Wall clock time and date at job start Mon Mar 30 2020 05:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47601 * 2 1 4 4 C 1.50699 * 109.47118 * 239.99603 * 2 1 3 5 5 H 1.08003 * 119.99860 * 241.34908 * 4 2 1 6 6 C 1.37872 * 119.99986 * 61.35273 * 4 2 1 7 7 N 1.31520 * 120.00004 * 193.97484 * 6 4 2 8 8 Si 1.86795 * 119.99988 * 13.97237 * 6 4 2 9 9 H 1.48496 * 109.47298 * 84.55274 * 8 6 4 10 10 H 1.48505 * 109.47035 * 204.55142 * 8 6 4 11 11 H 1.48503 * 109.47134 * 324.55107 * 8 6 4 12 12 C 1.53008 * 109.47141 * 119.99615 * 2 1 3 13 13 N 1.46497 * 109.46852 * 300.00366 * 12 2 1 14 14 C 1.34780 * 119.99528 * 179.97438 * 13 12 2 15 15 O 1.21287 * 120.00344 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00045 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.47609 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.49654 * 54.91668 * 17 16 14 19 19 C 1.53121 * 109.50411 * 174.99599 * 17 16 14 20 20 C 1.53122 * 109.15563 * 177.59427 * 19 17 16 21 21 C 1.53029 * 109.27984 * 302.34615 * 20 19 17 22 22 N 1.46850 * 109.52608 * 59.18014 * 21 20 19 23 23 C 1.46844 * 111.19563 * 298.25998 * 22 21 20 24 24 H 1.09002 * 109.47053 * 309.36799 * 1 2 3 25 25 H 1.08994 * 109.46676 * 69.36975 * 1 2 3 26 26 H 1.09003 * 109.46991 * 189.36918 * 1 2 3 27 27 H 1.08997 * 109.47412 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46842 * 300.00272 * 3 2 1 29 29 H 1.09000 * 109.47290 * 59.99329 * 3 2 1 30 30 H 0.96996 * 119.99991 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47148 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.46527 * 59.99701 * 12 2 1 33 33 H 0.96990 * 120.00300 * 359.97438 * 13 12 2 34 34 H 1.09003 * 109.47115 * 299.99737 * 16 14 13 35 35 H 1.09006 * 109.47619 * 59.99516 * 16 14 13 36 36 H 1.08999 * 109.52272 * 297.50283 * 19 17 16 37 37 H 1.09005 * 109.51865 * 57.62898 * 19 17 16 38 38 H 1.08999 * 109.50190 * 62.29298 * 20 19 17 39 39 H 1.09004 * 109.49543 * 182.36605 * 20 19 17 40 40 H 1.08996 * 109.46331 * 179.19961 * 21 20 19 41 41 H 1.09000 * 109.46377 * 299.16505 * 21 20 19 42 42 H 1.00900 * 111.00089 * 174.15393 * 22 21 20 43 43 H 1.08998 * 109.46192 * 301.71593 * 23 22 21 44 44 H 1.09001 * 109.45926 * 181.75545 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6351 -1.6011 -1.1314 6 6 1.7224 -0.2235 -2.4825 7 7 1.9159 -0.9727 -3.5459 8 14 1.0277 1.5005 -2.6684 9 1 2.1418 2.4815 -2.7084 10 1 0.2471 1.5863 -3.9288 11 1 0.1418 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6696 15 8 2.5734 -1.4779 3.7809 16 6 1.3749 0.2195 4.9000 17 6 1.8837 -0.5025 6.1493 18 1 2.9699 -0.5834 6.1057 19 6 1.4796 0.2880 7.3969 20 6 1.9400 -0.4716 8.6441 21 6 1.3232 -1.8720 8.6392 22 7 1.7402 -2.5878 7.4266 23 6 1.2685 -1.9021 6.2168 24 1 -0.3633 0.6519 0.7945 25 1 -0.3632 0.3621 -0.9617 26 1 -0.3633 -1.0140 0.1673 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6975 -0.6303 -4.4267 31 1 3.1300 -0.7216 1.2491 32 1 1.6766 -1.7489 1.2493 33 1 0.9942 0.7582 2.3564 34 1 1.7390 1.2469 4.9001 35 1 0.2848 0.2204 4.9000 36 1 1.9509 1.2706 7.3740 37 1 0.3960 0.4042 7.4192 38 1 3.0270 -0.5526 8.6402 39 1 1.6183 0.0654 9.5365 40 1 1.6604 -2.4205 9.5187 41 1 0.2364 -1.7903 8.6570 42 1 1.4245 -3.5459 7.4457 43 1 0.1820 -1.8203 6.2459 44 1 1.5661 -2.4724 5.3368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316146618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:55 Heat of formation + Delta-G solvation = -66.359725 kcal Electronic energy + Delta-G solvation = -21210.211933 eV Core-core repulsion = 18161.037864 eV Total energy + Delta-G solvation = -3049.174070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04715 -39.38022 -38.24750 -34.95189 -34.17142 -33.37325 -32.38355 -28.94767 -28.00677 -27.22478 -26.47333 -24.62712 -23.15293 -21.26414 -20.90885 -20.49008 -18.29207 -17.88480 -17.43265 -16.93553 -16.64951 -16.45761 -15.62088 -15.35223 -15.16889 -14.87812 -14.73851 -14.49688 -14.33341 -14.02682 -13.84221 -13.74604 -13.36863 -13.33639 -12.94722 -12.55002 -12.38763 -12.12701 -11.95052 -11.94683 -11.76033 -11.59754 -11.48479 -11.21849 -11.07474 -10.62993 -10.58118 -10.36675 -9.91862 -9.34784 -8.30754 -6.32809 1.36436 1.37966 1.51265 1.78521 2.34699 2.39153 3.05509 3.29893 3.80362 3.88657 3.98735 4.07914 4.16799 4.26897 4.33444 4.41024 4.43213 4.48649 4.67128 4.71579 4.77265 4.80380 4.84457 4.85842 4.87417 4.94174 4.99605 5.06628 5.07738 5.13649 5.20221 5.24941 5.39878 5.47300 5.54243 5.59438 5.73781 5.80631 6.15993 6.30206 6.49378 6.70218 6.75803 7.32190 7.43048 8.86762 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046516 B = 0.003640 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.794769 B = 7689.877303 C = 7981.002008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.027 3.973 3 C -0.147 4.147 4 C -0.521 4.521 5 H 0.024 0.976 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.316 1.316 11 H -0.201 1.201 12 C 0.158 3.842 13 N -0.714 5.714 14 C 0.499 3.501 15 O -0.586 6.586 16 C -0.127 4.127 17 C -0.067 4.067 18 H 0.056 0.944 19 C -0.112 4.112 20 C -0.119 4.119 21 C 0.054 3.946 22 N -0.705 5.705 23 C 0.060 3.940 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.264 0.736 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.412 0.588 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.345 0.655 43 H 0.031 0.969 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 7.883 24.246 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.026 3.974 3 C -0.203 4.203 4 C -0.559 4.559 5 H 0.042 0.958 6 C -0.183 4.183 7 N -0.588 5.588 8 Si 0.776 3.224 9 H -0.209 1.209 10 H -0.245 1.245 11 H -0.124 1.124 12 C 0.034 3.966 13 N -0.366 5.366 14 C 0.287 3.713 15 O -0.467 6.467 16 C -0.167 4.167 17 C -0.086 4.086 18 H 0.075 0.925 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.075 4.075 22 N -0.337 5.337 23 C -0.069 4.069 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.249 0.751 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.163 0.837 43 H 0.049 0.951 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.567 7.448 24.138 25.867 hybrid contribution -0.796 -0.080 -1.261 1.493 sum -6.362 7.368 22.877 24.862 Atomic orbital electron populations 1.22206 0.95940 1.00578 1.00972 1.18652 0.93855 0.93143 0.91723 1.22287 1.00880 0.96735 1.00422 1.21079 1.32951 1.11068 0.90819 0.95768 1.25909 0.95384 1.01825 0.95140 1.70124 1.50764 1.38417 0.99450 0.86299 0.79432 0.79611 0.77050 1.20901 1.24514 1.12432 1.20955 0.97056 0.94863 0.83761 1.46111 1.53255 1.32125 1.05133 1.21501 0.79664 0.84400 0.85696 1.90673 1.40085 1.28571 1.87341 1.21786 1.03853 1.01206 0.89826 1.20874 1.00138 0.93888 0.93719 0.92542 1.21639 1.01709 0.98728 0.92851 1.21603 1.00732 0.94862 0.98438 1.22020 0.97477 0.95625 0.92369 1.60210 1.65092 1.06053 1.02318 1.22025 0.96190 0.95861 0.92815 0.91218 0.93675 0.94278 0.93698 0.94686 0.90424 0.92667 0.94450 0.94614 0.75051 0.85925 0.86503 0.90260 0.90793 0.92527 0.89536 0.90156 0.94754 0.83653 0.95057 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 7.53 71.98 0.54 -4.64 16 2 C 0.03 1.15 0.50 -52.93 -0.03 1.13 16 3 C -0.15 -5.37 7.52 71.98 0.54 -4.83 16 4 C -0.52 -29.03 8.62 25.60 0.22 -28.81 16 5 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 6 C 0.01 0.83 5.32 84.65 0.45 1.28 16 7 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 8 Si 0.95 42.52 22.79 68.60 1.56 44.08 16 9 H -0.28 -12.40 7.10 99.48 0.71 -11.69 16 10 H -0.32 -14.64 7.11 99.48 0.71 -13.93 16 11 H -0.20 -7.48 4.65 99.48 0.46 -7.02 16 12 C 0.16 6.31 4.49 86.38 0.39 6.70 16 13 N -0.71 -20.87 5.00 -463.04 -2.32 -23.19 16 14 C 0.50 14.62 7.55 87.66 0.66 15.28 16 15 O -0.59 -22.95 13.98 -3.05 -0.04 -22.99 16 16 C -0.13 -2.31 5.18 29.85 0.15 -2.16 16 17 C -0.07 -1.39 2.00 -10.74 -0.02 -1.41 16 18 H 0.06 1.53 7.95 -2.39 -0.02 1.51 16 19 C -0.11 -1.59 5.29 30.68 0.16 -1.43 16 20 C -0.12 -1.73 6.09 30.64 0.19 -1.54 16 21 C 0.05 0.86 6.55 86.32 0.57 1.42 16 22 N -0.71 -15.15 6.85 -514.04 -3.52 -18.67 16 23 C 0.06 1.42 5.57 86.32 0.48 1.90 16 24 H 0.07 1.93 7.13 -2.39 -0.02 1.91 16 25 H 0.04 1.78 4.30 -2.39 -0.01 1.77 16 26 H 0.04 1.49 8.12 -2.39 -0.02 1.47 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.03 1.34 2.25 -2.39 -0.01 1.33 16 29 H 0.08 2.11 6.86 -2.39 -0.02 2.09 16 30 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.41 9.17 6.26 -92.72 -0.58 8.59 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.35 6.62 8.90 -89.69 -0.80 5.82 16 43 H 0.03 0.65 8.14 -2.39 -0.02 0.64 16 44 H 0.06 1.89 5.99 -2.39 -0.01 1.87 16 Total: -1.00 -72.74 325.40 -0.34 -73.08 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.63 Total: 23.81 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 4.31 Total: -17.10 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -5.54 Total: -100.88 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.04 Total: -22.99 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.56 Total: 44.08 kcal Total: -72.74 -0.34 -73.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316146618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.721 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds