Wall clock time and date at job start Mon Mar 30 2020 05:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47104 * 2 1 4 4 C 1.50706 * 109.46692 * 240.00192 * 2 1 3 5 5 H 1.08002 * 119.99765 * 239.99461 * 4 2 1 6 6 C 1.37871 * 119.99828 * 59.99987 * 4 2 1 7 7 N 1.31513 * 120.00524 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99547 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46888 * 90.00131 * 8 6 4 10 10 H 1.48496 * 109.46880 * 209.99889 * 8 6 4 11 11 H 1.48493 * 109.47252 * 329.99859 * 8 6 4 12 12 C 1.52997 * 109.47058 * 120.00496 * 2 1 3 13 13 N 1.46505 * 109.47091 * 299.99476 * 12 2 1 14 14 C 1.34774 * 119.99896 * 180.02562 * 13 12 2 15 15 O 1.21279 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99555 * 180.02562 * 14 13 12 17 17 C 1.53008 * 109.46830 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.53252 * 305.09854 * 17 16 14 19 19 C 1.53120 * 109.50107 * 184.99851 * 17 16 14 20 20 C 1.53123 * 109.21163 * 182.43700 * 19 17 16 21 21 C 1.53039 * 109.27546 * 57.62218 * 20 19 17 22 22 N 1.46842 * 109.52666 * 300.81951 * 21 20 19 23 23 C 1.46848 * 111.19688 * 61.74516 * 22 21 20 24 24 H 1.08996 * 109.47032 * 299.99636 * 1 2 3 25 25 H 1.08997 * 109.47315 * 60.00233 * 1 2 3 26 26 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47329 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47250 * 300.00271 * 3 2 1 29 29 H 1.09001 * 109.47283 * 60.00058 * 3 2 1 30 30 H 0.96996 * 119.99882 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46868 * 180.02562 * 12 2 1 32 32 H 1.09001 * 109.47609 * 59.99836 * 12 2 1 33 33 H 0.97001 * 119.99463 * 0.02562 * 13 12 2 34 34 H 1.09000 * 109.47123 * 59.99973 * 16 14 13 35 35 H 1.09001 * 109.47113 * 299.99798 * 16 14 13 36 36 H 1.09002 * 109.52427 * 62.49974 * 19 17 16 37 37 H 1.08995 * 109.52208 * 302.37293 * 19 17 16 38 38 H 1.08999 * 109.50194 * 177.56161 * 20 19 17 39 39 H 1.09002 * 109.50248 * 297.64565 * 20 19 17 40 40 H 1.08997 * 109.46051 * 60.83848 * 21 20 19 41 41 H 1.09006 * 109.46001 * 180.81597 * 21 20 19 42 42 H 1.00901 * 111.00146 * 297.65239 * 22 21 20 43 43 H 1.08999 * 109.46555 * 58.27446 * 23 22 21 44 44 H 1.08998 * 109.46337 * 178.25654 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4870 -0.1402 -5.1121 11 1 3.6306 -1.7565 -3.7121 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4910 3.6695 15 8 2.5749 -1.4771 3.7807 16 6 1.3750 0.2191 4.8999 17 6 1.8851 -0.5022 6.1492 18 1 1.5991 -1.5531 6.1055 19 6 1.2746 0.1424 7.3967 20 6 1.8361 -0.5444 8.6448 21 6 3.3623 -0.4309 8.6404 22 7 3.8980 -1.0640 7.4287 23 6 3.4100 -0.3913 6.2180 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7088 1.1614 -3.4844 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7490 1.2492 33 1 0.9938 0.7578 2.3564 34 1 0.2850 0.2184 4.9000 35 1 1.7377 1.2470 4.8999 36 1 0.1910 0.0265 7.3735 37 1 1.5271 1.2025 7.4196 38 1 1.4378 -0.0606 9.5366 39 1 1.5488 -1.5958 8.6419 40 1 3.6483 0.6207 8.6576 41 1 3.7662 -0.9316 9.5205 42 1 3.6792 -2.0488 7.4082 43 1 3.6958 0.6602 6.2465 44 1 3.8483 -0.8631 5.3386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316146619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:58 Heat of formation + Delta-G solvation = -83.278679 kcal Electronic energy + Delta-G solvation = -21143.467053 eV Core-core repulsion = 18093.559323 eV Total energy + Delta-G solvation = -3049.907731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.06370 -39.46577 -38.03470 -34.96099 -34.05434 -32.68953 -32.23936 -28.74778 -27.56475 -27.37108 -26.22019 -24.50506 -23.10059 -21.39955 -20.96848 -20.56000 -18.28267 -17.59857 -16.99688 -16.70219 -16.55285 -16.39245 -15.73213 -15.51331 -14.97675 -14.80442 -14.59063 -14.46657 -14.02176 -13.42475 -13.39149 -13.19263 -13.08703 -13.00256 -12.74770 -12.63327 -12.52562 -12.24987 -12.15053 -12.12629 -11.94524 -11.53821 -11.51266 -11.45709 -11.24268 -10.74201 -10.54903 -10.40314 -9.87193 -9.22445 -8.03278 -6.19112 1.41432 1.44393 1.52643 1.77680 2.36446 2.52375 3.20227 3.41734 3.78062 3.79228 3.96677 4.14986 4.17416 4.36823 4.45629 4.51102 4.51475 4.67075 4.71045 4.73273 4.76489 4.77620 5.00103 5.04942 5.05868 5.08681 5.11728 5.17239 5.18511 5.19716 5.30565 5.39044 5.46136 5.64783 5.66440 5.67114 6.15116 6.15365 6.21882 6.43282 6.46970 6.74686 6.85459 7.41263 7.48817 8.95495 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046135 B = 0.003448 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.774547 B = 8118.395812 C = 8398.111722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.149 3.851 13 N -0.714 5.714 14 C 0.499 3.501 15 O -0.587 6.587 16 C -0.125 4.125 17 C -0.101 4.101 18 H 0.056 0.944 19 C -0.111 4.111 20 C -0.153 4.153 21 C 0.054 3.946 22 N -0.698 5.698 23 C 0.060 3.940 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.408 0.592 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.340 0.660 43 H 0.069 0.931 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 2.729 19.858 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.201 1.201 12 C 0.025 3.975 13 N -0.365 5.365 14 C 0.287 3.713 15 O -0.468 6.468 16 C -0.166 4.166 17 C -0.121 4.121 18 H 0.075 0.925 19 C -0.148 4.148 20 C -0.192 4.192 21 C -0.076 4.076 22 N -0.325 5.325 23 C -0.069 4.069 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.246 0.754 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.157 0.843 43 H 0.087 0.913 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.937 2.515 19.800 19.981 hybrid contribution -0.752 -0.695 -1.490 1.808 sum -1.689 1.820 18.310 18.477 Atomic orbital electron populations 1.21666 0.97093 0.98574 1.00468 1.18349 0.93252 0.93042 0.90315 1.21662 0.97837 0.97829 1.00465 1.21304 1.31739 1.12164 0.91759 0.93923 1.25442 0.95150 0.95576 1.00935 1.69901 1.37026 1.23215 1.23613 0.85777 0.78661 0.78531 0.79957 1.20471 1.20732 1.20144 1.21200 0.96772 0.94941 0.84622 1.46198 1.52892 1.31993 1.05454 1.21456 0.79717 0.84428 0.85677 1.90627 1.40161 1.28661 1.87399 1.21726 1.03636 1.01052 0.90148 1.21544 0.97182 0.99488 0.93922 0.92538 1.21616 1.00398 1.00136 0.92682 1.22223 0.97349 1.00976 0.98693 1.22114 0.92622 1.00353 0.92480 1.60657 1.62100 1.07402 1.02372 1.22109 0.92601 0.99387 0.92845 0.94235 0.91936 0.96480 0.96457 0.91949 0.94220 0.93006 0.94721 0.94741 0.75450 0.86729 0.86760 0.90823 0.90710 0.89762 0.92468 0.90901 0.89987 0.84273 0.91263 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.30 8.08 71.98 0.58 -4.71 16 4 C -0.53 -28.31 8.01 25.60 0.21 -28.11 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.52 5.15 84.65 0.44 1.96 16 7 N -0.90 -47.93 9.35 21.44 0.20 -47.72 16 8 Si 0.94 42.78 29.54 68.60 2.03 44.80 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.15 6.33 4.50 86.38 0.39 6.72 16 13 N -0.71 -23.72 4.96 -463.06 -2.30 -26.01 16 14 C 0.50 15.76 7.55 87.66 0.66 16.42 16 15 O -0.59 -23.35 13.98 -3.03 -0.04 -23.40 16 16 C -0.13 -2.57 5.18 29.85 0.15 -2.42 16 17 C -0.10 -2.09 1.98 -10.73 -0.02 -2.11 16 18 H 0.06 1.42 7.95 -2.39 -0.02 1.40 16 19 C -0.11 -1.63 5.28 30.68 0.16 -1.47 16 20 C -0.15 -2.10 6.08 30.65 0.19 -1.92 16 21 C 0.05 0.86 6.55 86.33 0.57 1.42 16 22 N -0.70 -15.23 6.87 -513.99 -3.53 -18.76 16 23 C 0.06 1.46 5.57 86.33 0.48 1.94 16 24 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 25 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 26 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 29 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 30 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 31 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.41 11.60 6.16 -92.71 -0.57 11.03 16 34 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.34 7.37 8.86 -89.69 -0.79 6.57 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.06 1.96 5.99 -2.39 -0.01 1.95 16 Total: -1.00 -61.04 335.27 0.33 -60.72 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.39 Total: 25.05 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.36 Total: -14.67 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -5.63 Total: -92.50 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.04 Total: -23.40 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -61.04 0.33 -60.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316146619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.563 kcal (2) G-P(sol) polarization free energy of solvation -61.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds