Wall clock time and date at job start Mon Mar 30 2020 04:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46843 * 2 1 4 4 C 1.53001 * 109.46777 * 240.00535 * 2 1 3 5 5 H 1.08996 * 109.47101 * 305.23025 * 4 2 1 6 6 N 1.46903 * 109.46968 * 185.23285 * 4 2 1 7 7 C 1.46896 * 111.00245 * 87.79377 * 6 4 2 8 8 C 1.50705 * 109.47210 * 175.61379 * 7 6 4 9 9 O 1.21276 * 119.99987 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99640 * 180.02562 * 8 7 6 11 11 C 1.46508 * 119.99436 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.46778 * 179.97438 * 11 10 8 13 13 H 1.07997 * 120.00190 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99753 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99995 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99701 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47003 * 60.00521 * 16 14 12 18 18 H 1.48505 * 109.46865 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47322 * 300.00226 * 16 14 12 20 20 C 1.52992 * 109.47483 * 65.23123 * 4 2 1 21 21 C 1.53783 * 113.61669 * 279.13743 * 20 4 2 22 22 C 1.53953 * 87.01997 * 220.04877 * 21 20 4 23 23 C 1.53778 * 87.11461 * 25.35911 * 22 21 20 24 24 H 1.08999 * 109.47211 * 52.43803 * 1 2 3 25 25 H 1.09001 * 109.46917 * 172.44423 * 1 2 3 26 26 H 1.09005 * 109.46981 * 292.43994 * 1 2 3 27 27 H 1.08993 * 109.47482 * 119.99975 * 2 1 3 28 28 H 1.08994 * 109.47118 * 60.00282 * 3 2 1 29 29 H 1.09005 * 109.47208 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47368 * 300.00254 * 3 2 1 31 31 H 1.00901 * 110.99757 * 211.75464 * 6 4 2 32 32 H 1.09001 * 109.47628 * 295.61634 * 7 6 4 33 33 H 1.09000 * 109.46720 * 55.61665 * 7 6 4 34 34 H 0.96991 * 120.00683 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.46898 * 299.99328 * 11 10 8 36 36 H 1.09000 * 109.47268 * 59.99862 * 11 10 8 37 37 H 0.96995 * 119.99755 * 179.97438 * 15 14 12 38 38 H 1.09000 * 112.84990 * 50.33482 * 20 4 2 39 39 H 1.09003 * 113.60861 * 334.56783 * 21 20 4 40 40 H 1.08992 * 113.61502 * 105.46631 * 21 20 4 41 41 H 1.09001 * 113.53384 * 270.80886 * 22 21 20 42 42 H 1.09007 * 113.74280 * 139.94483 * 22 21 20 43 43 H 1.09005 * 113.61558 * 220.09093 * 23 22 21 44 44 H 1.09000 * 113.61136 * 89.18762 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6021 -1.7181 -1.2975 6 7 3.5035 -0.8315 -1.1879 7 6 3.9101 -2.0488 -0.4732 8 6 5.4103 -2.1835 -0.5236 9 8 6.0752 -1.3480 -1.0987 10 7 6.0129 -3.2330 0.0695 11 6 7.4713 -3.3636 0.0209 12 6 7.8884 -4.6125 0.7540 13 1 7.1419 -5.2458 1.2100 14 6 9.2231 -4.9472 0.8416 15 7 10.1322 -4.1763 0.2859 16 14 9.7401 -6.4956 1.7497 17 1 9.1151 -7.6789 1.1060 18 1 11.2184 -6.6280 1.7006 19 1 9.2979 -6.4106 3.1648 20 6 1.6402 0.0720 -2.4950 21 6 0.1884 -0.1709 -2.9405 22 6 0.7152 -0.1591 -4.3871 23 6 2.0751 -0.5903 -3.8130 24 1 -0.3633 0.6265 -0.8146 25 1 -0.3633 -1.0188 -0.1351 26 1 -0.3633 0.3923 0.9499 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 3.9074 -0.8028 -2.1121 32 1 3.5857 -1.9859 0.5655 33 1 3.4513 -2.9176 -0.9453 34 1 5.4812 -3.9014 0.5291 35 1 7.7961 -3.4260 -1.0177 36 1 7.9299 -2.4950 0.4936 37 1 11.0711 -4.4115 0.3478 38 1 1.9056 1.1271 -2.4282 39 1 -0.2082 -1.1369 -2.6281 40 1 -0.4826 0.6571 -2.7124 41 1 0.7264 0.8331 -4.8381 42 1 0.2538 -0.9103 -5.0282 43 1 2.9249 -0.1002 -4.2884 44 1 2.1951 -1.6711 -3.7397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324746112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:02 Heat of formation + Delta-G solvation = -37.260859 kcal Electronic energy + Delta-G solvation = -20808.945175 eV Core-core repulsion = 17761.032927 eV Total energy + Delta-G solvation = -3047.912248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.02697 -38.64840 -36.09628 -34.21018 -33.50681 -32.29470 -28.74217 -27.28879 -27.07276 -25.66445 -24.82435 -23.44726 -22.25004 -19.91089 -19.54617 -19.10304 -17.30635 -16.19152 -16.00157 -15.51837 -15.19967 -14.98270 -14.63670 -14.22211 -14.09864 -13.82537 -13.24953 -12.95771 -12.67201 -12.60472 -12.45889 -12.10267 -12.02785 -11.90112 -11.76912 -11.46994 -11.31741 -10.99569 -10.88779 -10.86586 -10.80362 -10.42969 -10.42280 -10.30982 -9.96722 -9.40108 -8.98574 -8.71974 -8.27650 -7.84460 -6.15556 -4.22597 3.25677 3.30395 3.31915 3.41784 3.81828 4.28537 4.41342 4.43551 4.47663 4.67750 4.69298 4.98084 5.07357 5.15566 5.20275 5.31630 5.33588 5.44653 5.52104 5.53827 5.55757 5.62499 5.64978 5.66561 5.72106 5.77985 5.86039 5.89581 5.98419 6.05766 6.17429 6.34075 6.35524 6.48855 7.05100 7.33965 7.46251 7.52406 7.54237 7.68818 7.98656 8.65615 8.80021 9.14075 9.44118 10.94647 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031594 B = 0.003285 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.036335 B = 8521.474614 C = 8817.378765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 C -0.141 4.141 4 C 0.101 3.899 5 H 0.043 0.957 6 N -0.665 5.665 7 C 0.040 3.960 8 C 0.496 3.504 9 O -0.545 6.545 10 N -0.715 5.715 11 C 0.251 3.749 12 C -0.544 4.544 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.111 4.111 21 C -0.131 4.131 22 C -0.143 4.143 23 C -0.144 4.144 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.352 0.648 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.389 0.611 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.266 0.734 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.657 6.852 -4.185 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 C -0.198 4.198 4 C -0.008 4.008 5 H 0.061 0.939 6 N -0.299 5.299 7 C -0.092 4.092 8 C 0.280 3.720 9 O -0.423 6.423 10 N -0.364 5.364 11 C 0.130 3.870 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.130 4.130 21 C -0.169 4.169 22 C -0.180 4.180 23 C -0.182 4.182 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.173 0.827 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.222 0.778 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.853 7.864 -4.084 22.658 hybrid contribution -0.040 -1.939 0.139 1.944 sum -20.893 5.926 -3.944 22.073 Atomic orbital electron populations 1.21989 0.95708 1.01460 1.01682 1.21039 0.94418 0.97196 0.97580 1.21792 1.02684 0.94964 1.00345 1.21613 0.87707 0.97075 0.94433 0.93889 1.60126 1.07588 1.37485 1.24668 1.21903 0.94144 0.92130 1.01044 1.20389 0.89391 0.82250 0.79961 1.90658 1.66138 1.41400 1.44096 1.46448 1.10997 1.24464 1.54481 1.19080 0.73317 0.97041 0.97544 1.21199 0.92685 1.08239 1.36116 0.91979 1.24956 0.96307 0.97284 0.95474 1.69965 1.01377 1.37605 1.43346 0.86475 0.77540 0.82775 0.80109 1.20087 1.21062 1.20055 1.22822 0.96261 1.00943 0.92965 1.23028 0.96081 1.01841 0.95902 1.22837 0.97082 1.01531 0.96564 1.22957 0.97651 1.00720 0.96875 0.92092 0.93146 0.93060 0.91452 0.93821 0.91091 0.93103 0.82671 0.88793 0.93098 0.77828 0.95642 0.95547 0.92391 0.88062 0.90244 0.91402 0.90309 0.91693 0.91102 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.23 37.16 0.31 -0.93 16 2 C -0.08 -0.84 2.85 -90.62 -0.26 -1.10 16 3 C -0.14 -1.49 8.65 37.16 0.32 -1.17 16 4 C 0.10 1.08 1.67 -67.71 -0.11 0.96 16 5 H 0.04 0.45 7.52 -51.93 -0.39 0.06 16 6 N -0.67 -9.13 5.49 -108.00 -0.59 -9.72 16 7 C 0.04 0.58 6.02 -4.98 -0.03 0.55 16 8 C 0.50 9.95 7.86 -10.98 -0.09 9.86 16 9 O -0.54 -13.21 16.10 5.56 0.09 -13.13 16 10 N -0.71 -15.15 5.55 -61.46 -0.34 -15.49 16 11 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 12 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 13 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 16 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 20 C -0.11 -1.04 2.69 -89.81 -0.24 -1.28 16 21 C -0.13 -1.01 5.63 -25.83 -0.15 -1.16 16 22 C -0.14 -1.12 8.09 -25.83 -0.21 -1.33 16 23 C -0.14 -1.36 6.59 -25.92 -0.17 -1.53 16 24 H 0.06 0.46 5.58 -51.93 -0.29 0.17 16 25 H 0.05 0.39 8.13 -51.93 -0.42 -0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.75 7.63 -51.93 -0.40 0.36 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.91 7.76 -51.93 -0.40 0.51 16 30 H 0.05 0.49 6.17 -51.93 -0.32 0.17 16 31 H 0.35 5.19 6.93 -39.29 -0.27 4.92 16 32 H 0.09 1.23 7.65 -51.93 -0.40 0.83 16 33 H 0.05 0.64 7.94 -51.93 -0.41 0.23 16 34 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 38 H 0.10 1.00 6.08 -51.93 -0.32 0.68 16 39 H 0.08 0.61 7.99 -51.93 -0.41 0.19 16 40 H 0.07 0.48 7.11 -51.93 -0.37 0.11 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -31.20 345.51 -8.65 -39.85 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.66 Total: 6.87 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.07 Total: -3.94 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.20 Total: -50.77 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.20 -8.65 -39.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324746112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.585 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds