Wall clock time and date at job start Mon Mar 30 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47085 * 2 1 4 4 H 1.09004 * 109.47639 * 305.42082 * 3 2 1 5 5 N 1.46903 * 109.47089 * 65.42326 * 3 2 1 6 6 C 1.46905 * 110.99785 * 257.10438 * 5 3 2 7 7 C 1.50700 * 109.46895 * 175.61350 * 6 5 3 8 8 O 1.21281 * 120.00296 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99747 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99992 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47036 * 179.97438 * 10 9 7 12 12 H 1.07995 * 119.99762 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99583 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00716 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99898 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46842 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47406 * 119.99604 * 15 13 11 18 18 H 1.48507 * 109.47184 * 240.00125 * 15 13 11 19 19 C 1.53000 * 109.46959 * 185.41699 * 3 2 1 20 20 C 1.54268 * 110.03492 * 297.16938 * 19 3 2 21 21 C 1.54895 * 104.19425 * 217.10342 * 20 19 3 22 22 C 1.54888 * 102.74873 * 37.94605 * 21 20 19 23 23 C 1.53878 * 110.03240 * 180.02562 * 19 3 2 24 24 H 1.09007 * 109.46535 * 305.03216 * 1 2 3 25 25 H 1.09001 * 109.47308 * 65.03065 * 1 2 3 26 26 H 1.08998 * 109.47200 * 185.03356 * 1 2 3 27 27 H 1.09002 * 109.46569 * 240.00320 * 2 1 3 28 28 H 1.08992 * 109.47172 * 120.00764 * 2 1 3 29 29 H 1.00897 * 111.00405 * 133.14605 * 5 3 2 30 30 H 1.09004 * 109.47168 * 295.61400 * 6 5 3 31 31 H 1.08994 * 109.47289 * 55.61356 * 6 5 3 32 32 H 0.97001 * 119.99939 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.46913 * 300.00017 * 10 9 7 34 34 H 1.09004 * 109.46885 * 60.00094 * 10 9 7 35 35 H 0.96993 * 120.00177 * 180.02562 * 14 13 11 36 36 H 1.09001 * 110.01758 * 58.61447 * 19 3 2 37 37 H 1.08997 * 110.48487 * 335.78642 * 20 19 3 38 38 H 1.08997 * 110.48403 * 98.43032 * 20 19 3 39 39 H 1.08993 * 110.75683 * 279.63094 * 21 20 19 40 40 H 1.08995 * 110.74817 * 156.25474 * 21 20 19 41 41 H 1.08994 * 110.48942 * 203.37651 * 22 21 20 42 42 H 1.09004 * 110.60292 * 80.78789 * 22 21 20 43 43 H 1.09003 * 110.03556 * 238.57618 * 23 19 3 44 44 H 1.09006 * 110.03086 * 359.95281 * 23 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5996 1.9836 -0.8375 5 7 1.6601 2.0961 1.2595 6 6 0.5140 2.9935 1.0621 7 6 0.0860 3.5615 2.3907 8 8 0.6772 3.2491 3.4025 9 7 -0.9545 4.4159 2.4546 10 6 -1.3709 4.9676 3.7463 11 6 -2.5467 5.8883 3.5437 12 1 -2.9442 6.0463 2.5520 13 6 -3.1154 6.5281 4.6245 14 7 -2.6317 6.3353 5.8321 15 14 -4.5733 7.6688 4.3735 16 1 -4.9230 7.7150 2.9310 17 1 -5.7351 7.1653 5.1491 18 1 -4.2201 9.0336 4.8406 19 6 3.5640 1.4446 -0.1362 20 6 4.2042 0.7433 1.0796 21 6 5.4883 1.5634 1.3584 22 6 5.0332 3.0170 1.0774 23 6 4.0911 2.8902 -0.1370 24 1 -0.3633 0.5900 0.8416 25 1 -0.3634 0.4338 -0.9316 26 1 -0.3633 -1.0237 0.0902 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 2.4425 2.5915 1.6602 30 1 0.7998 3.8065 0.3945 31 1 -0.3127 2.4358 0.6221 32 1 -1.4276 4.6654 1.6454 33 1 -1.6565 4.1545 4.4136 34 1 -0.5445 5.5257 4.1864 35 1 -3.0321 6.7852 6.5925 36 1 3.8570 0.9395 -1.0566 37 1 3.5337 0.7805 1.9382 38 1 4.4562 -0.2887 0.8356 39 1 6.2886 1.2710 0.6788 40 1 5.8008 1.4504 2.3965 41 1 5.8900 3.6443 0.8319 42 1 4.4971 3.4237 1.9350 43 1 4.6406 3.0869 -1.0576 44 1 3.2611 3.5903 -0.0412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382767879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:09 Heat of formation + Delta-G solvation = -66.049795 kcal Electronic energy + Delta-G solvation = -21028.504313 eV Core-core repulsion = 17979.343683 eV Total energy + Delta-G solvation = -3049.160630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.71217 -38.44885 -35.58920 -34.11311 -32.38744 -32.15991 -29.84019 -28.77930 -27.71305 -25.77409 -24.12022 -22.25657 -21.57034 -20.41850 -19.67539 -19.22134 -17.21601 -16.47459 -15.98144 -15.48938 -15.30984 -14.95027 -14.71816 -14.25444 -13.85034 -13.53327 -13.39108 -12.96503 -12.91126 -12.52259 -12.31844 -12.26474 -11.92877 -11.56111 -11.37000 -11.23134 -11.09698 -10.94339 -10.89205 -10.87542 -10.71626 -10.63493 -10.55601 -10.40591 -10.30464 -9.36228 -8.95711 -8.72076 -8.24385 -7.82647 -6.15401 -4.22185 3.23980 3.30987 3.34032 3.44621 3.87245 4.31735 4.39494 4.49021 4.53340 4.67725 4.98967 5.13945 5.18016 5.20684 5.32044 5.35754 5.41038 5.46356 5.49919 5.54227 5.58555 5.65323 5.68546 5.70731 5.79605 5.84704 5.93134 5.99708 6.03790 6.14409 6.18851 6.29475 6.38009 6.42386 7.06720 7.35359 7.48592 7.52830 7.55130 7.70187 7.99137 8.67467 8.81516 9.16739 9.44839 10.94868 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027007 B = 0.003653 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.528079 B = 7663.898491 C = 8182.057473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C 0.092 3.908 4 H 0.051 0.949 5 N -0.663 5.663 6 C 0.035 3.965 7 C 0.496 3.504 8 O -0.542 6.542 9 N -0.716 5.716 10 C 0.251 3.749 11 C -0.542 4.542 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.101 4.101 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.127 4.127 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.352 0.648 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.389 0.611 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.265 0.735 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.127 -9.844 -14.973 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.018 4.018 4 H 0.069 0.931 5 N -0.298 5.298 6 C -0.097 4.097 7 C 0.280 3.720 8 O -0.420 6.420 9 N -0.365 5.365 10 C 0.130 3.870 11 C -0.580 4.580 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.120 4.120 20 C -0.159 4.159 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.164 4.164 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.174 0.826 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.221 0.779 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.132 -10.516 -13.803 21.173 hybrid contribution -0.700 1.576 -0.966 1.976 sum 11.432 -8.939 -14.769 20.706 Atomic orbital electron populations 1.21825 0.96026 1.01508 1.01760 1.21539 0.96033 0.95617 1.01473 1.21643 0.93453 0.95764 0.90966 0.93074 1.60185 1.09621 1.34926 1.25061 1.22050 0.96157 0.95742 0.95786 1.20393 0.81319 0.79813 0.90477 1.90658 1.54980 1.59808 1.36541 1.46454 1.31866 1.45447 1.12772 1.19080 0.94917 0.93567 0.79466 1.21272 1.15032 1.27525 0.94214 0.91891 1.24954 0.97457 0.96731 0.94903 1.69986 1.40973 1.42622 0.98710 0.86373 0.81972 0.80318 0.78309 1.19651 1.20788 1.20817 1.22130 0.94586 0.95962 0.99340 1.22475 0.96667 0.98263 0.98523 1.22491 0.97536 0.95051 1.01194 1.22390 0.98906 0.97097 0.98132 1.22254 0.99116 0.96349 0.98705 0.91336 0.93622 0.93260 0.92625 0.91163 0.82640 0.93214 0.88386 0.77893 0.95562 0.95670 0.92522 0.90686 0.89524 0.91980 0.91998 0.91542 0.91894 0.91151 0.91839 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.20 37.16 0.34 -1.32 16 2 C -0.11 -1.11 5.31 -26.73 -0.14 -1.25 16 3 C 0.09 0.97 1.76 -67.71 -0.12 0.85 16 4 H 0.05 0.53 7.63 -51.93 -0.40 0.13 16 5 N -0.66 -9.01 4.59 -107.99 -0.50 -9.51 16 6 C 0.04 0.51 5.45 -4.97 -0.03 0.48 16 7 C 0.50 9.94 7.88 -10.98 -0.09 9.85 16 8 O -0.54 -13.16 16.30 5.56 0.09 -13.07 16 9 N -0.72 -15.15 5.55 -61.47 -0.34 -15.49 16 10 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 11 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 12 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 15 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.10 -0.94 2.76 -89.50 -0.25 -1.19 16 20 C -0.12 -1.19 5.07 -25.07 -0.13 -1.31 16 21 C -0.13 -1.15 6.91 -24.74 -0.17 -1.32 16 22 C -0.13 -1.25 6.47 -25.10 -0.16 -1.41 16 23 C -0.13 -1.20 5.72 -25.64 -0.15 -1.34 16 24 H 0.07 0.89 5.98 -51.92 -0.31 0.58 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.79 7.45 -51.93 -0.39 0.40 16 29 H 0.35 5.06 5.47 -39.29 -0.21 4.84 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.27 6.01 -51.93 -0.31 0.96 16 32 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.03 6.72 -51.93 -0.35 0.68 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.79 7.71 -51.93 -0.40 0.39 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.64 7.16 -51.93 -0.37 0.27 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -31.22 343.31 -8.88 -40.10 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.69 Total: 7.18 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.33 Total: -4.75 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.10 Total: -50.54 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.22 -8.88 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382767879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.950 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds