2036 7.4143 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9565 -0.8899 28 1 1.6765 1.9563 0.8901 29 1 0.7081 1.1609 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6768 -1.7489 1.2493 32 1 0.9942 0.7581 2.3564 33 1 1.7326 1.2439 4.9041 34 1 0.2803 0.2149 4.8959 35 1 3.6958 -1.0170 5.3312 36 1 3.7285 0.3874 6.2215 37 1 0.3886 -2.0082 5.6181 38 1 2.0481 -2.6539 5.8152 39 1 1.9535 -2.4663 8.2175 40 1 0.2777 -2.9701 7.8261 41 1 0.6577 -0.7182 9.2569 42 1 -0.5450 -0.7084 7.9290 43 1 2.2076 0.5221 8.0290 44 1 0.7577 1.0652 7.1382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316124285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:58 Heat of formation + Delta-G solvation = -79.569053 kcal Electronic energy + Delta-G solvation = -21442.482545 eV Core-core repulsion = 18392.735676 eV Total energy + Delta-G solvation = -3049.746869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26218 -39.27138 -37.93963 -35.00581 -33.78323 -32.81386 -30.32734 -29.57146 -27.58901 -27.53011 -27.02253 -25.55815 -21.76033 -21.53075 -20.65105 -19.93321 -18.38685 -17.69530 -16.91880 -16.74413 -16.46730 -16.09913 -16.00646 -15.61877 -14.90596 -14.81591 -14.54941 -14.37733 -13.99475 -13.85954 -13.36760 -13.11562 -13.07546 -12.68595 -12.59424 -12.36493 -12.26949 -12.15776 -11.99395 -11.89604 -11.78824 -11.62829 -11.50331 -11.33413 -11.26154 -10.76843 -10.61439 -10.42049 -9.92931 -9.49603 -8.04641 -6.20340 1.39445 1.43900 1.53047 1.70557 2.33370 2.49860 3.19030 3.60394 3.66608 3.74615 4.00624 4.16258 4.34366 4.37469 4.44084 4.50446 4.63100 4.67801 4.70259 4.75027 4.91350 4.97790 5.01692 5.03280 5.08860 5.13490 5.16708 5.17561 5.22342 5.30592 5.35968 5.42456 5.57270 5.59960 5.64883 5.65294 6.13021 6.19775 6.41271 6.44380 6.69012 6.70584 6.84338 7.37026 7.47666 8.94288 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042339 B = 0.003727 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.169547 B = 7511.449516 C = 7647.267763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.150 3.850 13 N -0.712 5.712 14 C 0.500 3.500 15 O -0.579 6.579 16 C -0.165 4.165 17 C 0.133 3.867 18 N -0.845 5.845 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.110 4.110 23 H 0.037 0.963 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.260 0.740 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.407 0.593 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.346 0.654 36 H 0.337 0.663 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 2.639 18.141 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.049 3.951 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.026 3.974 13 N -0.363 5.363 14 C 0.288 3.712 15 O -0.459 6.459 16 C -0.206 4.206 17 C 0.039 3.961 18 N -0.380 5.380 19 C -0.145 4.145 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.148 4.148 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.244 0.756 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.400 1.624 18.705 18.928 hybrid contribution 0.196 0.219 -2.416 2.434 sum -2.204 1.843 16.289 16.541 Atomic orbital electron populations 1.21659 0.97133 0.98558 1.00392 1.18361 0.93231 0.93049 0.90414 1.21655 0.97828 0.97827 1.00388 1.21308 1.31649 1.12114 0.91681 0.93914 1.25447 0.95145 0.95599 1.00964 1.69912 1.36969 1.23305 1.23548 0.85719 0.78149 0.78737 0.80274 1.20085 1.20684 1.20675 1.21201 0.96828 0.94920 0.84497 1.46215 1.52770 1.31853 1.05479 1.21380 0.79919 0.84364 0.85501 1.90568 1.40210 1.28129 1.87030 1.22740 1.04380 1.01369 0.92160 1.21245 0.88005 0.94581 0.92257 1.59133 1.06067 1.23377 1.49373 1.22320 0.99233 0.95954 0.97009 1.22443 1.00574 0.97936 0.94740 1.22323 0.99437 0.93721 1.00026 1.22258 0.99868 0.98201 0.94483 0.94372 0.91962 0.96471 0.96412 0.91976 0.94378 0.93026 0.94531 0.94700 0.75578 0.87035 0.86751 0.83619 0.84974 0.92603 0.93442 0.92148 0.91426 0.90675 0.90823 0.90725 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 2 C 0.05 2.28 0.50 -52.93 -0.03 2.26 16 3 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 4 C -0.53 -27.93 8.01 25.60 0.21 -27.72 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 6 C 0.03 1.48 5.15 84.66 0.44 1.92 16 7 N -0.90 -47.61 9.35 21.45 0.20 -47.41 16 8 Si 0.94 42.54 29.54 68.60 2.03 44.57 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 C 0.15 6.24 4.50 86.38 0.39 6.63 16 13 N -0.71 -23.15 4.96 -463.06 -2.30 -25.45 16 14 C 0.50 15.34 7.37 87.66 0.65 15.99 16 15 O -0.58 -21.80 12.37 -3.04 -0.04 -21.83 16 16 C -0.16 -3.43 4.58 29.85 0.14 -3.30 16 17 C 0.13 2.87 0.81 4.25 0.00 2.87 16 18 N -0.84 -20.57 8.71 -148.72 -1.30 -21.86 16 19 C -0.11 -2.67 4.89 31.67 0.15 -2.52 16 20 C -0.12 -2.37 6.91 31.89 0.22 -2.15 16 21 C -0.12 -1.80 6.83 31.69 0.22 -1.59 16 22 C -0.11 -1.77 6.21 31.33 0.19 -1.57 16 23 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 24 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 28 H 0.04 1.37 6.86 -2.38 -0.02 1.35 16 29 H 0.26 13.25 8.31 -92.70 -0.77 12.48 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.41 11.51 6.16 -92.71 -0.57 10.94 16 33 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.11 1.97 8.12 -2.39 -0.02 1.95 16 35 H 0.35 10.40 6.23 -89.69 -0.56 9.84 16 36 H 0.34 6.89 9.00 -89.69 -0.81 6.09 16 37 H 0.06 1.40 7.84 -2.39 -0.02 1.39 16 38 H 0.05 1.49 7.33 -2.38 -0.02 1.47 16 39 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.21 7.91 -2.39 -0.02 1.19 16 44 H 0.08 1.03 7.67 -2.38 -0.02 1.01 16 Total: -1.00 -58.82 333.62 1.40 -57.42 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: -0.94 Total: 33.02 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 3.74 Total: -18.45 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -3.39 Total: -94.73 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.04 Total: -21.83 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -58.82 1.40 -57.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316124285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.145 kcal (2) G-P(sol) polarization free energy of solvation -58.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds