Wall clock time and date at job start Mon Mar 30 2020 05:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47104 * 2 1 4 4 C 1.50706 * 109.46692 * 240.00192 * 2 1 3 5 5 H 1.08002 * 119.99765 * 239.99461 * 4 2 1 6 6 C 1.37871 * 119.99828 * 59.99987 * 4 2 1 7 7 N 1.31513 * 120.00524 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99547 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46888 * 90.00131 * 8 6 4 10 10 H 1.48496 * 109.46880 * 209.99889 * 8 6 4 11 11 H 1.48493 * 109.47252 * 329.99859 * 8 6 4 12 12 C 1.52997 * 109.47058 * 120.00496 * 2 1 3 13 13 N 1.46505 * 109.47091 * 299.99476 * 12 2 1 14 14 C 1.34774 * 119.99896 * 180.02562 * 13 12 2 15 15 O 1.21279 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99555 * 180.02562 * 14 13 12 17 17 C 1.53008 * 109.46830 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.53252 * 305.09854 * 17 16 14 19 19 C 1.53120 * 109.50107 * 184.99851 * 17 16 14 20 20 C 1.53123 * 109.21163 * 182.43700 * 19 17 16 21 21 C 1.53039 * 109.27546 * 57.62218 * 20 19 17 22 22 N 1.46842 * 109.52666 * 300.81951 * 21 20 19 23 23 C 1.46848 * 111.19688 * 61.74516 * 22 21 20 24 24 H 1.08996 * 109.47032 * 299.99636 * 1 2 3 25 25 H 1.08997 * 109.47315 * 60.00233 * 1 2 3 26 26 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47329 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47250 * 300.00271 * 3 2 1 29 29 H 1.09001 * 109.47283 * 60.00058 * 3 2 1 30 30 H 0.96996 * 119.99882 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46868 * 180.02562 * 12 2 1 32 32 H 1.09001 * 109.47609 * 59.99836 * 12 2 1 33 33 H 0.97001 * 119.99463 * 0.02562 * 13 12 2 34 34 H 1.09000 * 109.47123 * 59.99973 * 16 14 13 35 35 H 1.09001 * 109.47113 * 299.99798 * 16 14 13 36 36 H 1.09002 * 109.52427 * 62.49974 * 19 17 16 37 37 H 1.08995 * 109.52208 * 302.37293 * 19 17 16 38 38 H 1.08999 * 109.50194 * 177.56161 * 20 19 17 39 39 H 1.09002 * 109.50248 * 297.64565 * 20 19 17 40 40 H 1.08997 * 109.46051 * 60.83848 * 21 20 19 41 41 H 1.09006 * 109.46001 * 180.81597 * 21 20 19 42 42 H 1.00901 * 111.00146 * 297.65239 * 22 21 20 43 43 H 1.08999 * 109.46555 * 58.27446 * 23 22 21 44 44 H 1.08998 * 109.46337 * 178.25654 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4870 -0.1402 -5.1121 11 1 3.6306 -1.7565 -3.7121 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4910 3.6695 15 8 2.5749 -1.4771 3.7807 16 6 1.3750 0.2191 4.8999 17 6 1.8851 -0.5022 6.1492 18 1 1.5991 -1.5531 6.1055 19 6 1.2746 0.1424 7.3967 20 6 1.8361 -0.5444 8.6448 21 6 3.3623 -0.4309 8.6404 22 7 3.8980 -1.0640 7.4287 23 6 3.4100 -0.3913 6.2180 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7088 1.1614 -3.4844 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7490 1.2492 33 1 0.9938 0.7578 2.3564 34 1 0.2850 0.2184 4.9000 35 1 1.7377 1.2470 4.8999 36 1 0.1910 0.0265 7.3735 37 1 1.5271 1.2025 7.4196 38 1 1.4378 -0.0606 9.5366 39 1 1.5488 -1.5958 8.6419 40 1 3.6483 0.6207 8.6576 41 1 3.7662 -0.9316 9.5205 42 1 3.6792 -2.0488 7.4082 43 1 3.6958 0.6602 6.2465 44 1 3.8483 -0.8631 5.3386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316146619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:58 Heat of formation + Delta-G solvation = -65.250335 kcal Electronic energy + Delta-G solvation = -21142.685286 eV Core-core repulsion = 18093.559323 eV Total energy + Delta-G solvation = -3049.125963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.86235 -38.39382 -36.34925 -33.28229 -33.09095 -31.48063 -30.86754 -27.62610 -25.74142 -25.49883 -24.61804 -23.66840 -22.16575 -20.39036 -19.82866 -18.76669 -16.83204 -16.05552 -15.78730 -15.59735 -15.13899 -14.81860 -14.63816 -14.41917 -13.80266 -13.57465 -13.03424 -12.91626 -12.50675 -12.41335 -12.22164 -12.12195 -11.76473 -11.41754 -11.33533 -11.20244 -11.11785 -10.87347 -10.76565 -10.69689 -10.58428 -10.38566 -10.20865 -9.64510 -9.49049 -9.17577 -8.79359 -8.45137 -8.39232 -8.30132 -6.03118 -4.13250 3.07032 3.27724 3.34753 3.38701 3.74477 4.25539 4.39500 4.58271 4.69346 4.79497 4.90343 5.11353 5.20330 5.23698 5.37190 5.44719 5.50405 5.55462 5.63496 5.72458 5.79375 5.92408 5.94657 6.19703 6.24473 6.32075 6.34096 6.49958 6.78150 6.80911 6.92344 6.98057 7.00661 7.05558 7.32655 7.34564 7.54371 7.68476 7.99780 8.06337 8.15472 8.37741 8.72623 8.87828 9.52762 10.98291 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046135 B = 0.003448 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.774547 B = 8118.395812 C = 8398.111722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.718 5.718 14 C 0.502 3.498 15 O -0.551 6.551 16 C -0.136 4.136 17 C -0.106 4.106 18 H 0.077 0.923 19 C -0.116 4.116 20 C -0.157 4.157 21 C 0.054 3.946 22 N -0.685 5.685 23 C 0.056 3.944 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.260 0.740 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.341 0.659 43 H 0.064 0.936 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 1.572 18.075 18.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.368 5.368 14 C 0.288 3.712 15 O -0.430 6.430 16 C -0.176 4.176 17 C -0.126 4.126 18 H 0.095 0.905 19 C -0.154 4.154 20 C -0.196 4.196 21 C -0.076 4.076 22 N -0.313 5.313 23 C -0.073 4.073 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.158 0.842 43 H 0.083 0.917 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.042 1.337 17.998 18.048 hybrid contribution -1.094 -0.305 -0.976 1.497 sum -1.052 1.032 17.022 17.086 Atomic orbital electron populations 1.21829 0.97816 0.99124 1.00054 1.18351 0.92747 0.92766 0.90639 1.21824 0.98585 0.98350 1.00056 1.21000 1.31468 1.12092 0.89934 0.92447 1.24879 0.94869 0.94902 0.98860 1.69801 1.36759 1.22725 1.23224 0.86572 0.79352 0.79387 0.82581 1.20718 1.21258 1.19874 1.21697 0.98103 0.95729 0.83555 1.46356 1.52541 1.31754 1.06169 1.20570 0.80779 0.84896 0.84930 1.90628 1.38669 1.26826 1.86902 1.21682 1.02239 1.00671 0.93050 1.21612 0.97986 1.00355 0.92687 0.90492 1.21640 0.99920 0.99804 0.94013 1.22259 0.98152 1.01020 0.98205 1.22041 0.91874 1.00338 0.93304 1.60671 1.61450 1.07303 1.01855 1.22278 0.91795 0.99630 0.93624 0.97532 0.89606 0.95502 0.95446 0.89618 0.97512 0.93009 0.92771 0.92850 0.76787 0.89293 0.89197 0.91988 0.91826 0.91648 0.92043 0.91138 0.91092 0.84153 0.91738 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.92 8.08 37.15 0.30 -2.62 16 4 C -0.51 -13.27 8.01 -34.44 -0.28 -13.54 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.58 9.35 55.43 0.52 -23.06 16 8 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.13 2.78 4.50 -4.04 -0.02 2.76 16 13 N -0.72 -12.40 4.96 -60.29 -0.30 -12.70 16 14 C 0.50 8.20 7.55 -10.99 -0.08 8.11 16 15 O -0.55 -10.80 13.98 5.56 0.08 -10.72 16 16 C -0.14 -1.58 5.18 -27.88 -0.14 -1.73 16 17 C -0.11 -1.20 1.98 -90.53 -0.18 -1.38 16 18 H 0.08 1.00 7.95 -51.93 -0.41 0.58 16 19 C -0.12 -1.05 5.28 -26.61 -0.14 -1.19 16 20 C -0.16 -1.30 6.08 -26.65 -0.16 -1.47 16 21 C 0.05 0.49 6.55 -3.84 -0.03 0.47 16 22 N -0.69 -7.74 6.87 -113.81 -0.78 -8.52 16 23 C 0.06 0.70 5.57 -3.83 -0.02 0.68 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 25 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.40 6.19 6.16 -40.82 -0.25 5.94 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.34 3.71 8.86 -39.29 -0.35 3.36 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.52 5.99 -51.93 -0.31 1.21 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -27.79 335.27 -8.78 -36.57 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.70 Total: 7.36 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -0.62 Total: -9.68 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.56 Total: -44.28 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.79 -8.78 -36.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316146619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.681 kcal (2) G-P(sol) polarization free energy of solvation -27.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds